genome.fa.s12.2.7.7.80.10.50.1000.24.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  24  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6846560--6846695	58	2.3	58	82	0	146	30	5	27	35	1.81
6846680--6846763	30	2.8	29	80	10	98	42	3	17	35	1.67
6846651--6846763	60	1.9	60	83	10	151	38	2	21	37	1.67
6847192--6847221	7	4.3	7	95	0	51	16	13	56	13	1.67
6848665--6848701	17	2.2	17	90	0	56	62	2	0	35	1.10
6848998--6849025	13	2.2	13	100	0	56	25	46	14	14	1.82
6849189--6849228	21	1.9	21	90	10	64	17	2	20	60	1.48
6852186--6852388	59	3.5	58	83	6	248	34	1	28	34	1.69
6852105--6852411	29	10.6	28	71	13	144	33	4	26	35	1.76
6852206--6852425	59	3.8	58	79	9	150	35	0	28	35	1.64
6855897--6855973	33	2.3	33	82	8	86	50	14	2	32	1.56
6858334--6858376	22	1.9	23	90	4	70	62	0	0	37	0.95
6860566--6860627	30	2.2	29	81	13	76	24	6	14	54	1.63
6860768--6860825	12	4.9	12	82	4	73	50	20	15	13	1.78
6861348--6861391	18	2.5	18	81	3	54	36	0	0	63	0.95
6870799--6870869	34	2.1	34	100	0	142	61	5	5	26	1.40
6871175--6871267	30	3.0	31	69	9	82	26	20	34	18	1.96
6871423--6871459	15	2.5	15	84	16	51	35	5	5	54	1.47
6872369--6872399	6	5.2	6	100	0	62	16	67	0	16	1.23
6872627--6872669	21	2.1	20	86	4	59	27	11	0	60	1.31
6876548--6876578	16	1.9	16	93	0	53	54	9	6	29	1.57
6876589--6876660	28	2.6	27	82	10	83	72	1	1	25	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6876589--6876658	31	2.4	27	82	15	79	72	1	1	24	1.00
6876785--6876810	5	5.2	5	100	0	52	0	61	0	38	0.96
6891288--6891352	26	2.5	26	87	2	96	38	1	26	33	1.66
6891506--6891551	23	2.0	23	95	0	83	26	10	13	50	1.74
6895187--6895251	26	2.6	25	90	4	112	38	3	27	30	1.72
6901733--6901838	31	3.5	31	72	12	105	25	17	10	46	1.80
6901745--6901922	61	3.0	59	87	2	232	24	17	10	47	1.80
6902155--6902214	31	1.9	31	83	12	79	43	10	18	28	1.82
6904433--6904492	28	2.1	28	90	0	93	25	10	33	31	1.89
6904451--6904728	59	4.7	59	87	0	342	33	3	29	33	1.74
6904510--6904669	29	5.5	29	71	14	141	32	1	30	36	1.66
6904473--6904675	29	6.9	30	65	9	112	32	1	31	35	1.67
6904802--6905133	162	2.1	160	92	1	547	43	13	18	25	1.85
6907052--6907589	76	7.1	76	92	1	889	34	17	13	34	1.89
6919724--6919784	29	2.1	29	87	3	88	26	9	34	29	1.88
6919766--6920076	29	10.7	29	63	22	91	33	2	29	34	1.72
6919766--6920076	58	5.3	59	88	5	454	33	2	29	34	1.72
6919766--6920076	117	2.7	116	87	4	464	33	2	29	34	1.72
6919802--6920090	29	10.0	27	68	22	133	33	3	29	33	1.74
6920150--6920481	162	2.1	160	93	1	556	42	14	18	24	1.87
6923211--6923318	41	2.7	40	75	9	94	22	24	13	39	1.90
6925715--6925912	41	4.9	41	85	1	229	21	26	17	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6925771--6925948	82	2.2	82	83	4	216	20	25	17	36	1.94
6925926--6926032	40	2.7	39	88	5	153	20	18	20	40	1.92
6926127--6926153	14	1.9	14	100	0	54	7	7	22	62	1.46
6926795--6926853	28	2.2	26	82	8	66	61	15	5	18	1.52
6929830--6929868	17	2.3	17	86	0	51	17	12	23	46	1.83
6933453--6933589	34	4.0	34	88	3	193	33	13	8	43	1.75
6936349--6936382	12	2.8	12	95	0	59	23	35	35	5	1.79
6938851--6938946	48	2.0	48	100	0	192	27	12	20	39	1.89
6946329--6946360	12	2.6	13	90	9	50	12	0	3	84	0.74
6946327--6946375	21	2.3	22	79	10	57	20	2	4	73	1.10
6947843--6947893	26	2.0	26	88	3	77	19	19	27	33	1.96
6956289--6956326	20	2.0	20	89	5	60	47	0	26	26	1.52
6957650--6957905	130	2.0	130	92	0	433	26	25	12	35	1.92
6957944--6958465	261	2.0	261	92	0	873	25	24	15	34	1.95
6964096--6964150	18	3.0	19	65	20	53	32	10	21	34	1.89
6964079--6964282	36	5.6	36	85	2	230	27	13	21	37	1.91
6964079--6964282	73	2.8	71	81	4	212	27	13	21	37	1.91
6964230--6964433	37	5.5	37	82	2	189	24	12	26	36	1.91
6964227--6964433	74	2.8	74	78	7	242	24	12	26	36	1.91
6964082--6964434	37	9.6	37	77	9	126	26	12	24	36	1.91
6969010--6969172	29	5.7	30	73	14	130	33	5	25	34	1.79
6969017--6969175	86	1.8	86	81	7	198	33	5	25	35	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6969015--6969294	57	4.8	58	75	9	221	35	5	23	35	1.77
6969150--6969260	29	3.8	29	71	18	86	36	3	23	36	1.72
6969219--6969381	29	5.6	29	72	13	86	38	3	22	35	1.72
6969130--6969416	117	2.4	117	79	11	286	35	4	23	36	1.74
6971138--6971192	17	3.1	17	87	10	83	58	0	0	41	0.98
6971138--6971189	19	2.8	19	91	5	81	57	0	0	42	0.98
6971587--6972816	209	5.9	211	87	3	1639	21	22	19	37	1.95
6973332--6973785	50	9.5	49	76	12	324	16	30	16	35	1.91
6973496--6973755	43	5.7	42	75	14	241	17	32	13	36	1.88
6973393--6973785	93	4.1	93	86	5	495	16	31	15	35	1.91
6974687--6974759	6	11.8	6	79	13	60	2	16	1	79	0.92
6974702--6974759	7	9.0	6	85	10	62	3	15	0	81	0.83
6974703--6974744	19	2.2	19	87	8	59	4	16	0	78	0.91
6980001--6980260	59	4.4	60	77	9	239	33	2	26	38	1.69
6979920--6980371	29	15.3	29	73	15	270	34	3	26	36	1.72
6982113--6982174	17	3.5	17	88	4	88	59	1	0	38	1.07
6982126--6982183	17	3.4	17	85	0	71	63	1	0	34	1.04
6986488--6986539	15	3.4	15	76	10	52	17	1	5	75	1.10
6986784--6986829	22	2.1	23	88	8	69	19	2	6	71	1.18
6986866--6986895	12	2.6	11	90	10	51	20	0	0	80	0.72
6987039--6987083	22	2.0	22	82	4	54	24	6	4	64	1.37
6987056--6987154	4	22.8	4	70	22	58	24	4	5	66	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6987074--6987146	22	3.3	21	76	12	74	24	2	6	65	1.30
6987107--6987151	18	2.6	17	80	16	56	26	4	2	66	1.22
6999006--6999046	21	2.0	21	85	0	55	39	24	7	29	1.82
6999321--6999353	14	2.4	14	94	0	57	24	18	12	45	1.83
7001504--7001557	27	2.0	27	85	3	74	5	14	18	61	1.52
7018165--7018214	6	8.5	6	80	6	50	76	2	2	20	0.99
7018232--7018276	10	4.4	10	80	5	54	17	11	2	68	1.29
7018237--7018276	21	1.9	21	89	0	62	20	10	2	67	1.31
7018293--7018317	6	4.2	6	100	0	50	84	0	0	16	0.63
7021089--7021146	12	4.4	13	74	21	50	72	1	1	24	1.03
7021089--7021146	27	2.2	26	82	14	66	72	1	1	24	1.03
7021089--7021133	13	3.3	13	84	15	56	71	0	2	26	0.98
7021091--7021132	20	2.2	19	86	4	57	69	0	2	28	1.01
7021096--7021146	20	2.6	20	81	3	59	72	1	1	23	1.05
7027015--7027160	31	4.8	29	78	14	93	39	23	2	34	1.67
7027015--7027251	30	7.9	29	72	13	135	35	25	3	34	1.74
7027012--7027260	60	4.1	57	74	11	196	35	25	4	34	1.77
7029489--7029525	19	1.9	19	94	0	65	27	10	18	43	1.83
7034020--7034055	18	2.0	18	88	0	54	61	2	30	5	1.33
7038746--7039041	99	3.0	100	84	2	373	36	21	27	14	1.92
7038793--7039041	49	5.0	50	69	14	185	36	20	28	15	1.93
7038744--7038979	50	4.8	49	71	13	187	36	22	27	13	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7038793--7039014	50	4.5	49	71	11	177	36	19	28	15	1.93
7039103--7039599	92	5.5	92	92	1	819	31	16	19	32	1.94
7039443--7039585	40	3.5	39	69	16	117	29	14	19	36	1.92
7041753--7042026	29	9.4	28	77	8	226	35	25	2	36	1.68
7041804--7041975	86	2.0	88	87	6	253	37	24	0	37	1.60
7041753--7042027	59	4.7	59	78	8	249	35	25	2	37	1.68
7041841--7042077	59	4.0	61	78	11	185	34	24	3	36	1.74
7043697--7043862	60	2.8	60	89	3	248	24	16	10	48	1.78
7043704--7043884	60	3.0	59	87	4	240	25	16	10	46	1.79
7044089--7044164	31	2.5	28	75	12	71	43	11	17	27	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132