genome.fa.s12.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  108  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32784183--32784223	13	2.9	14	85	14	57	41	0	0	58	0.98
32784233--32784282	16	3.2	16	70	18	52	52	0	0	48	1.00
32784231--32784300	29	2.5	26	77	18	70	54	0	1	44	1.09
32790590--32790643	25	2.2	25	86	3	74	40	16	29	12	1.86
32790638--32790711	22	3.3	22	88	1	103	43	24	20	12	1.86
32803075--32803126	27	1.9	27	84	7	70	65	0	1	32	1.04
32811999--32812031	2	16.5	2	100	0	66	51	0	0	48	1.00
32813351--32813404	16	3.5	15	75	24	51	53	0	0	46	1.00
32813339--32813408	15	4.6	16	73	7	65	55	0	0	44	0.99
32817233--32817265	3	11.0	3	93	0	57	33	3	0	63	1.10
32817223--32817265	12	3.6	12	87	6	61	32	4	0	62	1.15
32817223--32817274	12	4.3	12	83	9	54	32	3	1	61	1.25
32819368--32819407	20	2.1	19	85	4	53	47	2	0	50	1.14
32827554--32827606	25	2.1	25	100	0	106	47	5	3	43	1.45
32830932--32830983	21	2.5	21	81	6	61	38	9	5	46	1.61
32832047--32832095	14	3.1	16	80	14	57	51	0	0	48	1.00
32831992--32832198	103	2.0	103	100	0	414	42	9	10	36	1.72
32832150--32832198	14	3.1	16	80	14	57	51	0	0	48	1.00
32835272--32835719	30	15.0	29	81	6	405	37	22	2	37	1.67
32835284--32835719	90	4.9	90	82	7	469	37	22	1	37	1.65
32836842--32836921	40	2.0	40	80	9	92	38	1	2	57	1.20
32838859--32839334	98	4.9	98	86	3	663	36	18	26	17	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32838856--32839372	196	2.6	195	88	1	741	36	19	25	17	1.94
32838856--32839331	49	9.7	49	71	10	346	36	19	26	17	1.94
32839597--32839750	42	3.7	42	86	3	193	28	28	14	28	1.95
32839597--32839750	84	1.8	84	85	0	218	28	28	14	28	1.95
32841535--32841736	30	6.9	28	81	9	174	34	17	2	45	1.63
32841546--32841736	59	3.2	57	82	8	213	33	18	3	45	1.65
32842693--32843195	78	6.4	78	77	5	444	22	30	21	25	1.99
32842696--32843195	117	4.3	117	76	5	454	22	30	21	25	1.99
32842692--32843199	39	13.0	39	75	4	344	22	30	20	25	1.99
32844926--32845207	30	9.4	30	78	10	204	36	19	2	40	1.66
32844922--32845207	90	3.2	88	75	10	237	36	19	2	41	1.66
32845195--32845266	29	2.5	29	95	2	128	36	26	4	33	1.76
32846285--32846342	29	2.0	29	93	0	98	37	13	10	37	1.79
32848440--32848500	31	1.9	32	93	3	106	44	4	8	42	1.55
32848810--32848868	29	2.0	30	83	9	77	62	3	8	25	1.39
32849976--32850033	16	3.6	15	74	17	53	62	3	0	34	1.12
32849975--32850033	17	3.6	16	70	18	50	61	3	0	35	1.13
32850030--32850070	21	1.9	21	85	5	55	29	12	17	41	1.85
32851032--32851110	39	2.1	37	83	9	97	44	3	6	45	1.47
32852267--32852314	16	3.1	15	80	14	53	72	4	2	20	1.11
32856288--32856318	16	2.0	15	93	6	53	0	16	0	83	0.64
32862162--32862205	23	1.9	23	85	0	61	61	0	4	34	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32862954--32863188	40	5.7	40	73	10	114	25	18	20	35	1.95
32862992--32863085	49	1.9	49	91	0	152	23	21	21	34	1.97
32866878--32866949	37	1.9	37	83	10	94	31	1	5	61	1.28
32866901--32866949	18	2.6	19	72	15	57	34	0	6	59	1.22
32873309--32873374	33	1.9	36	84	9	93	51	0	3	45	1.16
32873329--32873375	18	2.6	18	77	9	51	57	0	0	42	0.98
32874184--32874277	47	2.0	47	91	0	152	39	10	6	43	1.65
32874629--32874668	19	2.2	19	90	4	64	45	0	2	52	1.14
32874634--32874674	18	2.2	19	86	4	57	41	2	2	53	1.27
32878487--32878571	42	2.0	42	82	8	102	32	4	2	60	1.30
32888664--32888721	26	2.2	26	100	0	116	20	25	20	32	1.97
32892743--32892810	22	3.1	21	72	17	57	44	2	2	50	1.32
32893519--32893561	22	2.0	21	82	13	52	39	9	0	51	1.34
32894340--32894387	18	2.6	17	78	12	51	35	0	0	64	0.94
32895901--32895928	11	2.5	11	100	0	56	53	0	0	46	1.00
32914622--32914678	28	2.1	27	93	3	96	66	10	1	21	1.31
32915698--32915740	17	2.5	17	84	3	50	41	6	2	48	1.43
32920499--32920551	27	2.0	27	88	0	79	39	13	16	30	1.87
32922839--32922967	63	2.0	63	96	0	240	20	29	9	41	1.83
32925768--32925833	29	2.2	29	83	5	78	53	10	10	25	1.68
32926526--32926581	29	2.0	29	92	3	96	44	0	1	53	1.11
32927578--32927609	16	2.1	16	94	5	57	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32927583--32927615	16	2.1	16	88	5	50	57	0	0	42	0.98
32927552--32927629	20	3.7	20	65	26	52	53	0	0	46	1.00
32930140--32930200	31	2.0	31	93	6	106	36	6	18	39	1.76
32948840--32948866	2	13.5	2	100	0	54	48	0	0	51	1.00
32954760--32954864	50	2.1	49	91	5	167	21	18	17	42	1.89
32954867--32954997	40	3.3	40	86	1	174	23	13	29	33	1.93
32955065--32955180	50	2.3	50	86	4	162	19	21	20	37	1.94
32955065--32955198	50	2.7	49	81	5	153	21	19	20	38	1.94
32956091--32956119	15	2.0	15	93	6	51	0	17	0	82	0.66
32960469--32960502	17	2.0	17	100	0	68	35	29	0	35	1.58
32978595--32978647	3	17.7	3	76	7	54	33	5	32	28	1.81
32978612--32978657	24	1.9	24	90	0	74	36	4	34	23	1.75
32987774--32987855	30	2.7	30	80	10	89	28	4	4	62	1.37
32988554--32988605	23	2.2	23	86	3	68	26	5	3	63	1.34
32989881--32989942	19	3.2	20	80	8	67	33	1	4	59	1.28
32989881--32989933	20	2.8	20	82	8	65	37	0	3	58	1.16
32997546--32997704	28	5.7	27	68	20	69	19	16	7	55	1.64
32997540--32997659	62	2.0	62	81	3	145	19	15	6	58	1.59
32997753--32997819	34	1.9	36	84	6	93	19	14	5	59	1.56
32998949--32998988	14	2.8	15	75	24	50	67	0	0	32	0.91
33004517--33004542	7	3.7	7	100	0	52	88	0	0	11	0.52
33011408--33011453	19	2.4	19	82	7	58	36	0	6	56	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33012231--33012293	23	2.8	22	72	11	56	38	3	7	50	1.47
33012218--33012312	45	2.3	41	85	10	122	41	4	5	49	1.45
33012314--33012346	2	16.5	2	93	0	57	54	0	0	45	0.99
33012234--33012337	45	2.3	45	85	5	129	45	2	4	47	1.39
33013316--33013357	3	14.0	3	100	0	84	33	0	0	66	0.92
33013797--33014016	31	7.3	30	73	15	150	24	13	12	50	1.75
33013797--33014044	91	2.8	88	81	5	300	23	12	12	51	1.73
33014421--33014573	59	2.6	59	84	6	179	50	10	14	24	1.73
33020051--33020178	59	2.2	58	94	2	222	56	8	12	22	1.63
33021004--33021180	90	2.0	89	87	5	261	48	14	12	24	1.79
33023349--33023502	42	3.6	42	80	7	168	29	25	10	34	1.89
33025073--33025113	20	2.1	21	86	13	61	51	2	0	46	1.14
33025332--33025370	18	2.2	18	90	9	62	48	10	15	25	1.76
33026484--33026531	21	2.3	21	92	7	80	45	18	14	20	1.85
33026546--33026636	22	4.0	22	79	5	92	41	21	21	14	1.89
33031542--33031693	79	1.9	79	87	1	225	49	4	10	35	1.58
33032838--33032872	15	2.2	16	90	5	54	48	34	8	8	1.64
33032895--33032945	7	7.3	7	84	0	66	17	25	29	27	1.98
33034058--33034141	23	3.6	23	74	15	66	28	0	11	59	1.33
33034413--33034443	2	15.5	2	100	0	62	51	0	0	48	1.00
33040143--33040300	42	3.7	41	81	10	183	25	27	10	36	1.89
33040135--33040299	86	1.9	85	87	3	242	26	26	11	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33051505--33051696	42	4.5	42	79	8	199	27	26	10	35	1.90
33051524--33051694	43	4.0	44	81	6	188	26	28	10	35	1.89
33051505--33051669	86	1.9	85	86	3	233	26	26	10	36	1.89
33052046--33052087	21	1.9	21	85	9	57	28	19	2	50	1.60
33053259--33053288	12	2.6	12	94	5	53	33	0	16	50	1.46
33053326--33053366	20	2.1	21	86	13	61	51	2	0	46	1.14
33058640--33058820	90	2.0	90	96	0	335	23	24	17	34	1.96
33063399--33063586	51	3.6	51	81	5	191	28	23	14	32	1.95
33066929--33067087	80	2.0	80	87	3	234	50	4	10	35	1.56
33075193--33075240	21	2.3	21	88	0	69	31	12	20	35	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132