genome.fa.s12.2.7.7.80.10.50.1000.99.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  99  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30345394--30345436	15	2.9	15	96	0	77	25	39	13	20	1.90
30364582--30364653	25	2.9	24	80	10	74	37	4	1	56	1.27
30365516--30365594	18	4.4	18	81	0	86	51	8	25	13	1.70
30365515--30365594	36	2.2	36	88	0	124	51	8	26	13	1.70
30376398--30376432	5	6.8	5	93	6	61	80	0	20	0	0.72
30384336--30384387	21	2.5	21	78	9	63	65	7	3	23	1.35
30384910--30384971	20	2.9	22	79	11	58	69	19	3	8	1.28
30384910--30384951	20	2.0	21	86	4	59	71	21	0	7	1.09
30384908--30385042	44	2.9	44	72	10	110	68	20	2	8	1.28
30384980--30385014	12	2.9	12	86	0	52	71	17	5	5	1.25
30384977--30385071	21	4.8	19	75	15	59	73	17	3	5	1.15
30385010--30385070	17	3.3	18	82	13	79	75	18	1	4	1.06
30385033--30385094	21	2.8	22	78	11	74	70	17	4	6	1.26
30387046--30387142	15	6.5	15	89	2	124	29	22	20	26	1.99
30387058--30387142	15	5.7	15	91	0	125	30	22	20	27	1.98
30390186--30390333	15	9.9	15	80	2	172	27	21	21	29	1.99
30392367--30392448	30	2.9	29	84	10	100	21	34	15	28	1.95
30400421--30400460	11	3.7	11	90	3	64	0	17	0	82	0.67
30400421--30400463	20	2.2	20	87	8	61	0	16	0	83	0.64
30400421--30400463	10	4.3	9	83	16	50	0	16	0	83	0.64
30404507--30404537	3	10.3	3	100	0	62	32	0	0	67	0.91
30410208--30410242	17	2.1	17	89	5	54	31	8	5	54	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30412440--30412479	16	2.4	17	83	4	55	47	17	15	20	1.83
30412599--30412627	14	2.0	15	93	6	51	0	41	0	58	0.98
30428949--30429048	18	5.6	18	85	0	128	48	10	28	14	1.75
30432550--30432584	17	2.1	17	89	5	54	31	8	5	54	1.54
30441385--30441443	27	2.2	27	81	6	75	64	1	33	0	1.04
30446693--30446717	2	12.5	2	100	0	50	48	0	0	52	1.00
30450273--30450520	123	2.0	122	96	0	460	43	14	8	34	1.74
30450544--30450591	21	2.3	21	79	10	55	66	8	4	20	1.35
30451202--30451265	19	3.3	19	82	12	85	75	17	1	6	1.09
30451194--30451288	44	2.4	38	86	12	120	70	17	3	8	1.26
30453234--30453315	15	5.5	15	88	0	110	30	21	19	28	1.98
30456275--30456356	15	5.5	15	88	0	110	30	21	19	28	1.98
30459274--30459456	15	12.2	15	81	2	206	28	21	20	30	1.98
30459786--30459823	6	6.5	6	81	6	51	57	0	0	42	0.98
30459802--30459830	12	2.4	12	100	0	58	65	0	0	34	0.93
30465800--30465843	10	4.4	10	84	15	56	0	18	0	81	0.68
30469899--30469926	3	9.3	3	100	0	56	32	0	0	67	0.91
30470514--30470548	3	11.7	3	93	0	61	34	0	0	65	0.93
30471455--30471489	17	2.1	17	89	5	54	31	8	5	54	1.54
30473681--30473720	16	2.4	17	87	4	55	50	15	15	20	1.79
30479233--30479279	23	2.0	23	95	0	85	27	23	17	31	1.96
30490918--30490961	17	2.6	17	85	0	61	36	2	2	59	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30491840--30491897	15	3.7	15	76	13	53	51	8	24	15	1.71
30491854--30491912	18	3.3	18	80	0	73	47	6	30	15	1.71
30495442--30495476	17	2.1	17	89	5	54	31	8	5	54	1.54
30505362--30505420	27	2.2	27	81	6	75	64	0	33	1	1.04
30506474--30506518	5	8.8	5	95	4	81	80	0	20	0	0.72
30510718--30510742	2	12.5	2	100	0	50	48	0	0	52	1.00
30513007--30513040	7	4.9	7	88	0	50	44	32	0	23	1.54
30515027--30515143	21	5.5	21	72	12	71	68	20	3	7	1.29
30515027--30515151	44	3.0	41	77	10	110	68	20	3	7	1.27
30515094--30515152	9	6.2	9	75	9	55	74	18	3	3	1.10
30515053--30515139	32	2.7	31	75	19	88	67	20	4	6	1.32
30515040--30515154	21	5.5	21	72	12	76	69	20	3	6	1.26
30516328--30516355	2	14.0	2	100	0	56	50	0	0	50	1.00
30517044--30517188	30	4.8	30	82	3	148	31	20	20	28	1.97
30517044--30517189	15	9.7	15	82	4	80	30	20	20	28	1.98
30517041--30517188	45	3.3	45	81	2	163	30	20	20	28	1.98
30520087--30520235	15	9.9	15	80	0	145	28	22	19	29	1.98
30520090--30520234	30	4.8	30	86	0	173	29	21	19	29	1.97
30520564--30520588	11	2.3	11	100	0	50	48	0	0	52	1.00
30526517--30526557	11	3.7	11	84	9	57	0	17	0	82	0.66
30526528--30526555	12	2.3	12	100	0	56	0	14	0	85	0.59
30526518--30526560	9	4.4	10	80	13	54	0	16	0	83	0.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30530648--30530675	3	9.3	3	100	0	56	32	0	0	67	0.91
30532191--30532225	17	2.1	17	89	5	54	31	8	5	54	1.54
30534425--30534464	16	2.4	17	87	4	55	50	15	15	20	1.79
30534585--30534613	14	2.0	15	93	6	51	0	41	0	58	0.98
30551177--30551229	22	2.4	22	78	12	54	37	0	9	52	1.34
30551791--30551831	16	2.5	17	80	7	50	31	4	0	63	1.15
30551791--30551849	25	2.4	24	86	8	82	33	3	1	61	1.23
30552719--30552788	21	3.5	21	73	11	74	55	7	24	12	1.62
30552742--30552803	18	3.4	18	81	0	79	48	6	30	14	1.69
30556345--30556379	17	2.1	17	89	5	54	31	8	5	54	1.54
30559262--30559535	135	2.0	137	93	4	475	25	17	19	37	1.93
30566477--30566535	27	2.2	27	81	6	75	64	1	33	0	1.04
30571712--30571746	2	17.5	2	100	0	70	48	0	0	51	1.00
30575444--30575495	21	2.5	21	78	9	63	65	7	3	23	1.35
30576018--30576131	21	5.2	21	71	18	72	67	21	3	7	1.31
30576032--30576122	12	7.9	12	72	11	57	68	19	4	7	1.32
30576016--30576131	44	2.6	43	77	5	115	67	20	3	8	1.33
30576085--30576181	21	4.8	19	77	12	61	73	17	3	6	1.17
30576118--30576216	19	4.9	19	76	15	92	71	17	4	7	1.24
30576085--30576213	40	3.1	42	75	15	124	71	17	4	6	1.26
30578121--30578220	15	6.7	15	89	0	146	31	22	19	28	1.97
30578090--30578220	45	2.9	45	84	0	163	31	20	21	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30578077--30578221	15	9.7	15	83	0	128	31	21	20	26	1.98
30581265--30581418	15	10.3	15	76	5	123	28	19	22	29	1.98
30581270--30581418	45	3.3	44	80	5	165	28	19	21	30	1.98
30581273--30581417	30	4.8	30	83	1	175	29	18	21	30	1.97
30581748--30581783	11	3.2	11	92	4	54	52	0	0	47	1.00
30581752--30581791	12	3.4	12	89	3	55	57	0	0	42	0.98
30583462--30583520	30	2.0	29	86	3	82	23	30	16	28	1.97
30591498--30591590	9	10.2	9	71	13	57	2	15	4	78	1.00
30595625--30595655	3	10.3	3	100	0	62	32	0	0	67	0.91
30596239--30596282	3	14.7	3	100	0	88	31	0	0	68	0.90
30597856--30597968	58	1.9	58	80	7	131	38	13	15	33	1.86
30599151--30599178	11	2.5	11	100	0	56	64	0	28	7	1.20
30600093--30600130	15	2.4	16	86	4	51	18	5	13	63	1.48
30600101--30600131	16	2.0	16	93	6	55	19	0	16	64	1.29
30603386--30603437	18	3.0	18	83	10	65	48	0	0	51	1.00
30605946--30606005	31	1.9	31	89	0	93	36	11	16	35	1.85
30607394--30607437	16	2.8	16	80	16	56	40	2	0	56	1.11
30616423--30616470	25	2.0	24	84	15	64	60	2	0	37	1.09
30616431--30616482	25	2.1	25	85	0	68	65	3	0	30	1.10
30616678--30616736	31	1.9	31	92	0	100	42	5	11	40	1.64
30628165--30628195	13	2.4	13	100	0	62	25	32	0	41	1.56
30630080--30630148	31	2.2	31	82	5	77	52	14	4	28	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30633899--30633947	22	2.3	21	86	6	71	36	2	24	36	1.67
30633906--30633949	22	2.0	22	95	0	79	36	2	27	34	1.70
30634645--30634694	2	25.0	2	80	8	57	42	2	0	56	1.11
30635554--30635970	60	7.0	59	77	7	335	34	25	2	37	1.68
30635554--30635948	30	13.3	29	78	9	275	34	26	2	36	1.68
30635743--30635823	31	2.7	31	84	5	103	33	25	6	34	1.81
30640750--30640835	7	11.9	7	78	13	77	83	0	4	11	0.78
30640750--30640845	33	3.0	31	82	14	115	83	0	6	10	0.81
30640757--30640826	12	5.7	12	79	15	72	82	0	5	11	0.82
30640750--30640828	17	4.8	16	80	11	97	83	0	5	11	0.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132