genome.fa.s12.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  124  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38092312--38092348	18	2.1	18	89	0	56	32	8	2	56	1.43
38092864--38092942	31	2.5	31	81	4	86	25	15	13	45	1.83
38093141--38093231	28	3.2	27	72	15	94	51	7	17	23	1.71
38093142--38093252	59	1.9	58	87	5	161	48	8	17	26	1.74
38096635--38096660	13	2.0	13	100	0	52	0	7	0	92	0.39
38106822--38106848	3	9.0	3	100	0	54	33	0	0	66	0.92
38119435--38119483	24	2.0	25	84	4	64	46	0	4	48	1.20
38126700--38126745	24	1.9	24	82	8	58	56	0	2	41	1.11
38126757--38126784	6	4.7	6	100	0	56	0	67	0	32	0.91
38126757--38126816	18	3.3	19	77	9	54	10	61	0	28	1.28
38127050--38127093	7	6.4	7	94	5	81	13	0	86	0	0.57
38130618--38130672	27	2.0	27	100	0	110	32	3	7	56	1.44
38132450--38132479	15	2.0	15	93	0	51	33	10	6	50	1.62
38164806--38164859	21	2.5	21	81	3	54	55	1	1	40	1.21
38165540--38165604	34	1.9	34	96	0	121	27	12	27	32	1.92
38166282--38166327	25	1.9	23	86	8	65	21	2	21	54	1.56
38166379--38166418	21	1.9	21	84	0	53	30	0	2	67	1.04
38169409--38169444	18	1.9	18	88	5	54	27	5	16	50	1.68
38170676--38170731	15	3.8	16	70	15	57	32	10	5	51	1.59
38174240--38174269	13	2.2	14	94	5	53	60	13	0	26	1.34
38177797--38177850	26	2.1	26	96	0	99	29	31	9	29	1.88
38180450--38180520	31	2.3	31	85	4	90	29	16	15	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38184981--38185011	16	1.9	16	93	0	53	67	3	0	29	1.06
38193649--38193673	2	12.5	2	100	0	50	52	48	0	0	1.00
38194186--38194330	55	2.6	56	83	3	186	28	6	15	50	1.68
38198226--38198321	34	2.9	33	84	10	108	50	1	1	47	1.15
38198228--38198315	17	5.3	16	68	18	56	52	1	0	46	1.08
38199179--38199206	12	2.3	12	100	0	56	50	10	14	25	1.75
38206977--38207012	15	2.2	16	90	9	56	72	2	0	25	0.98
38207340--38207405	31	2.1	31	83	10	82	42	0	1	56	1.08
38208333--38208361	3	9.7	3	100	0	58	34	0	0	65	0.93
38210934--38211246	57	5.4	57	81	5	301	27	21	17	32	1.96
38212074--38212165	30	3.1	30	84	3	96	61	4	6	27	1.39
38215397--38215520	23	5.3	23	78	9	126	12	22	20	44	1.85
38215398--38215545	48	3.2	47	78	11	137	14	22	18	44	1.85
38218704--38219166	61	7.8	59	74	9	390	34	15	20	30	1.93
38218704--38219163	60	7.8	60	74	9	365	34	15	20	29	1.93
38218704--38219182	115	4.1	114	78	6	431	34	15	20	29	1.93
38218704--38219184	59	8.2	59	76	9	414	34	15	20	29	1.93
38234036--38234098	24	2.6	24	84	0	81	26	14	7	50	1.70
38236600--38236751	23	6.5	23	77	10	105	11	24	23	41	1.86
38236603--38236721	45	2.6	46	76	9	111	11	22	24	41	1.87
38236709--38236775	26	2.6	26	97	0	125	10	25	20	43	1.84
38238503--38238549	24	2.0	24	91	0	76	25	12	6	55	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38238511--38238565	24	2.3	24	83	0	65	29	14	7	49	1.70
38245152--38245215	24	2.7	24	97	0	119	37	25	29	7	1.84
38245146--38245225	24	3.5	22	84	5	63	38	26	26	8	1.85
38269924--38269953	4	7.2	4	92	7	51	26	26	0	46	1.53
38283798--38283877	31	2.6	31	86	4	108	46	10	25	18	1.80
38286110--38286148	6	6.5	6	100	0	78	0	33	48	17	1.48
38286147--38286254	6	17.5	6	82	5	108	14	37	2	45	1.60
38297640--38297678	16	2.4	16	86	4	51	79	2	17	0	0.84
38304965--38305001	18	2.1	18	89	0	56	72	5	13	8	1.24
38312032--38312065	17	1.9	18	88	5	52	67	2	8	20	1.31
38316117--38316229	60	1.9	60	88	1	174	35	7	18	38	1.78
38316521--38316555	16	2.2	16	89	0	52	28	0	2	68	1.04
38324095--38324149	27	2.0	27	100	0	110	21	16	0	61	1.34
38324122--38324188	35	1.9	35	96	0	125	25	14	1	58	1.46
38324130--38324203	35	2.1	35	82	7	89	31	10	2	55	1.48
38330714--38330763	20	2.5	20	80	0	55	30	12	16	42	1.84
38334487--38334527	18	2.2	18	86	4	55	68	7	0	24	1.15
38344559--38344593	18	1.9	18	88	0	52	11	28	0	60	1.32
38345349--38345404	21	2.7	21	75	10	60	33	16	17	32	1.92
38346089--38346114	6	4.3	6	100	0	52	69	0	15	15	1.20
38360528--38360585	30	1.9	30	85	3	80	55	0	1	43	1.10
38372402--38372458	29	2.0	28	86	3	78	49	8	8	33	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38374181--38374206	13	2.0	13	100	0	52	15	7	15	61	1.55
38376627--38376654	13	2.2	13	100	0	56	21	21	0	57	1.41
38379253--38379290	3	12.7	3	100	0	76	34	0	31	34	1.58
38380003--38380118	56	2.1	54	84	6	146	34	22	18	24	1.96
38384710--38384750	20	2.0	20	90	0	64	53	4	0	41	1.22
38387309--38387589	149	1.9	151	84	4	381	29	9	9	52	1.64
38395551--38395579	13	2.2	13	100	0	58	44	6	0	48	1.29
38404996--38405075	31	2.7	30	77	12	83	45	0	3	51	1.19
38405049--38405098	22	2.2	23	82	3	57	48	0	0	52	1.00
38405179--38405243	28	2.3	28	78	7	78	40	4	4	50	1.43
38405337--38405378	23	2.0	21	86	13	59	52	2	0	45	1.13
38405402--38405455	23	2.3	23	73	17	58	53	5	0	40	1.24
38409116--38409222	53	2.0	53	98	0	205	37	22	13	27	1.91
38410241--38410276	6	6.0	6	100	0	72	16	50	0	33	1.46
38422201--38422244	21	2.1	21	86	0	61	27	15	56	0	1.40
38424529--38424830	151	2.0	150	86	3	419	42	14	16	26	1.87
38433763--38433789	13	2.1	13	100	0	54	44	18	14	22	1.86
38436423--38436495	17	4.1	17	81	10	76	34	2	6	56	1.40
38436447--38436503	23	2.5	24	80	8	64	43	0	5	50	1.24
38436447--38436503	6	9.8	6	79	7	55	43	0	5	50	1.24
38436448--38436503	17	3.2	17	82	9	69	44	0	5	50	1.25
38437176--38437216	21	2.0	20	85	4	55	51	0	2	46	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38438350--38438547	30	6.6	29	84	5	218	42	17	2	37	1.63
38438379--38438547	60	2.8	60	86	1	241	43	17	1	37	1.57
38438358--38438545	90	2.1	90	86	4	254	43	17	2	37	1.61
38438528--38438564	19	1.9	19	88	0	56	56	8	0	35	1.29
38438498--38438594	49	2.0	49	87	0	140	45	17	2	35	1.60
38448253--38448285	15	2.2	16	89	10	52	33	21	15	30	1.94
38448948--38448988	18	2.3	18	86	0	55	60	7	4	26	1.43
38449137--38449185	21	2.3	21	85	0	62	38	6	40	14	1.71
38449556--38449668	29	3.7	30	74	21	51	42	0	2	53	1.20
38449563--38449668	23	5.0	21	78	17	96	42	0	2	53	1.22
38449543--38449638	40	2.4	38	80	10	104	43	1	2	53	1.19
38449603--38449664	17	3.9	17	72	20	71	40	0	1	58	1.08
38449601--38449664	29	2.2	29	83	5	85	40	0	1	57	1.08
38449698--38449742	8	5.2	8	82	10	54	26	4	0	68	1.08
38449692--38449803	12	8.8	12	70	25	70	28	1	1	67	1.10
38449691--38449813	59	2.2	59	83	5	155	30	1	1	66	1.10
38449738--38449766	11	2.5	12	94	5	51	37	0	0	62	0.96
38449716--38449813	30	3.3	30	78	9	103	30	0	2	67	1.02
38451573--38451830	58	4.4	58	87	6	358	31	3	32	32	1.73
38451575--38451830	29	8.8	28	72	16	182	31	2	32	33	1.72
38452510--38452549	18	2.3	18	82	4	55	10	12	0	77	0.99
38452554--38452584	16	1.9	16	93	0	53	38	22	22	16	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38453827--38454085	129	2.0	129	98	0	500	33	19	16	29	1.94
38454820--38454971	41	3.7	41	80	0	171	19	25	20	34	1.96
38455010--38455197	41	4.6	39	79	8	189	18	29	19	32	1.96
38454976--38455197	82	2.7	80	82	6	232	18	30	18	32	1.95
38458054--38458082	2	14.5	2	100	0	58	51	0	0	48	1.00
38460620--38460660	16	2.4	18	84	8	50	56	0	0	43	0.99
38460619--38460659	17	2.3	19	80	16	52	56	0	0	43	0.99
38460882--38460930	23	2.1	23	84	3	62	69	0	22	8	1.14
38462380--38462427	17	2.9	16	79	11	60	68	6	0	25	1.12
38462766--38462901	61	2.2	62	78	7	154	45	9	17	27	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132