genome.fa.s12.2.7.7.80.10.50.1000.81.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  81  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23893779--23893863	11	7.7	11	69	17	52	70	0	25	3	1.03
23893774--23893836	30	2.1	31	82	8	76	69	0	25	4	1.07
23893800--23893863	31	2.2	29	82	15	80	70	0	26	3	1.02
23893819--23893870	13	4.2	12	80	14	61	69	0	26	3	1.06
23893784--23893859	24	3.4	24	71	22	76	69	0	26	3	1.05
23894837--23895147	160	1.9	159	84	1	408	41	13	16	29	1.86
23894997--23906726	215	55.4	213	77	9	9734	39	14	17	28	1.88
23897438--23897807	198	1.9	197	82	3	476	40	13	15	30	1.87
23898598--23920884	430	52.1	428	75	9	15248	38	14	18	28	1.89
23902329--23911993	215	45.8	196	72	14	1492	39	14	18	28	1.89
23906126--23906726	217	2.8	213	85	4	783	38	14	18	28	1.90
23906730--23912003	215	24.8	214	79	7	4997	39	14	18	28	1.90
23910780--23912003	213	5.8	212	79	7	1202	38	14	19	27	1.90
23910781--23912003	426	2.9	423	81	6	1368	38	14	19	27	1.90
23912114--23920877	215	41.3	214	80	5	8978	38	14	18	28	1.90
23929223--23929247	2	12.5	2	100	0	50	52	0	0	48	1.00
23930327--23930371	21	2.1	21	100	0	90	40	15	0	44	1.47
23930374--23930427	15	3.3	15	74	18	54	44	0	1	53	1.11
23930465--23930495	16	2.0	16	93	6	55	38	0	0	61	0.96
23930632--23930671	18	2.2	18	86	0	53	55	0	0	45	0.99
23935782--23936007	111	2.0	111	83	9	283	49	5	21	23	1.71
23935984--23936223	131	1.8	130	89	0	372	43	7	18	30	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23940509--23940575	33	2.1	32	86	5	91	55	23	0	20	1.44
23940561--23940621	22	2.8	20	74	13	59	37	34	3	24	1.72
23944076--23944182	31	3.5	31	73	15	107	25	14	13	47	1.79
23944076--23944264	60	3.2	58	85	6	229	23	15	14	47	1.82
23944473--23944605	59	2.2	58	80	6	142	24	16	11	47	1.79
23944828--23944905	31	2.6	30	84	10	104	47	12	12	26	1.78
23944766--23944879	59	1.9	59	83	3	149	50	12	14	21	1.76
23952375--23952459	38	2.2	37	84	10	109	29	22	21	27	1.99
23955930--23956007	37	2.1	37	92	0	129	25	30	19	24	1.98
23955944--23956037	37	2.5	37	85	0	107	30	29	15	23	1.96
23956016--23956126	38	3.0	37	79	10	118	31	23	13	31	1.93
23956116--23956168	26	2.0	26	88	0	79	28	20	22	28	1.99
23956968--23956998	16	1.9	16	93	0	53	22	16	0	61	1.34
23960051--23960084	17	2.0	17	88	0	50	17	20	8	52	1.71
23961114--23961203	37	2.4	37	87	7	128	26	23	22	27	1.99
23963479--23963553	21	3.6	21	75	7	62	32	22	12	33	1.91
23980313--23980416	47	2.2	47	94	1	181	41	23	13	22	1.89
23980143--23980700	277	2.0	277	96	0	1017	36	23	13	26	1.92
23980590--23980724	47	2.8	47	86	2	180	42	22	12	21	1.86
23981727--23981793	29	2.2	30	84	12	84	31	1	1	65	1.10
23983950--23984000	23	2.2	24	86	10	79	37	0	3	58	1.16
23983960--23984009	23	2.2	23	96	0	91	36	0	4	60	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23983951--23983994	17	2.6	17	92	0	70	34	0	4	61	1.16
23983966--23984010	10	4.1	11	80	8	56	37	0	4	57	1.19
23990567--23990616	3	16.7	3	100	0	100	66	0	34	0	0.92
23992882--23993338	78	5.9	78	87	0	590	23	29	20	26	1.99
23992881--23993606	78	9.3	76	80	6	476	23	30	19	25	1.98
23992879--23993531	156	4.2	155	81	4	602	23	30	20	26	1.98
23992879--23993598	39	18.5	38	73	11	410	23	30	19	26	1.98
23993354--23993489	38	3.6	38	84	3	157	24	33	19	23	1.97
23993076--23993645	271	2.1	271	81	4	639	24	30	19	25	1.98
23993312--23993661	78	4.5	77	79	6	312	23	30	20	26	1.98
23993195--23993661	154	3.0	152	80	6	413	23	29	19	26	1.98
23994124--23994175	6	9.0	6	78	16	56	42	0	3	53	1.19
23994126--23994175	17	2.9	17	90	0	82	40	0	4	56	1.18
23995605--23995995	163	2.4	163	91	3	614	26	13	12	48	1.77
23996116--23996256	29	4.8	29	80	6	140	34	24	4	36	1.75
23996117--23996258	59	2.4	59	87	4	189	35	24	3	36	1.73
23996082--23996256	88	2.0	89	85	1	235	34	24	4	37	1.76
23996145--23996284	29	4.8	28	76	6	109	35	23	4	36	1.75
23996125--23996284	59	2.7	59	82	3	182	35	23	4	36	1.75
23996430--23996471	14	2.9	15	82	10	61	19	7	4	69	1.31
23996430--23996487	30	2.0	28	83	6	71	24	8	3	63	1.38
23998350--23998382	16	2.1	16	88	5	50	63	0	27	9	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23998739--23998774	17	2.2	17	90	5	56	77	8	5	8	1.11
23999587--23999715	43	3.0	42	92	3	213	26	30	20	23	1.98
23999781--23999809	15	1.9	15	100	0	58	48	27	0	24	1.51
23999781--23999823	15	2.6	16	85	14	52	48	25	0	25	1.51
24000045--24000100	21	2.7	21	78	10	69	7	44	14	33	1.72
24004648--24004683	8	4.2	8	86	13	54	61	0	0	38	0.96
24004634--24004684	18	2.7	18	93	6	84	58	0	0	41	0.98
24004665--24004917	34	7.3	34	69	16	144	43	0	7	48	1.36
24004696--24004728	4	8.5	4	86	6	50	51	0	0	48	1.00
24004776--24004822	12	4.1	12	72	10	53	48	0	0	51	1.00
24004796--24004822	14	1.9	14	100	0	54	44	0	0	55	0.99
24004656--24004819	76	2.1	77	82	8	208	45	0	6	48	1.29
24004774--24004846	22	3.4	21	81	9	78	49	0	2	47	1.15
24004618--24004935	140	2.4	130	83	9	363	43	0	7	49	1.35
24004618--24004935	132	2.3	136	89	5	466	43	0	7	49	1.35
24008168--24008210	12	3.5	12	76	17	52	44	4	9	41	1.57
24008168--24008217	25	2.0	25	100	0	100	40	8	8	44	1.63
24009942--24010312	41	9.0	41	80	2	413	19	28	20	31	1.97
24009947--24010312	123	3.0	123	84	2	457	19	28	20	31	1.97
24010323--24010437	40	2.9	40	84	5	126	17	29	18	34	1.94
24015843--24015889	2	23.5	2	100	0	94	48	0	0	51	1.00
24020104--24020137	16	2.2	15	89	5	50	26	2	2	67	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24022172--24022217	21	2.1	23	84	8	60	45	0	28	26	1.54
24024448--24024489	21	2.0	22	85	4	59	64	4	19	11	1.44
24050052--24050113	14	4.2	14	74	15	54	64	0	9	25	1.24
24051346--24051390	21	2.1	21	91	0	72	24	2	8	64	1.34
24053136--24053170	7	4.7	7	86	13	52	0	2	11	85	0.69
24053135--24053201	10	6.7	10	79	5	55	7	2	5	83	0.89
24053127--24053170	23	1.9	23	86	9	63	0	6	9	84	0.79
24053146--24053194	15	3.2	15	85	8	55	10	2	6	81	0.94
24053167--24053200	15	2.3	15	94	0	59	14	2	0	82	0.79
24060473--24060514	19	2.2	20	83	12	52	73	9	0	16	1.08
24060552--24060586	8	4.4	8	85	0	52	82	0	2	14	0.77
24061821--24061865	21	2.1	21	87	0	63	22	2	8	66	1.30
24068014--24068995	501	2.0	504	90	2	1575	34	20	17	28	1.95
24081759--24081791	14	2.4	14	85	5	50	69	0	3	27	1.03
24083114--24083142	13	2.2	13	100	0	58	24	0	27	48	1.51
24097245--24097296	18	2.9	18	76	0	50	40	26	15	17	1.89
24099150--24099179	14	2.1	15	93	6	53	23	20	6	50	1.71
24100120--24100357	52	4.6	52	88	0	350	33	23	15	26	1.95
24108042--24108085	22	2.0	22	90	0	70	34	25	18	22	1.96
24115723--24115776	21	2.6	21	79	5	65	35	24	7	33	1.83
24116491--24116873	52	7.4	52	85	1	482	35	23	14	27	1.93
24116674--24116755	26	3.2	26	61	13	60	37	24	10	26	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24122591--24122615	13	1.9	13	100	0	50	68	8	24	0	1.16
24124779--24124833	24	2.2	24	90	3	83	27	14	7	50	1.69
24171333--24171381	18	2.7	18	77	0	53	38	32	12	16	1.86
24184060--24184752	137	5.0	136	87	4	928	45	6	8	40	1.59
24184060--24184752	275	2.5	274	87	3	957	45	6	8	40	1.59
24184060--24184752	138	5.0	137	87	3	957	45	6	8	40	1.59
24185531--24185571	21	2.0	21	90	4	66	24	14	14	46	1.82
24195564--24195602	16	2.3	16	86	8	51	51	10	17	20	1.74
24195707--24195739	15	2.1	16	88	5	50	6	33	6	54	1.50
24207708--24207743	18	2.0	18	88	0	54	69	2	27	0	1.02

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132