genome.fa.s12.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  107  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32537366--32537470	41	2.5	44	75	10	110	37	17	19	26	1.93
32537367--32537498	43	3.1	41	78	9	124	38	15	17	28	1.90
32538846--32538947	43	2.4	41	85	6	132	32	0	7	58	1.33
32541341--32541379	20	2.0	19	95	5	69	56	2	0	41	1.13
32542787--32542825	3	13.0	3	100	0	78	66	0	0	33	0.92
32545482--32545516	18	1.9	18	94	0	61	54	2	0	42	1.15
32546165--32547071	100	9.1	100	91	0	1395	15	25	19	39	1.91
32546165--32547071	399	2.3	400	91	0	1467	15	25	19	39	1.91
32547063--32547382	98	3.3	97	83	1	370	15	24	20	39	1.91
32546165--32547207	399	2.6	398	86	4	1226	14	25	20	39	1.91
32555161--32555186	7	3.7	7	100	0	52	38	15	30	15	1.88
32555201--32555240	11	3.5	11	83	12	53	12	25	42	20	1.86
32555410--32555444	18	1.9	18	88	0	52	57	2	0	40	1.14
32555415--32555490	6	12.0	6	77	10	71	53	3	0	42	1.19
32555541--32555578	3	12.7	3	100	0	76	68	0	0	31	0.90
32565533--32565811	138	2.0	138	97	0	531	28	3	18	49	1.64
32568503--32568710	65	3.2	64	85	4	274	40	10	17	30	1.84
32570298--32570381	42	2.0	42	90	0	132	30	0	20	48	1.50
32578628--32578661	13	2.5	13	90	4	50	70	2	0	26	1.01
32578755--32578783	13	2.1	14	93	6	51	55	6	0	37	1.27
32587579--32587621	16	2.7	15	85	7	50	72	4	0	23	1.04
32597321--32597399	37	2.1	37	81	6	88	31	25	18	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32598143--32598185	2	22.5	2	90	9	72	46	0	0	53	1.00
32604504--32604532	6	4.8	6	100	0	58	0	13	0	86	0.58
32606882--32606919	20	1.9	20	84	10	51	44	5	10	39	1.61
32610609--32610658	24	2.1	24	88	0	73	52	4	6	38	1.45
32612381--32612432	24	2.2	24	85	0	68	57	5	1	34	1.33
32612730--32612777	23	2.2	23	85	7	64	54	20	12	12	1.70
32613450--32613490	19	2.2	19	100	0	82	29	24	9	36	1.87
32613614--32613652	16	2.4	16	82	0	51	17	2	10	69	1.28
32618520--32618555	8	4.4	8	89	3	54	38	0	0	61	0.96
32621531--32622156	68	9.2	69	84	8	396	34	18	21	25	1.96
32621521--32622302	170	4.6	169	93	2	1005	35	18	21	25	1.96
32621557--32622436	238	3.7	239	90	4	1402	34	18	21	25	1.96
32622135--32622436	68	4.4	68	94	1	505	34	17	21	26	1.95
32621521--32622374	408	2.1	408	99	0	1683	34	18	21	25	1.96
32622735--32622807	6	12.0	6	75	17	62	46	2	1	49	1.24
32624356--32624669	162	1.9	163	88	3	474	25	14	12	46	1.80
32624356--32624691	163	2.1	161	86	4	417	25	15	12	46	1.81
32624762--32624933	30	5.7	30	88	5	258	36	22	4	36	1.75
32624774--32625193	59	7.1	60	82	12	256	32	25	5	36	1.78
32624983--32625138	30	5.3	29	66	14	86	30	26	5	36	1.80
32624915--32625199	118	2.4	118	88	4	409	30	27	5	36	1.81
32624946--32625192	29	8.4	29	67	16	127	31	26	4	37	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32645408--32645435	6	4.7	6	100	0	56	35	17	32	14	1.90
32647230--32647464	45	5.2	45	90	1	319	28	23	24	23	2.00
32647230--32647475	90	2.7	90	88	2	352	28	22	24	23	1.99
32649241--32649282	21	1.9	23	85	9	61	7	26	2	64	1.32
32651005--32651037	13	2.6	13	90	4	50	36	3	0	60	1.12
32654918--32654968	24	2.2	23	86	10	68	37	0	3	58	1.16
32656565--32656613	19	2.6	19	93	0	80	38	20	6	34	1.77
32657730--32657947	40	5.4	40	78	4	224	21	16	22	39	1.92
32657725--32657987	80	3.3	79	82	4	296	23	16	21	39	1.92
32657738--32657958	120	1.8	120	81	1	273	22	17	21	38	1.94
32658440--32658598	53	3.0	52	77	7	140	29	31	15	23	1.95
32662068--32662219	28	5.3	28	68	19	89	33	2	28	34	1.71
32662060--32662219	29	5.6	29	68	14	82	35	2	28	34	1.71
32662017--32662245	59	4.0	57	81	8	216	34	3	29	32	1.76
32662219--32662304	29	3.0	29	78	8	86	32	6	24	36	1.82
32662395--32662714	162	2.0	162	88	0	478	44	12	16	26	1.83
32664274--32664339	6	11.7	6	70	12	50	56	3	1	39	1.24
32664274--32664342	11	6.2	11	72	12	52	53	2	1	42	1.24
32664276--32664312	17	2.2	17	95	0	65	54	5	2	37	1.38
32664305--32664348	17	2.6	18	85	10	65	59	4	0	36	1.18
32664658--32665180	76	6.9	76	89	3	745	33	18	14	33	1.91
32677318--32677596	29	9.5	28	67	20	126	34	3	29	32	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32677523--32677651	30	4.4	29	72	21	101	37	1	25	35	1.66
32677318--32677626	59	5.3	59	85	5	371	33	3	29	33	1.74
32677724--32678095	162	2.3	162	85	1	487	41	13	18	25	1.88
32679686--32679719	16	2.1	17	88	5	52	52	5	2	38	1.41
32679771--32679842	29	2.5	29	84	8	94	36	22	18	23	1.95
32679771--32679882	29	3.9	28	77	6	91	37	20	18	23	1.94
32679954--32680106	40	3.8	40	74	5	148	23	15	20	40	1.91
32679962--32680113	80	1.9	78	85	5	207	25	15	18	40	1.89
32680475--32680694	55	4.1	55	83	6	281	27	35	16	20	1.94
32688444--32688489	20	2.3	20	96	0	83	47	15	19	17	1.82
32689164--32689213	14	3.5	15	78	15	52	62	0	2	36	1.07
32694488--32694533	4	12.0	4	81	9	60	21	0	28	50	1.49
32694501--32694555	4	13.8	4	88	0	56	10	0	38	50	1.37
32694501--32694555	6	9.2	6	83	0	56	10	0	38	50	1.37
32694489--32694553	8	8.4	8	86	6	71	13	0	35	50	1.42
32699850--32699950	51	2.0	51	92	1	168	31	13	9	44	1.77
32714746--32714892	61	2.4	61	77	2	145	42	14	17	25	1.88
32719800--32719832	2	17.0	2	87	6	50	48	0	3	48	1.17
32719799--32719832	17	2.0	17	94	0	59	50	0	2	47	1.16
32719802--32719831	15	2.0	15	93	0	51	50	0	3	46	1.18
32721624--32721665	18	2.3	19	83	8	59	50	7	2	40	1.43
32721732--32721783	26	2.0	27	88	3	79	30	5	3	59	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32726384--32726415	15	2.1	15	100	0	64	37	15	0	46	1.46
32736623--32736652	3	10.0	3	100	0	60	33	0	0	66	0.92
32736980--32737027	23	2.1	23	84	7	62	41	10	14	33	1.80
32737524--32737562	21	1.9	20	89	5	60	7	12	0	79	0.93
32739187--32739247	28	2.2	28	94	5	106	24	11	32	31	1.91
32739224--32739362	58	2.4	59	79	6	149	35	6	25	33	1.81
32739272--32739411	59	2.4	59	81	2	156	35	5	23	35	1.79
32739370--32739458	29	3.1	28	87	9	117	32	2	29	35	1.70
32739318--32739454	59	2.3	59	82	3	161	33	3	26	36	1.74
32739407--32739506	51	1.9	52	82	6	123	40	3	22	35	1.69
32739436--32739480	22	2.0	22	86	0	63	42	2	17	37	1.62
32740497--32740526	10	3.0	10	95	0	51	43	0	0	56	0.99
32741270--32741364	17	5.7	17	77	17	83	51	4	3	41	1.37
32741270--32741345	6	12.8	6	77	12	77	48	3	2	44	1.35
32741285--32741344	30	2.0	30	93	0	102	48	1	3	46	1.28
32741280--32741364	24	3.7	23	78	6	82	52	3	3	40	1.36
32760237--32760346	31	3.6	30	73	16	93	50	10	14	24	1.75
32760209--32760372	60	2.8	59	82	4	188	51	10	12	25	1.71
32766187--32766240	24	2.2	24	80	6	65	48	0	0	51	1.00
32767503--32767540	19	2.0	20	90	10	62	28	0	7	63	1.23
32767495--32767543	24	2.1	22	81	7	53	30	0	6	63	1.19
32768560--32768590	11	2.8	11	95	0	53	35	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32769084--32769135	24	2.2	24	85	0	68	55	3	3	36	1.36
32769493--32769546	28	1.9	28	84	0	72	27	5	24	42	1.76
32771048--32771085	20	1.9	20	100	0	76	39	10	7	42	1.69
32776003--32776111	54	2.0	54	100	0	218	38	14	15	31	1.88
32776284--32776405	28	4.3	29	77	14	119	54	4	18	21	1.62
32776284--32776403	56	2.1	57	83	10	149	55	4	19	21	1.60
32778525--32778563	20	1.9	21	89	5	62	38	5	2	53	1.37
32782030--32782144	56	2.1	56	100	0	230	41	12	13	32	1.82
32782124--32782161	20	1.9	20	84	10	51	26	7	0	65	1.19
32784097--32784164	15	4.4	15	74	18	59	45	0	1	52	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132