genome.fa.s12.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  116  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35250416--35250459	18	2.5	17	82	17	54	15	11	2	70	1.26
35250997--35251346	175	2.0	175	96	0	646	36	17	15	30	1.92
35252794--35252824	15	2.1	15	100	0	62	45	12	12	29	1.80
35258029--35258089	30	2.0	30	100	0	122	50	16	16	16	1.78
35259297--35259456	78	2.1	78	97	2	304	36	6	17	39	1.75
35263010--35263054	23	1.9	24	86	4	65	46	0	0	53	1.00
35264031--35264063	3	11.0	3	100	0	66	33	0	0	66	0.92
35267594--35267662	31	2.3	29	82	5	75	50	10	13	26	1.72
35268997--35269037	21	2.0	21	90	0	64	26	7	0	65	1.18
35269119--35269177	24	2.6	23	73	19	61	49	0	5	45	1.24
35286225--35286311	43	2.0	43	90	0	138	26	20	9	43	1.82
35290946--35291008	31	2.0	31	90	6	101	33	20	15	30	1.94
35301316--35301361	18	2.6	18	80	13	58	58	0	0	41	0.98
35303873--35303934	21	3.2	19	79	18	58	35	0	1	62	1.05
35303891--35303932	20	2.0	21	86	13	61	40	0	0	59	0.97
35304908--35304957	24	2.1	24	85	7	66	48	0	0	52	1.00
35305495--35305533	18	2.1	18	90	9	60	35	2	2	58	1.25
35305851--35305898	11	4.4	11	75	0	51	10	2	20	66	1.32
35305859--35305903	22	2.0	22	95	0	81	11	4	20	64	1.42
35306021--35306058	17	2.2	18	85	4	51	44	0	5	50	1.24
35306963--35307054	44	2.1	45	89	2	141	41	9	2	46	1.49
35312319--35312344	2	13.0	2	100	0	52	50	0	50	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35315862--35315922	29	2.1	29	84	0	77	42	8	1	47	1.43
35331916--35332009	9	10.4	9	71	12	59	68	1	3	27	1.12
35331916--35332009	17	5.2	17	65	13	55	68	1	3	27	1.12
35332294--35332338	21	2.1	21	83	0	54	44	2	2	51	1.26
35332641--35332675	12	2.9	12	82	0	52	14	31	14	40	1.86
35335808--35335839	14	2.2	15	94	5	57	68	6	6	18	1.32
35337662--35337730	19	3.4	19	76	8	57	62	4	8	24	1.43
35338203--35338263	10	6.3	9	75	15	52	22	1	4	70	1.15
35338284--35338319	18	1.9	19	88	5	56	44	0	0	55	0.99
35339477--35341006	509	3.0	509	100	0	3060	32	13	21	32	1.92
35341716--35341785	19	3.6	19	83	11	81	55	5	0	38	1.24
35341748--35341791	18	2.5	17	85	7	61	52	6	0	40	1.28
35341797--35341829	11	3.2	11	91	8	52	81	0	0	18	0.68
35342571--35343076	257	2.0	257	88	2	746	37	19	14	27	1.91
35346110--35346205	12	7.8	12	70	15	54	67	17	6	8	1.37
35346155--35346205	24	2.1	24	88	0	75	70	13	7	7	1.32
35347674--35348052	183	2.1	183	92	2	627	30	21	17	30	1.96
35361931--35361956	2	13.0	2	100	0	52	50	0	0	50	1.00
35367452--35367508	12	4.8	12	84	4	80	17	17	15	49	1.81
35367606--35367682	23	3.3	23	78	5	75	32	10	15	41	1.81
35369117--35369164	24	2.0	24	100	0	96	25	37	25	12	1.91
35370054--35370109	24	2.3	23	82	14	69	41	16	0	42	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35380275--35380326	23	2.2	24	82	3	61	15	17	23	44	1.86
35384317--35384350	15	2.3	15	89	0	50	5	2	11	79	1.02
35384523--35384577	10	5.4	10	80	12	51	58	1	1	38	1.20
35385208--35385265	10	6.3	9	75	18	50	31	0	3	65	1.09
35385190--35385361	28	6.1	27	69	20	79	31	3	3	61	1.29
35385215--35385265	17	2.8	18	77	22	54	31	0	3	64	1.11
35385190--35385327	9	15.0	9	68	15	77	31	3	3	61	1.30
35385207--35385370	29	5.8	28	70	12	88	32	3	3	61	1.26
35397153--35397195	18	2.4	18	88	7	61	53	0	0	46	1.00
35411306--35411361	29	1.9	30	85	7	80	32	12	10	44	1.77
35411495--35411566	31	2.4	30	81	4	81	45	12	6	34	1.69
35415129--35415166	16	2.4	16	82	8	51	52	7	5	34	1.53
35415524--35415755	90	2.6	90	79	10	249	34	8	12	45	1.71
35415518--35415778	91	2.9	87	78	11	267	33	8	11	46	1.70
35421712--35421943	94	2.5	95	85	6	303	47	6	5	40	1.54
35422160--35422267	50	2.3	48	84	9	132	19	6	12	61	1.53
35422171--35422276	50	2.1	50	85	3	142	20	7	12	59	1.57
35422460--35422512	23	2.2	24	86	10	81	41	0	3	54	1.18
35422454--35422512	24	2.5	23	86	8	84	44	0	3	52	1.17
35422526--35422578	28	1.9	28	92	3	90	32	1	13	52	1.51
35426185--35426502	161	2.0	161	92	0	537	26	27	10	36	1.89
35427853--35427886	18	1.9	17	94	5	59	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35427854--35427894	18	2.3	18	87	8	57	48	0	0	51	1.00
35428452--35428486	16	2.2	16	94	0	61	65	5	2	25	1.28
35433085--35433220	51	2.7	52	93	2	188	46	11	4	37	1.61
35433106--35433220	51	2.3	50	100	0	194	45	13	3	37	1.61
35436929--35436973	18	2.6	16	80	16	54	51	0	4	44	1.21
35436999--35437032	18	1.9	17	88	5	50	35	5	14	44	1.70
35437268--35437307	21	1.9	21	94	0	71	37	10	2	50	1.50
35442528--35442581	22	2.5	22	84	6	74	33	25	18	22	1.97
35444717--35444766	2	25.0	2	100	0	100	50	0	0	50	1.00
35451243--35451299	28	2.0	28	83	6	71	66	5	0	28	1.13
35451899--35451932	16	2.1	16	88	0	50	76	14	0	8	1.01
35457041--35457097	17	3.4	17	70	0	51	21	28	1	49	1.59
35457041--35457134	34	2.8	34	88	0	125	20	28	2	48	1.61
35462524--35462614	34	2.7	34	82	0	110	18	34	3	43	1.66
35462557--35462614	17	3.4	17	75	0	53	18	36	3	41	1.68
35464016--35464067	6	8.7	6	97	0	86	50	38	0	11	1.39
35467374--35467539	23	7.4	23	74	14	150	42	22	24	11	1.86
35467380--35467454	39	1.9	39	91	0	123	44	21	22	12	1.85
35467419--35467539	48	2.6	46	87	7	172	39	23	25	11	1.88
35473517--35473551	12	3.0	11	91	8	52	34	0	2	62	1.10
35481502--35481853	176	2.0	176	95	0	632	33	17	17	32	1.93
35489916--35489977	28	2.2	28	82	5	72	25	14	6	53	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35500825--35500864	16	2.6	16	84	4	55	40	0	10	50	1.36
35501757--35501787	14	2.2	14	94	0	53	61	3	0	35	1.12
35502677--35502823	73	2.0	73	93	0	249	27	21	14	36	1.92
35507533--35507582	27	1.9	26	92	8	84	62	0	0	38	0.96
35508273--35508447	95	1.9	94	81	9	214	37	2	6	53	1.40
35513353--35513395	20	2.2	20	91	0	68	39	27	13	18	1.89
35513901--35513925	3	8.3	3	100	0	50	68	0	0	32	0.90
35514086--35514113	13	2.2	13	100	0	56	53	0	14	32	1.41
35519777--35519836	29	2.1	29	93	0	102	31	8	23	36	1.84
35523827--35523883	28	2.0	29	89	3	89	36	0	7	56	1.27
35529127--35529169	2	21.5	2	100	0	86	0	48	0	51	1.00
35529169--35529231	2	31.5	2	100	0	126	49	0	0	50	1.00
35531568--35531752	61	3.0	61	88	2	255	29	22	13	35	1.92
35532032--35532320	63	4.7	62	79	6	307	39	15	16	29	1.89
35532030--35532320	124	2.3	124	81	2	352	39	15	16	28	1.89
35532937--35532973	18	2.1	18	89	0	56	27	5	13	54	1.61
35533212--35533403	100	1.9	98	88	6	289	29	18	13	39	1.88
35533307--35533476	61	2.8	61	81	3	218	27	19	15	37	1.92
35533147--35533465	161	2.0	160	84	4	419	29	18	13	38	1.89
35533777--35533986	60	3.5	59	80	7	208	38	16	16	28	1.90
35533774--35533989	61	3.6	61	81	10	237	37	16	16	29	1.91
35548469--35548517	21	2.3	20	80	16	55	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35548711--35548745	3	11.7	3	100	0	70	68	0	0	31	0.90
35558987--35559218	51	4.7	50	69	17	160	41	5	8	43	1.59
35558858--35559365	146	3.4	146	92	3	759	39	4	9	45	1.57
35563400--35563445	24	1.9	24	86	0	65	30	2	23	43	1.66
35564908--35564965	29	2.0	29	86	0	80	29	13	8	48	1.73
35566733--35566783	23	2.2	24	82	10	70	13	3	13	68	1.34
35569359--35569412	10	5.8	10	80	12	53	68	0	3	27	1.06
35569356--35569412	18	3.2	18	80	9	80	66	0	3	29	1.08
35569585--35569639	19	2.9	18	77	15	58	34	3	1	60	1.25
35569616--35569682	22	3.1	22	82	6	66	32	2	2	61	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132