genome.fa.s12.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  37  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9919309--9919354	23	2.0	23	87	8	67	76	6	6	10	1.16
9919274--9919338	29	2.2	28	76	12	69	78	3	12	6	1.05
9924334--9924388	13	4.1	14	77	17	55	41	3	16	38	1.66
9925891--9925925	18	1.9	18	94	0	61	77	8	5	8	1.13
9926485--9926535	20	2.5	20	90	0	75	50	15	7	25	1.71
9934417--9934443	12	2.2	12	100	0	54	77	0	0	22	0.76
9935888--9936188	158	1.9	155	84	4	399	22	24	23	28	1.99
9939945--9939984	15	2.7	14	88	11	62	57	0	0	42	0.98
9939951--9939987	9	4.4	9	80	19	53	56	0	0	43	0.99
9940987--9941075	20	4.4	19	73	15	72	42	1	0	56	1.06
9940972--9941075	41	2.6	40	93	3	181	42	0	0	56	1.05
9941052--9941102	15	3.3	15	84	15	68	41	0	0	58	0.98
9942782--9942827	22	2.0	23	83	4	58	26	28	0	45	1.54
9947019--9947074	25	2.3	23	77	17	58	44	1	5	48	1.36
9950331--9950379	20	2.3	22	80	16	59	42	2	0	55	1.11
9955828--9955867	21	1.9	21	84	0	53	45	5	15	35	1.68
9958503--9958559	21	2.5	24	86	8	75	38	28	5	28	1.78
9959141--9959429	51	5.6	51	86	3	384	28	24	16	31	1.96
9960289--9960337	22	2.2	22	82	7	55	34	16	0	48	1.46
9967377--9967415	13	3.2	12	82	17	53	2	15	2	79	0.95
9967367--9967416	22	2.3	23	83	13	61	2	18	4	76	1.04
9967933--9967960	2	14.0	2	100	0	56	50	0	50	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9968873--9968994	30	4.1	30	68	10	106	42	12	17	27	1.85
9968928--9969049	31	4.2	30	70	15	103	48	9	14	27	1.75
9968873--9969049	89	2.0	87	86	8	243	46	11	15	26	1.80
9971968--9972331	196	1.9	197	84	4	493	40	12	7	39	1.70
9978380--9978415	18	1.9	19	94	5	65	30	5	8	55	1.52
9983213--9983285	24	3.0	24	76	7	85	26	19	21	32	1.97
9985449--9985529	28	2.9	27	74	15	85	33	16	16	34	1.91
9985586--9985633	25	2.0	24	87	4	69	8	6	18	66	1.39
10002944--10003405	121	3.9	116	82	7	499	39	17	13	30	1.87
10011525--10011580	21	2.7	21	86	10	87	32	21	14	32	1.93
10019545--10019745	62	3.2	62	88	0	303	31	12	21	34	1.90
10020532--10020582	21	2.4	21	80	6	59	29	27	15	27	1.96
10025600--10025628	9	3.2	9	100	0	58	34	10	0	55	1.34
10025761--10025828	36	1.9	36	90	3	111	42	2	4	50	1.37
10026161--10026215	27	2.1	27	93	3	94	54	20	7	18	1.66
10040607--10040766	40	4.0	40	84	0	203	33	28	20	16	1.95
10040571--10040766	80	2.4	80	87	0	266	33	27	20	18	1.96
10047085--10047128	13	3.4	13	80	0	52	29	45	2	22	1.65
10047082--10047180	39	2.5	39	83	6	128	27	46	5	21	1.72
10047113--10047191	39	2.0	39	82	4	97	25	46	8	18	1.78
10047810--10047875	26	2.5	26	76	13	73	39	18	1	40	1.60
10053265--10053323	21	2.7	22	86	5	75	66	1	0	32	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10053968--10054024	29	2.0	29	86	10	82	50	0	17	31	1.46
10055521--10055635	58	2.0	58	82	0	140	44	2	7	45	1.46
10062453--10062482	15	1.9	16	93	6	53	43	0	3	53	1.17
10064580--10064637	18	3.3	18	69	26	61	25	20	15	37	1.92
10064566--10064638	34	2.2	34	97	2	139	23	19	17	39	1.92
10065391--10065428	19	2.0	20	89	5	60	39	23	13	23	1.90
10065711--10065757	13	3.5	13	76	21	51	42	19	6	31	1.76
10065707--10065747	15	2.9	15	75	24	52	39	17	4	39	1.71
10066073--10066385	167	1.9	167	82	5	400	41	13	14	30	1.85
10068720--10068760	19	2.1	20	86	4	57	78	9	4	7	1.10
10068720--10068760	10	4.1	10	82	17	50	78	9	4	7	1.10
10072485--10072509	2	12.5	2	100	0	50	48	0	0	52	1.00
10072548--10072601	2	27.0	2	100	0	108	50	0	0	50	1.00
10077650--10077704	24	2.3	25	78	9	69	45	3	3	47	1.38
10078747--10078805	22	2.8	20	85	14	75	18	5	1	74	1.09
10078747--10078806	21	2.8	22	87	12	81	18	5	1	75	1.07
10086082--10086137	29	1.9	29	85	0	76	35	5	8	50	1.57
10086311--10086389	31	2.6	30	84	6	88	40	11	11	36	1.77
10087095--10087140	18	2.5	19	82	10	60	60	8	2	28	1.38
10088951--10088975	7	3.6	7	100	0	50	28	0	0	72	0.86
10095632--10095671	20	2.0	20	85	5	53	60	5	0	35	1.19
10096235--10096266	14	2.3	14	94	0	55	43	15	9	31	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10096814--10097034	43	5.1	43	84	0	289	27	28	19	25	1.98
10100328--10100627	41	7.3	41	73	8	193	21	24	18	37	1.94
10100328--10100541	82	2.6	82	79	5	234	21	25	18	35	1.96
10100316--10100627	123	2.5	123	72	14	284	21	23	18	36	1.95
10102177--10102375	42	4.7	42	83	2	229	26	25	21	27	1.99
10102177--10102390	85	2.5	85	83	3	252	26	26	20	27	1.99
10105357--10105406	20	2.5	21	80	9	59	58	10	26	6	1.54
10106213--10106372	41	3.9	41	84	6	218	15	35	20	28	1.93
10106213--10106375	81	2.0	81	89	2	247	15	36	19	28	1.93
10106285--10106471	96	1.9	96	94	0	329	14	36	19	29	1.91
10106381--10106526	40	3.6	40	85	5	195	13	33	20	32	1.92
10112139--10112219	29	2.7	30	84	9	103	53	11	2	33	1.50
10114650--10114731	30	2.7	30	81	9	94	50	4	2	42	1.37
10116062--10116156	30	3.2	30	86	0	127	44	18	1	35	1.58
10116078--10116370	30	9.9	29	78	12	140	39	23	2	34	1.68
10116209--10116426	29	7.4	30	82	11	229	38	25	1	34	1.65
10116215--10116423	59	3.6	58	80	12	223	37	26	1	34	1.65
10116209--10116423	88	2.4	88	81	9	265	37	26	1	34	1.65
10120890--10120927	19	2.0	20	84	5	51	60	2	0	36	1.11
10121777--10121802	2	13.0	2	100	0	52	50	0	0	50	1.00
10125962--10126013	11	4.6	11	73	4	50	21	3	0	75	0.97
10126773--10126810	18	2.2	17	90	4	58	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10126766--10126826	20	3.2	18	78	15	61	49	1	3	45	1.28
10129726--10129779	21	2.6	21	84	0	81	46	11	18	24	1.81
10135202--10135406	107	1.9	108	89	1	322	41	13	14	30	1.83
10135700--10135738	19	2.2	18	86	9	53	61	2	12	23	1.43
10137687--10138199	45	12.0	44	81	8	433	25	15	24	34	1.94
10137937--10138199	39	6.5	39	83	7	262	26	14	26	32	1.95
10144118--10144243	25	5.0	25	71	11	76	23	13	26	35	1.92
10144941--10144988	21	2.3	21	82	7	62	29	6	22	41	1.78
10147292--10147336	22	2.1	22	87	4	65	46	4	11	37	1.60
10158365--10158588	25	8.9	25	79	1	216	35	24	18	21	1.96
10158359--10158596	75	3.2	75	81	4	264	34	24	18	22	1.96
10158359--10158563	50	4.1	50	86	1	241	35	24	17	22	1.95
10168392--10168427	16	2.2	16	90	0	54	41	19	19	19	1.90
10177987--10178054	29	2.4	28	78	7	73	47	2	5	44	1.42
10178552--10178612	32	1.9	32	86	6	88	44	9	4	40	1.59
10186972--10187010	3	13.0	3	100	0	78	66	0	0	33	0.92
10187274--10187327	28	2.1	28	83	13	71	25	3	3	66	1.25
10187549--10187574	3	8.7	3	100	0	52	65	0	0	34	0.93
10188182--10188233	25	2.1	24	82	10	61	53	3	5	36	1.43
10189681--10189715	3	12.0	3	93	6	63	68	0	0	31	0.90
10196863--10196903	3	14.0	3	94	5	75	68	0	0	31	0.90
10214485--10214520	16	2.2	16	90	0	54	61	0	22	16	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10223366--10223426	23	2.6	23	84	2	68	11	9	11	67	1.43
10222431--10225441	971	3.1	961	78	9	2747	33	14	12	39	1.84
10218128--10225309	961	7.5	962	75	12	3545	33	15	12	37	1.86
10225691--10225759	34	2.0	34	100	0	138	36	14	23	26	1.93
10236031--10236073	19	2.3	19	88	4	61	32	11	18	37	1.87
10236049--10236206	52	3.0	52	85	0	199	27	13	23	35	1.92
10243947--10243984	17	2.2	18	81	13	53	60	13	13	13	1.59
10243953--10243985	17	1.9	17	93	0	57	57	12	15	15	1.65
10244369--10244416	15	3.1	15	82	11	53	0	29	0	70	0.87
10244376--10244428	18	2.9	18	78	10	56	0	28	1	69	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132