genome.fa.s12.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  115  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34955441--34955749	59	5.2	59	74	9	209	32	23	6	36	1.81
34956368--34956397	14	2.1	14	100	0	60	46	16	13	23	1.82
34964706--34964734	5	5.8	5	100	0	58	0	41	0	58	0.98
34976012--34976075	28	2.3	28	89	5	94	54	0	4	40	1.21
34976374--34976411	15	2.4	17	83	16	55	68	7	0	23	1.16
34976376--34976410	16	2.3	16	90	9	56	68	8	0	22	1.16
34979123--34979194	27	2.7	27	82	6	101	48	0	0	51	1.00
34979112--34979174	32	1.9	33	93	3	110	49	0	0	50	1.00
34994064--34994108	16	2.8	16	93	0	72	42	0	31	26	1.56
34994063--34994117	16	3.4	16	80	9	58	40	3	29	27	1.73
34994287--34994441	58	2.6	59	83	9	183	50	1	1	46	1.17
34994406--34994456	24	2.1	24	82	10	59	56	0	5	37	1.23
35000995--35001022	14	2.0	14	100	0	56	57	14	7	21	1.61
35002548--35002580	17	1.9	17	88	11	50	21	0	33	45	1.52
35007790--35007918	56	2.3	56	80	7	138	35	13	16	34	1.88
35008036--35008096	31	2.0	29	84	12	79	37	3	0	59	1.14
35008105--35008150	19	2.5	18	83	16	51	41	2	0	56	1.11
35008131--35008174	23	1.9	23	86	9	63	45	0	2	52	1.13
35008201--35008245	22	2.0	22	87	8	65	51	2	0	46	1.13
35011200--35011227	5	5.6	5	100	0	56	57	0	0	42	0.99
35012175--35012209	3	11.7	3	100	0	70	65	0	0	34	0.93
35013262--35013305	22	2.0	23	90	4	72	38	11	6	43	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35013489--35013657	44	3.8	45	84	3	198	41	10	18	29	1.83
35016672--35016858	30	6.2	30	88	0	239	36	4	22	36	1.74
35016776--35016824	15	3.3	15	70	30	50	40	2	20	36	1.64
35022428--35022664	30	7.9	30	87	0	294	36	3	22	37	1.71
35023740--35023802	3	21.3	3	77	6	58	34	0	3	61	1.12
35023740--35023803	22	3.0	22	81	2	76	35	0	3	60	1.12
35024320--35024399	40	2.0	41	85	2	108	13	13	28	43	1.83
35024322--35024408	14	6.3	14	86	4	97	13	12	29	43	1.81
35024450--35024487	17	2.4	15	91	8	58	50	10	0	39	1.37
35024459--35024523	18	3.6	17	79	8	60	50	6	4	38	1.48
35030310--35030342	15	2.2	15	94	0	57	24	0	27	48	1.51
35030405--35030571	43	3.9	43	85	0	235	30	17	28	23	1.97
35030406--35030567	86	1.9	86	92	0	270	29	17	29	24	1.97
35030588--35030631	22	2.0	22	86	4	61	43	9	0	47	1.35
35030820--35030948	44	2.9	44	90	0	195	41	11	20	25	1.86
35031002--35031124	44	2.8	45	78	5	133	42	8	20	28	1.82
35030819--35032072	184	6.9	184	95	1	1931	39	10	19	30	1.85
35031549--35032044	44	10.8	44	64	17	145	39	9	20	30	1.85
35031936--35032044	47	2.4	48	81	7	127	42	10	22	25	1.84
35032592--35032616	1	25.0	1	100	0	50	0	0	0	100	0.00
35033258--35033295	17	2.2	17	90	9	60	57	2	0	39	1.12
35035861--35035910	17	2.9	19	82	11	56	32	0	4	64	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35036873--35036974	52	2.0	52	98	0	195	47	1	37	13	1.55
35037069--35037111	13	3.2	13	75	12	50	58	11	2	27	1.46
35038003--35038031	2	14.5	2	100	0	58	48	0	0	51	1.00
35040842--35041066	113	2.0	113	92	0	378	31	15	8	44	1.75
35059631--35059705	32	2.5	29	84	14	107	54	0	0	45	0.99
35059651--35059707	16	3.6	16	73	7	53	56	0	0	43	0.99
35059788--35059833	20	2.3	20	96	0	83	30	4	13	52	1.59
35060596--35060707	42	2.7	42	82	6	138	42	20	15	21	1.88
35061043--35061129	22	3.9	23	72	11	83	48	0	0	51	1.00
35061039--35061105	31	2.2	32	91	5	111	43	0	0	56	0.99
35061048--35061108	15	4.0	15	81	10	79	45	0	0	54	1.00
35061039--35061126	44	1.9	47	90	6	146	45	0	0	54	0.99
35063940--35063985	24	1.9	24	100	0	92	26	26	21	26	2.00
35068525--35068566	17	2.6	17	81	7	52	50	4	2	42	1.36
35070514--35070567	24	2.3	24	83	3	65	57	3	7	31	1.44
35070563--35070605	10	4.3	10	80	8	52	67	0	2	30	1.03
35070563--35070605	21	2.1	20	91	4	68	67	0	2	30	1.03
35070667--35070703	20	2.0	20	89	10	60	67	2	0	29	1.04
35070662--35070728	30	2.3	30	80	12	84	59	2	1	35	1.22
35070954--35070987	9	3.8	9	84	0	50	29	2	0	67	1.05
35071105--35071145	21	1.9	22	85	14	59	36	2	2	58	1.24
35071159--35071215	29	2.0	29	82	0	69	38	1	1	57	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35072430--35072458	3	9.7	3	100	0	58	65	34	0	0	0.93
35075754--35075892	59	2.4	59	80	6	147	21	12	10	56	1.65
35076128--35076212	30	2.8	30	82	5	91	49	5	14	30	1.66
35083358--35083464	54	2.0	54	98	0	205	28	25	12	33	1.92
35083843--35083907	23	2.7	24	81	9	69	72	3	4	20	1.16
35097955--35098029	19	3.4	20	66	33	55	65	4	1	29	1.19
35097968--35098096	28	4.5	28	71	22	90	62	3	3	31	1.29
35097951--35098100	68	2.2	67	82	11	171	62	4	2	30	1.27
35097935--35098096	58	2.8	56	76	9	166	62	4	2	30	1.27
35099005--35099098	9	10.0	9	71	12	64	35	2	2	60	1.20
35115942--35115981	20	2.0	20	85	9	55	42	10	0	47	1.37
35126376--35126411	11	3.2	11	92	4	54	69	0	5	25	1.10
35126348--35126428	20	4.1	20	65	15	51	60	1	2	35	1.18
35128445--35128484	11	3.2	13	80	20	50	42	0	0	57	0.98
35129681--35129718	19	2.0	19	94	0	67	28	15	18	36	1.92
35132747--35132791	20	2.2	21	88	4	65	60	20	13	6	1.55
35136503--35136690	23	8.1	23	79	9	136	11	25	23	40	1.87
35136504--35136580	25	3.2	25	76	14	79	10	25	22	41	1.85
35146469--35146556	31	2.9	28	73	20	70	34	10	12	43	1.76
35153750--35153788	20	2.0	20	94	0	69	38	0	5	56	1.22
35155449--35155480	16	2.0	16	93	0	55	71	0	6	21	1.07
35164958--35164998	12	3.2	13	82	10	57	82	2	2	12	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35166752--35166999	59	4.2	60	83	4	308	28	18	18	34	1.95
35167674--35167716	16	2.6	17	82	7	54	44	0	4	51	1.22
35183333--35183404	28	2.6	28	82	4	83	56	2	1	38	1.22
35183830--35183951	63	1.9	63	86	3	174	45	8	13	33	1.73
35183829--35183994	63	2.6	63	80	7	169	43	11	11	33	1.77
35184339--35184382	24	1.9	23	86	9	63	45	11	0	43	1.40
35189666--35189713	19	2.5	20	83	10	64	56	0	4	39	1.19
35190403--35190466	24	2.7	24	87	0	101	54	9	12	23	1.66
35192394--35192456	24	2.6	24	89	0	99	50	11	14	23	1.74
35199432--35199490	24	2.5	24	82	0	73	50	5	13	30	1.63
35200863--35200933	24	2.8	27	68	12	69	43	9	2	43	1.52
35201421--35201448	12	2.3	12	100	0	56	32	0	7	60	1.24
35203363--35203437	30	2.5	30	91	0	123	33	25	2	38	1.70
35212077--35212258	91	2.0	91	100	0	364	35	15	5	43	1.70
35215214--35215555	86	3.9	86	81	6	332	39	13	9	38	1.77
35215682--35215722	19	2.2	18	86	4	55	21	2	2	73	1.07
35215689--35215730	19	2.3	19	88	8	61	21	0	2	76	0.90
35215867--35216077	92	2.3	90	80	9	225	38	8	13	38	1.76
35226624--35226669	22	2.0	23	83	4	58	26	6	6	60	1.46
35228424--35228492	28	2.5	28	79	9	79	50	1	0	47	1.09
35244671--35244731	22	2.7	22	75	10	52	18	9	0	72	1.11
35246633--35247080	50	9.1	49	75	8	311	34	15	31	19	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35246723--35247052	99	3.3	99	79	2	315	34	13	31	20	1.92
35246680--35247086	149	2.7	149	78	4	385	34	14	30	20	1.92
35247320--35247487	78	2.2	78	86	1	230	35	23	15	25	1.94
35247320--35248000	38	17.6	38	75	9	396	32	24	16	26	1.96
35247318--35247853	115	4.6	116	78	7	414	33	23	17	26	1.96
35247399--35247972	151	3.7	152	79	6	532	31	24	16	27	1.96
35247343--35248254	40	23.5	40	76	7	695	31	25	16	26	1.97
35247343--35248254	77	11.7	79	82	6	709	31	25	16	26	1.97
35250295--35250334	21	1.9	21	84	0	53	17	7	0	75	1.03
35250290--35250335	11	3.8	12	76	23	51	15	8	0	76	1.02

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132