genome.fa.s12.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  96  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29545619--29545804	88	2.1	89	80	9	213	37	18	5	39	1.74
29545672--29545848	30	6.0	29	81	5	160	38	18	3	38	1.70
29545672--29545848	59	3.0	58	81	8	180	38	18	3	38	1.70
29554579--29554639	29	2.1	29	81	3	70	59	9	21	9	1.58
29555695--29555858	42	4.0	42	75	10	140	20	27	15	36	1.93
29555842--29555953	41	2.8	39	80	6	109	24	19	17	38	1.93
29555833--29555973	40	3.5	40	79	4	131	20	20	17	41	1.91
29555883--29555976	40	2.3	40	88	0	134	18	20	19	42	1.89
29556896--29556939	16	2.6	17	82	3	54	27	0	2	70	0.99
29566184--29566548	29	12.5	31	75	12	163	34	6	27	31	1.82
29566157--29566551	59	6.8	58	72	15	205	33	7	27	31	1.84
29566184--29566346	30	5.5	30	77	6	145	33	8	26	31	1.87
29566356--29566548	29	6.7	29	79	9	182	34	5	27	32	1.79
29566327--29566595	58	4.7	57	76	12	223	36	4	26	32	1.76
29566333--29566548	87	2.5	87	81	11	264	35	4	26	32	1.77
29566333--29566552	29	7.6	28	78	9	178	35	4	27	32	1.77
29566502--29566611	29	3.8	29	75	9	80	36	2	24	36	1.70
29566357--29566595	116	2.1	116	86	7	344	36	4	26	32	1.77
29568526--29568550	12	2.1	12	100	0	50	20	8	16	56	1.65
29568554--29568657	6	18.5	6	66	13	51	50	6	3	39	1.47
29568569--29568656	34	2.6	33	80	1	104	53	6	3	36	1.44
29568569--29568655	17	5.2	16	77	8	84	54	6	3	35	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29582436--29582474	21	1.9	21	85	15	55	17	7	5	69	1.32
29584527--29584751	52	4.3	51	86	3	290	27	16	24	32	1.96
29592326--29592407	24	3.4	24	91	0	137	30	24	20	24	1.99
29592388--29592490	27	3.8	27	86	1	125	36	25	14	23	1.93
29598801--29598854	26	2.1	26	89	6	83	29	25	18	25	1.98
29617406--29617776	59	6.2	59	87	3	539	34	5	28	31	1.80
29617406--29617776	120	3.1	119	90	3	570	34	5	28	31	1.80
29617763--29617869	30	3.5	30	86	6	137	37	3	21	37	1.72
29617406--29617837	120	3.6	117	85	7	421	34	5	27	32	1.79
29617759--29617879	30	4.1	29	82	11	131	35	4	23	36	1.75
29617940--29618285	161	2.1	162	86	3	475	45	13	15	25	1.83
29618009--29618358	161	2.2	160	80	6	386	48	12	15	22	1.79
29619716--29619758	14	3.1	14	81	18	63	18	13	25	41	1.88
29619714--29619761	13	3.4	15	83	16	75	18	12	27	41	1.86
29619845--29619935	6	15.8	6	68	22	54	51	1	3	43	1.25
29619846--29619938	17	5.5	16	76	17	73	50	1	3	45	1.25
29619862--29619938	11	6.8	11	76	10	75	50	1	3	44	1.28
29621360--29621496	58	2.3	58	85	7	179	48	1	1	48	1.19
29621436--29621503	21	3.1	22	79	10	68	51	1	1	45	1.19
29621410--29621494	31	3.1	26	67	25	66	47	0	2	50	1.14
29621591--29621684	44	2.1	44	86	7	127	37	24	5	32	1.78
29621666--29621721	16	3.5	16	87	0	85	28	28	5	37	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29624137--29624291	82	1.9	82	86	0	220	23	20	23	31	1.98
29624301--29624400	24	4.1	24	76	3	94	29	19	21	31	1.97
29629943--29629989	11	4.3	11	100	0	94	34	0	8	57	1.29
29634530--29634819	149	1.9	149	93	0	499	20	22	12	44	1.85
29640599--29640641	9	4.8	9	82	0	50	39	2	37	20	1.66
29642580--29642646	22	3.0	21	78	8	62	35	0	2	61	1.12
29643718--29643787	33	2.1	33	86	0	95	20	17	7	55	1.64
29644462--29644495	14	2.4	14	90	0	50	38	20	2	38	1.68
29645111--29645186	30	2.6	29	85	4	98	52	5	2	39	1.38
29651286--29651334	21	2.3	22	85	3	64	42	6	0	51	1.27
29655256--29655296	19	2.2	19	90	0	64	36	12	29	21	1.90
29661392--29661496	18	5.8	19	75	10	103	19	20	26	33	1.96
29661392--29661494	54	1.9	54	89	0	161	19	21	26	33	1.97
29661392--29661510	54	2.2	54	84	1	157	21	20	26	31	1.97
29661392--29661510	36	3.3	36	79	3	114	21	20	26	31	1.97
29674167--29674192	3	8.7	3	100	0	52	30	0	0	69	0.89
29674386--29674449	27	2.3	28	84	10	78	21	1	6	70	1.18
29674678--29674730	22	2.3	24	83	6	65	26	1	7	64	1.31
29678577--29678708	30	4.4	30	77	12	101	36	18	6	37	1.78
29678605--29678817	60	3.6	60	75	4	189	36	20	7	36	1.80
29678602--29678758	30	5.2	30	79	3	156	36	19	6	36	1.78
29678602--29678789	30	6.3	30	75	6	148	36	19	6	37	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29678770--29678834	29	2.2	29	83	8	78	29	29	7	33	1.85
29689309--29689663	30	11.9	30	76	8	235	34	25	3	36	1.75
29689309--29689655	90	3.9	89	81	6	276	34	26	4	35	1.75
29689449--29689678	89	2.6	87	82	6	255	34	25	3	35	1.75
29695745--29695940	49	4.0	48	70	9	146	36	19	26	18	1.94
29696220--29696475	41	6.0	41	82	4	235	31	20	18	28	1.97
29696220--29696475	82	3.0	83	81	5	280	31	20	18	28	1.97
29696524--29696692	85	2.0	85	81	2	196	36	17	23	22	1.95
29696608--29696701	48	2.0	48	82	4	118	37	15	24	22	1.93
29698629--29698880	30	8.4	29	79	9	215	36	23	1	38	1.66
29698653--29698869	90	2.4	90	84	6	262	35	26	1	36	1.67
29702444--29703140	124	5.6	124	83	4	809	39	16	20	22	1.92
29702444--29703140	248	2.8	248	85	4	890	39	16	20	22	1.92
29704875--29705155	30	9.4	30	74	14	183	34	22	9	34	1.86
29704869--29705155	60	4.8	60	75	11	239	33	23	9	33	1.86
29704905--29705135	90	2.6	90	74	13	224	34	22	9	34	1.85
29711878--29711935	18	3.2	18	77	0	53	44	18	15	20	1.86
29711888--29711937	18	2.8	18	78	0	55	50	16	14	20	1.78
29722836--29722887	17	2.9	18	80	13	72	80	0	19	0	0.71
29722837--29722898	23	2.7	23	85	7	81	82	0	17	0	0.67
29722837--29722888	6	8.8	6	81	10	63	80	0	19	0	0.71
29722836--29722898	17	3.9	17	72	14	53	82	0	17	0	0.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29723893--29724119	99	2.3	101	81	8	250	34	21	18	25	1.96
29723891--29724231	101	3.4	100	79	9	338	35	20	19	24	1.95
29724242--29725017	81	9.5	81	86	2	964	32	27	17	22	1.96
29725910--29725964	17	3.2	17	82	14	53	18	3	5	72	1.18
29725899--29725962	27	2.3	28	79	15	71	20	3	4	71	1.17
29729348--29729395	21	2.3	21	100	0	96	33	20	18	27	1.96
29730065--29730215	44	3.5	43	82	7	137	23	25	9	41	1.85
29730095--29730215	44	2.8	44	87	2	172	23	24	10	40	1.87
29731873--29732064	52	3.7	52	92	0	321	24	14	26	34	1.93
29738482--29738529	18	2.8	17	90	6	78	16	10	14	58	1.63
29738483--29738539	17	3.3	17	85	4	51	19	10	12	57	1.63
29743169--29743261	37	2.5	37	85	0	132	25	33	18	22	1.97
29753587--29753647	24	2.5	26	79	12	67	67	0	29	3	1.07
29760457--29760550	40	2.3	40	90	0	152	24	21	9	44	1.82
29760527--29760770	44	5.6	44	88	4	345	24	25	9	40	1.85
29765426--29765484	3	19.7	3	96	0	91	28	0	5	66	1.13
29765529--29765571	19	2.3	19	80	8	52	20	0	4	74	1.00
29771930--29771969	20	2.0	20	85	9	55	47	0	15	37	1.45
29775636--29775715	10	8.3	10	69	14	53	63	1	0	35	1.02
29775678--29775721	17	2.3	20	88	11	67	65	0	0	34	0.93
29775678--29775718	18	2.2	20	86	8	59	65	0	0	34	0.93
29775636--29775732	42	2.2	43	84	14	119	63	2	0	34	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29777059--29777146	27	3.3	27	83	3	115	19	18	36	26	1.94
29777059--29777163	54	1.9	54	81	7	124	21	19	34	24	1.96
29777205--29777251	20	2.3	20	85	7	60	46	6	17	29	1.72
29780255--29780319	23	2.8	24	88	2	96	23	6	21	49	1.72
29780579--29780643	6	10.5	6	76	12	60	63	12	1	23	1.37
29780598--29780663	20	3.4	20	75	8	82	62	10	1	25	1.37
29780580--29780669	38	2.4	38	94	0	162	63	12	1	23	1.35
29780623--29780675	26	2.0	26	92	0	88	58	9	1	30	1.40
29781164--29781225	24	2.6	24	73	0	61	12	30	35	20	1.91
29781203--29781228	6	4.3	6	100	0	52	0	34	50	15	1.45

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132