genome.fa.s12.2.7.7.80.10.50.1000.58.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  58  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16152312--16152382	32	2.2	32	100	0	142	16	18	15	49	1.80
16152715--16152757	18	2.4	18	88	7	61	46	0	0	53	1.00
16157613--16157645	13	2.5	13	100	0	66	15	6	12	66	1.42
16161342--16161424	24	3.5	24	93	0	148	22	20	26	30	1.98
16170468--16170511	18	2.4	18	92	0	70	38	9	22	29	1.85
16172806--16172858	19	2.8	19	75	11	56	66	1	7	24	1.28
16174046--16174104	25	2.3	27	72	16	63	22	8	32	37	1.84
16177323--16177369	19	2.6	18	77	12	51	57	4	12	25	1.54
16181816--16181848	15	2.1	16	88	5	50	48	3	0	48	1.17
16185227--16185305	6	13.3	6	75	2	79	41	3	1	53	1.27
16185227--16185320	24	4.2	23	76	16	81	41	4	3	51	1.37
16187394--16187655	30	8.9	29	78	9	237	37	23	2	37	1.68
16187406--16187655	59	4.2	57	82	11	283	38	22	2	37	1.66
16187407--16187686	117	2.4	117	81	12	315	37	22	2	36	1.69
16193098--16193145	6	7.7	6	84	9	51	85	8	6	0	0.74
16193079--16193140	21	3.1	19	84	9	79	85	8	6	0	0.74
16193079--16193145	26	2.5	26	77	20	68	85	7	7	0	0.76
16193076--16193145	16	4.4	16	80	10	72	84	8	7	0	0.78
16194361--16194762	49	8.2	49	84	3	400	39	24	24	11	1.88
16194361--16194760	146	2.7	147	80	3	403	39	25	24	11	1.88
16194361--16194762	98	4.1	98	81	3	443	39	24	24	11	1.88
16194361--16194762	195	2.1	197	85	1	540	39	24	24	11	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16194897--16195189	103	2.8	103	89	1	426	35	15	18	31	1.91
16195295--16195731	194	2.2	197	85	3	576	32	18	25	23	1.97
16195620--16195961	158	2.2	158	91	1	560	33	21	22	21	1.97
16198289--16198698	30	13.9	29	74	9	271	35	23	2	37	1.70
16198301--16198573	58	4.6	60	81	5	258	38	22	2	36	1.67
16205152--16205228	15	5.2	14	72	17	59	36	2	1	59	1.19
16218444--16218509	26	2.5	26	97	0	123	21	28	27	22	1.99
16219761--16219808	3	16.3	3	91	4	80	68	0	0	31	0.90
16220866--16220909	22	2.0	23	82	13	56	59	18	0	22	1.38
16227516--16227553	15	2.4	16	82	4	51	18	0	5	76	0.97
16227947--16228022	32	2.3	34	86	9	120	39	1	0	59	1.06
16227963--16228041	32	2.5	32	93	2	133	43	1	0	55	1.07
16235190--16235222	14	2.5	13	86	13	50	39	0	0	60	0.97
16236099--16236876	167	4.9	152	91	3	1047	33	17	14	33	1.91
16236550--16236722	91	1.9	89	94	2	301	32	18	14	34	1.91
16236689--16236798	38	2.9	37	73	14	125	36	15	14	33	1.88
16236098--16236630	76	7.0	76	93	0	879	33	17	15	33	1.91
16237059--16237179	51	2.4	50	86	2	154	14	23	20	42	1.88
16237059--16237201	51	2.8	51	80	4	121	14	23	20	41	1.89
16237191--16237394	50	4.1	49	67	13	139	13	23	22	41	1.89
16237145--16237452	150	2.1	150	93	0	526	14	21	22	41	1.89
16237217--16237443	50	4.5	49	67	10	136	14	21	20	43	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16238663--16238688	10	2.6	10	100	0	52	0	11	0	88	0.52
16245804--16245836	14	2.5	13	86	13	50	39	0	0	60	0.97
16251515--16251852	172	2.0	164	89	6	518	42	7	10	39	1.68
16253528--16253557	14	2.1	14	100	0	60	23	26	13	36	1.92
16256398--16256461	27	2.4	27	100	0	128	32	20	31	15	1.94
16258468--16259082	148	4.1	144	81	13	718	43	2	9	43	1.52
16258708--16259027	163	2.0	163	89	5	493	42	2	10	44	1.51
16259052--16259095	22	2.0	22	86	0	61	40	0	13	45	1.44
16259642--16259698	16	3.3	18	76	18	59	22	8	3	64	1.37
16259920--16260443	140	3.8	138	84	7	605	27	18	21	32	1.97
16260215--16260443	126	1.8	126	90	1	370	28	18	21	31	1.97
16260702--16260731	14	2.1	15	93	6	53	53	20	0	26	1.46
16263528--16263582	27	2.0	28	92	7	94	43	23	3	29	1.71
16263980--16264097	26	4.5	26	89	0	164	33	21	18	27	1.96
16266853--16267091	52	4.6	52	87	3	340	25	15	23	35	1.94
16266853--16267092	103	2.3	103	86	3	349	25	15	23	35	1.94
16281956--16281995	18	2.2	18	90	0	62	40	25	17	17	1.91
16294801--16294841	18	2.3	18	91	4	66	17	17	12	53	1.72
16294811--16294849	18	2.2	18	90	4	62	15	17	12	53	1.72
16295445--16295494	17	2.8	18	84	6	75	84	0	16	0	0.63
16295429--16295491	25	2.4	27	86	5	85	79	0	19	1	0.82
16296373--16296632	143	1.8	143	99	0	511	31	14	29	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16297807--16297860	24	2.5	21	83	16	74	62	0	37	0	0.95
16297811--16297857	24	2.0	22	92	8	76	63	0	36	0	0.94
16298910--16298959	20	2.6	19	84	9	57	56	0	6	38	1.24
16300753--16300819	26	2.5	26	87	2	98	32	25	22	19	1.97
16312471--16312509	20	2.0	19	85	5	51	33	15	2	48	1.58
16318077--16318126	22	2.3	22	86	6	66	50	2	6	42	1.38
16318036--16318324	157	1.8	157	86	3	420	43	2	10	42	1.53
16318297--16318354	18	3.2	19	72	16	59	46	0	10	43	1.38
16318297--16318368	36	2.0	35	84	10	92	43	0	9	47	1.36
16318192--16318582	135	2.8	141	83	9	445	42	3	9	44	1.55
16318432--16318492	19	3.1	18	71	17	50	47	1	11	39	1.50
16319569--16320082	126	3.8	126	79	12	544	27	20	21	30	1.98
16319695--16320082	142	2.8	141	78	2	465	26	19	22	30	1.98
16320480--16320552	21	3.5	20	70	26	55	49	34	1	15	1.53
16320557--16320621	27	2.4	27	82	5	78	46	26	4	23	1.71
16320626--16320659	7	4.9	7	85	0	50	29	2	26	41	1.70
16320626--16320673	21	2.3	20	85	3	60	31	4	25	39	1.74
16320871--16321178	36	8.6	36	78	8	270	26	21	15	35	1.94
16320871--16321178	71	4.3	70	79	10	284	26	21	15	35	1.94
16320871--16321135	145	1.8	144	84	5	365	27	20	16	36	1.93
16321915--16321952	20	1.9	20	88	0	58	23	0	28	47	1.52
16325375--16325399	13	1.9	13	100	0	50	24	52	8	16	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16326847--16327144	29	10.2	29	77	11	245	34	25	2	38	1.69
16338977--16339195	77	2.8	78	83	1	287	22	32	19	25	1.97
16338977--16339311	78	4.3	78	78	7	279	23	34	20	22	1.97
16339080--16339312	117	2.0	117	88	1	342	24	34	20	21	1.97
16339087--16339331	39	6.3	39	77	1	231	24	33	19	21	1.97
16340431--16340463	7	4.7	7	92	0	57	39	0	0	60	0.97
16341513--16341699	30	6.3	30	80	8	188	35	21	1	40	1.63
16341505--16341665	29	5.4	29	82	7	155	37	21	0	40	1.58
16341513--16341699	59	3.2	58	82	2	212	35	21	1	40	1.63
16341505--16341675	88	1.9	89	84	8	233	37	22	1	39	1.62
16343282--16343886	38	16.4	37	76	10	400	28	17	13	40	1.88
16343270--16343773	73	6.8	70	74	9	210	28	17	14	40	1.88
16343307--16343540	107	2.1	108	80	9	262	26	18	13	41	1.88
16343282--16343891	36	16.4	36	76	11	310	28	17	13	40	1.88
16343273--16343882	74	8.3	73	75	9	404	28	17	13	40	1.88
16343554--16343882	149	2.2	151	80	6	382	31	18	11	38	1.87
16343282--16343886	113	5.4	114	76	8	437	28	17	13	40	1.88
16350391--16350438	18	2.6	18	84	15	55	33	6	2	58	1.35
16350408--16350554	59	2.6	54	78	13	145	41	8	0	49	1.37
16350492--16350554	2	32.0	2	75	3	56	46	6	0	47	1.28
16357985--16358123	24	5.9	24	91	0	192	23	17	17	41	1.90
16358833--16358863	16	1.9	16	100	0	62	25	19	9	45	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16368086--16368152	24	2.8	24	88	4	100	25	26	26	20	1.99
16371565--16371589	13	1.9	13	100	0	50	68	24	8	0	1.16
16372462--16372678	60	3.6	61	77	6	210	38	21	6	33	1.79
16372506--16372674	90	1.9	90	82	7	218	39	19	5	35	1.76
16372462--16372678	30	7.2	29	76	10	150	38	21	6	33	1.79
16373422--16373495	36	2.1	36	94	0	130	29	8	17	44	1.77
16382305--16382426	62	2.0	62	96	0	226	25	6	33	34	1.82
16384480--16384781	79	3.8	79	93	0	478	30	28	17	24	1.97
16386159--16386333	86	2.0	88	82	10	216	40	19	2	37	1.67
16386155--16386337	30	6.2	30	76	8	162	38	19	3	37	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132