Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  132  of  132  ( 15769 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41137285--41137390
23
4.6
23
89
1
149
25
13
20
40
1.89
41139253--41139290
20
1.9
20
84
10
51
18
5
0
76
0.97
41141547--41141617
28
2.4
29
80
15
76
16
15
1
66
1.33
41141576--41141621
22
2.1
22
92
4
76
17
10
0
71
1.13
41141576--41141637
21
2.9
21
86
9
81
17
8
1
72
1.17
41145205--41145233
10
2.7
11
89
10
51
48
0
0
51
1.00
41145393--41145428
10
3.5
10
85
7
54
41
8
2
47
1.48
41145579--41145617
20
1.9
21
89
5
62
28
7
15
48
1.72
41149686--41149879
93
2.1
94
95
1
354
31
24
25
18
1.97
41152127--41152167
22
1.9
22
85
14
59
17
19
0
63
1.31
41152156--41152205
25
2.0
25
84
3
66
6
18
6
70
1.29
41154128--41154187
24
2.4
24
81
10
68
33
0
6
60
1.23
41156803--41156848
24
1.9
24
83
16
60
50
2
45
2
1.26
41164933--41164979
21
2.2
21
84
0
58
0
23
6
70
1.10
41165867--41165910
18
2.5
17
82
10
52
65
0
2
31
1.05
41166694--41166733
16
2.6
16
88
4
55
75
5
2
17
1.10
41168066--41168109
2
22.0
2
95
0
79
52
0
47
0
1.00
41172195--41172313
60
2.0
61
86
1
168
40
5
21
33
1.75
41174520--41174546
12
2.2
12
100
0
54
51
14
25
7
1.68
41184672--41184957
73
3.9
73
92
1
423
32
21
21
24
1.98
41185151--41185211
29
2.1
30
84
9
81
49
3
3
44
1.35
41185556--41185600
22
2.0
22
83
8
56
51
8
8
31
1.64
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41187075--41187136
26
2.2
26
83
11
70
33
4
6
54
1.47
41198028--41198094
30
2.3
28
80
10
80
44
2
17
34
1.64
41197915--41198124
89
2.4
89
81
5
246
40
2
23
33
1.70
41197915--41198162
29
8.4
30
74
9
152
39
4
24
31
1.74
41197964--41198150
89
2.1
88
79
8
209
40
4
22
31
1.75
41199971--41200157
39
4.8
38
73
4
151
24
19
31
25
1.98
41199956--41200344
78
5.0
78
78
9
364
23
18
32
24
1.97
41199994--41200214
39
5.7
39
68
13
141
23
19
31
25
1.98
41200202--41200252
19
2.7
19
96
0
93
29
13
41
15
1.86
41200998--41201222
39
5.8
39
71
6
159
23
19
32
25
1.98
41201015--41201349
78
4.3
78
79
5
363
23
17
33
24
1.96
41201207--41201257
19
2.7
19
96
0
93
29
13
41
15
1.86
41202546--41202616
6
11.7
6
71
14
56
1
15
5
77
1.02
41202546--41202619
26
2.7
26
78
14
78
1
16
5
77
1.03
41206868--41206906
20
2.0
20
84
0
51
71
7
0
20
1.10
41208358--41208394
18
2.1
18
89
0
56
24
27
0
48
1.51
41210769--41210900
50
2.6
52
86
4
180
34
14
12
39
1.83
41210767--41210939
50
3.4
50
79
13
158
34
13
12
39
1.82
41210771--41210958
101
1.9
99
79
10
211
34
13
11
40
1.81
41212428--41212473
12
3.9
12
80
5
58
39
21
13
26
1.90
41212431--41212494
23
2.7
23
90
2
92
42
17
14
26
1.87
41215609--41215644
16
2.1
17
90
10
56
8
0
16
75
1.04
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41233332--41233428
48
2.0
48
97
0
185
35
25
4
35
1.75
41237110--41237174
29
2.2
29
80
0
85
41
0
7
50
1.31
41237103--41237174
22
3.3
22
76
3
74
41
0
8
50
1.33
41237110--41237173
7
8.9
7
74
6
56
40
0
7
51
1.31
41237468--41237518
21
2.4
21
93
3
84
56
13
1
27
1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132

The End!