genome.fa.s12.2.7.7.80.10.50.1000.62.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  62  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17466158--17466380	72	3.1	71	80	9	240	29	21	17	31	1.96
17466825--17466869	21	2.1	21	83	0	54	37	24	15	22	1.93
17467384--17467441	18	3.2	18	85	2	62	22	29	17	31	1.96
17469055--17469113	24	2.5	24	94	0	100	15	27	16	40	1.89
17469619--17469931	156	2.0	156	92	0	527	45	16	9	28	1.79
17473639--17473682	15	2.9	15	79	0	52	27	25	25	22	2.00
17473677--17473720	15	2.9	15	75	0	52	27	25	20	27	1.99
17473659--17473720	30	2.1	30	93	0	106	27	22	24	25	2.00
17476479--17476513	9	3.9	9	84	0	52	28	11	20	40	1.87
17476477--17476514	18	2.1	18	95	0	67	34	10	18	36	1.85
17477137--17477181	19	2.4	18	82	7	54	42	0	11	46	1.39
17482832--17482893	23	2.5	25	79	12	83	41	9	9	38	1.71
17483290--17483366	24	3.3	24	85	8	97	63	1	3	31	1.20
17484463--17484494	11	2.9	11	90	0	55	34	0	9	56	1.32
17496989--17497023	17	2.1	17	94	0	61	40	11	25	22	1.88
17507452--17507506	27	2.1	27	90	6	87	41	30	0	27	1.56
17507493--17507524	12	2.7	12	90	0	55	62	31	0	6	1.20
17515649--17515721	37	2.1	37	80	14	84	24	6	30	38	1.81
17524090--17524142	21	2.5	21	75	6	54	33	24	9	32	1.87
17524771--17524937	58	2.8	59	85	4	219	31	21	14	32	1.93
17524888--17525173	156	1.8	156	90	3	459	37	23	12	26	1.91
17524889--17525173	52	5.5	52	88	0	408	37	23	12	26	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17530894--17530943	12	4.2	12	80	10	57	2	34	0	64	1.05
17539867--17539920	3	19.3	3	78	14	62	0	27	0	72	0.85
17539869--17539922	17	3.1	17	89	7	74	0	25	0	74	0.83
17541690--17541737	24	2.0	25	84	12	64	70	4	8	16	1.27
17547345--17547378	18	1.9	17	88	5	50	55	8	11	23	1.63
17550384--17550448	21	3.1	21	79	0	58	36	24	13	24	1.92
17551117--17551230	60	1.9	61	83	5	151	33	19	12	35	1.89
17551182--17551367	52	3.6	52	85	1	257	35	24	13	26	1.93
17554469--17554559	26	3.4	26	71	14	76	27	14	25	32	1.94
17554474--17554616	55	2.6	55	82	4	144	29	16	23	30	1.97
17555458--17555505	25	1.9	25	95	0	87	25	20	18	35	1.95
17557959--17557989	7	4.4	7	100	0	62	41	16	12	29	1.85
17562080--17562107	5	5.6	5	100	0	56	0	17	0	82	0.68
17567242--17567291	24	2.1	24	92	7	84	34	16	18	32	1.92
17569964--17570169	62	3.3	61	76	16	226	26	19	17	36	1.94
17570007--17570168	32	5.2	32	66	20	117	27	19	17	35	1.94
17569911--17570182	125	2.2	124	87	4	388	25	21	16	36	1.94
17573440--17573641	40	5.1	40	84	1	262	24	17	26	30	1.97
17582674--17582737	19	3.3	19	68	20	60	43	7	0	48	1.32
17582674--17582740	23	3.2	23	66	33	69	43	7	0	49	1.31
17582674--17582752	39	2.0	39	100	0	158	46	7	0	45	1.31
17582854--17582898	23	2.0	23	82	8	56	24	0	8	66	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17584284--17584325	12	3.6	12	77	6	50	42	9	0	47	1.36
17590927--17590984	25	2.5	23	75	8	55	51	1	1	44	1.21
17591365--17591441	29	2.6	30	87	6	122	53	0	0	46	1.00
17597157--17597195	21	1.9	21	89	5	62	12	12	7	66	1.43
17600165--17600194	10	3.1	10	95	4	53	83	0	16	0	0.65
17600165--17600194	15	1.9	15	93	6	51	83	0	16	0	0.65
17608745--17608790	3	15.7	3	82	13	60	0	32	0	67	0.91
17610446--17610493	24	2.0	24	84	12	62	70	6	8	14	1.31
17622499--17622537	21	2.0	21	85	10	55	43	7	5	43	1.55
17625903--17626169	30	9.2	29	75	13	187	34	1	26	37	1.68
17625950--17626208	30	8.8	29	78	11	197	36	1	25	35	1.67
17625913--17626109	86	2.3	85	81	8	211	34	2	27	35	1.71
17625903--17626174	116	2.3	117	78	10	297	34	1	27	36	1.68
17625903--17626199	60	5.1	60	75	10	242	35	2	26	36	1.68
17625979--17626206	30	7.7	30	80	5	225	37	0	25	36	1.62
17627938--17628000	6	10.8	6	70	13	51	55	1	3	39	1.25
17627936--17628010	17	4.4	16	77	11	78	57	2	2	37	1.27
17628415--17629095	208	3.3	208	86	3	831	23	22	17	36	1.94
17628989--17629139	37	3.8	37	72	17	131	25	26	14	33	1.94
17628953--17629223	85	3.2	85	87	2	357	27	23	14	34	1.93
17629394--17629553	39	4.1	39	81	1	178	23	18	32	25	1.97
17629410--17629557	78	1.9	78	87	5	219	24	20	31	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17629901--17630113	49	4.3	49	77	11	202	18	32	15	32	1.93
17629879--17630064	99	1.9	98	82	8	234	17	32	17	32	1.93
17629853--17630123	148	1.8	148	91	0	443	18	32	15	33	1.92
17630942--17631029	16	5.2	16	72	15	54	10	7	1	80	0.95
17630958--17631035	18	4.4	17	79	7	61	12	5	1	80	0.93
17630942--17631002	25	2.5	24	82	12	70	9	8	1	80	0.98
17630958--17631029	35	2.1	34	89	2	108	12	5	1	80	0.94
17630960--17631035	39	1.9	39	84	10	102	13	5	1	80	0.95
17646847--17646896	23	2.2	23	85	0	64	60	8	2	30	1.37
17647322--17647363	17	2.5	17	92	0	66	38	0	4	57	1.20
17647322--17647375	17	3.2	16	84	5	63	37	3	3	55	1.35
17647413--17647451	12	3.2	12	85	0	51	46	35	2	15	1.60
17648495--17648544	17	2.7	18	82	17	59	14	28	48	10	1.75
17649087--17649229	30	4.8	30	81	9	123	36	23	4	35	1.76
17649097--17649374	58	4.7	59	78	7	280	36	24	2	36	1.71
17649085--17649403	29	10.9	30	79	6	253	34	25	3	36	1.73
17651833--17651873	15	2.4	18	76	15	52	41	4	9	43	1.59
17651840--17651869	15	2.1	15	93	6	53	40	6	13	40	1.71
17661798--17661839	7	5.7	7	79	20	50	83	0	16	0	0.65
17661786--17661838	17	3.2	17	84	10	65	81	0	16	1	0.79
17661785--17661839	24	2.2	24	84	9	67	80	0	18	1	0.81
17662773--17663125	49	7.2	48	73	5	222	35	15	27	22	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17663014--17663177	49	3.3	49	80	0	184	34	16	26	22	1.95
17662741--17663176	98	4.5	98	75	3	369	35	14	27	22	1.93
17663393--17663563	38	4.4	37	83	8	180	34	25	13	26	1.93
17663394--17663966	81	7.1	78	78	8	264	31	26	16	26	1.96
17663508--17664545	123	8.5	125	82	5	1124	30	26	16	26	1.97
17663508--17664545	81	12.7	83	81	6	1063	30	26	16	26	1.97
17664393--17664569	82	2.1	87	79	9	199	35	20	16	27	1.94
17663508--17664545	42	25.4	42	81	6	1132	30	26	16	26	1.97
17665616--17665652	18	2.1	18	90	10	58	27	0	0	72	0.84
17671352--17671465	40	2.8	40	86	0	165	31	17	24	26	1.97
17683179--17683221	20	2.1	21	86	4	61	46	0	2	51	1.13
17688880--17688953	24	2.9	26	78	10	80	60	1	4	33	1.24
17688880--17688969	29	3.4	25	78	12	74	60	2	3	34	1.26
17690124--17690158	15	2.4	15	90	4	54	5	8	14	71	1.29
17690834--17691211	114	3.3	113	84	3	447	22	26	17	33	1.96
17691240--17691519	122	2.3	122	82	2	330	22	21	17	37	1.94
17691415--17691608	106	1.8	106	82	4	248	22	21	17	38	1.93
17691648--17691731	43	2.0	43	85	2	116	29	14	22	33	1.93
17692138--17692475	49	6.9	48	67	11	125	20	30	15	33	1.94
17692087--17692673	98	6.0	99	79	7	509	19	29	15	35	1.93
17692251--17692673	49	8.6	49	65	11	156	19	29	14	36	1.92
17692111--17692673	196	2.9	197	78	9	576	19	29	14	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17693627--17693669	8	5.0	8	78	15	50	0	18	0	81	0.69
17694556--17694585	9	3.4	9	90	9	53	0	20	0	80	0.72
17696051--17696079	11	2.6	11	100	0	58	6	48	20	24	1.74
17700669--17700885	51	4.3	50	87	4	267	34	15	22	28	1.94
17700657--17700885	102	2.2	102	88	1	325	34	15	22	27	1.95
17704920--17704992	37	2.0	37	89	2	112	32	17	5	43	1.72
17710204--17710310	34	3.2	34	91	1	153	44	14	6	34	1.70
17710917--17711003	24	3.6	24	92	0	129	51	9	12	26	1.69
17712922--17712984	24	2.6	25	85	9	87	50	9	11	28	1.69
17713866--17713905	2	20.0	2	100	0	80	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132