genome.fa.s12.2.7.7.80.10.50.1000.59.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  59  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16393307--16393335	10	2.9	10	100	0	58	20	0	6	72	1.07
16396060--16396372	41	7.6	41	86	2	371	30	19	29	20	1.97
16396101--16396375	122	2.2	123	87	2	365	29	20	30	20	1.97
16397670--16397733	17	3.8	17	82	0	83	39	1	4	54	1.31
16397673--16397746	11	6.6	11	75	18	64	37	1	4	56	1.27
16397672--16397746	23	3.4	22	78	12	82	38	1	4	56	1.27
16399592--16399757	57	2.9	58	80	13	182	38	25	1	34	1.64
16399783--16399933	60	2.6	58	81	10	164	33	25	7	33	1.85
16399599--16399956	29	12.3	29	76	14	237	35	24	6	33	1.81
16399625--16399994	147	2.5	145	82	5	392	33	25	7	33	1.84
16407706--16407737	13	2.5	13	100	0	64	18	6	9	65	1.42
16412359--16412636	123	2.3	123	83	0	358	35	19	24	20	1.96
16412149--16412833	332	2.1	332	94	0	1181	35	19	23	22	1.96
16412481--16413557	209	5.2	209	88	2	1547	35	18	23	22	1.95
16413840--16413898	6	10.2	6	72	20	54	45	0	3	50	1.18
16413842--16413905	11	5.8	10	80	20	74	43	0	3	53	1.16
16413843--16413905	23	2.8	23	97	2	119	42	0	3	53	1.16
16415755--16415954	29	6.9	29	83	9	214	38	26	1	33	1.66
16415715--16415954	59	4.1	58	79	8	204	40	24	2	33	1.67
16415923--16416234	29	10.7	29	69	16	164	31	27	8	31	1.88
16415920--16416256	147	2.3	145	82	4	367	31	27	9	31	1.88
16420787--16421072	43	6.7	43	84	1	333	24	17	27	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16420796--16421072	85	3.2	85	86	1	367	24	17	27	30	1.97
16420787--16421072	128	2.2	128	85	2	369	24	17	27	30	1.97
16423703--16423865	80	2.0	80	100	0	326	23	14	17	44	1.85
16423908--16423981	33	2.2	33	82	0	94	31	2	13	52	1.54
16446019--16446082	23	2.7	23	80	2	74	31	9	17	42	1.81
16454851--16454890	20	2.0	20	100	0	80	30	10	25	35	1.88
16474132--16474156	12	2.1	12	100	0	50	0	16	0	84	0.63
16478531--16478561	12	2.5	13	89	10	55	70	0	0	29	0.87
16486346--16486387	8	5.1	8	88	2	57	80	2	0	16	0.81
16486463--16486506	14	3.2	13	84	15	54	77	2	2	18	0.98
16488199--16488684	201	2.4	199	81	4	539	27	18	17	37	1.93
16488229--16488656	100	4.3	101	81	5	397	27	17	17	37	1.92
16488419--16488578	50	3.2	50	70	11	137	26	19	16	37	1.92
16488448--16488605	51	3.1	51	69	12	144	28	20	15	36	1.93
16491285--16491341	28	2.0	28	100	0	114	47	21	3	28	1.67
16491806--16491830	12	2.1	12	100	0	50	40	16	8	36	1.77
16496421--16496687	42	6.4	42	90	1	374	36	23	19	20	1.95
16496414--16496687	126	2.2	126	91	1	433	36	23	20	20	1.95
16506298--16506350	17	3.0	17	79	15	54	20	9	3	66	1.37
16513846--16513907	24	2.6	24	97	0	115	67	0	29	3	1.06
16513861--16513902	12	3.4	13	74	12	52	64	0	30	4	1.14
16518338--16518380	21	2.0	22	81	9	52	62	16	4	16	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16529346--16529447	20	5.0	20	75	10	82	46	11	5	36	1.65
16534850--16534904	20	2.8	20	85	0	74	43	12	7	36	1.71
16536941--16537034	20	4.7	20	75	7	75	50	10	5	34	1.60
16541222--16541280	19	3.2	19	75	20	54	64	0	3	32	1.10
16541238--16541279	19	2.3	19	88	8	61	64	0	4	30	1.14
16547358--16547410	21	2.5	21	90	0	79	11	1	35	50	1.49
16552162--16552372	36	5.9	36	90	0	341	37	26	14	21	1.92
16554907--16554936	3	10.0	3	100	0	60	66	0	0	33	0.92
16561241--16561282	17	2.5	17	84	7	50	66	11	4	16	1.40
16577047--16577091	22	2.0	22	95	0	81	64	24	4	6	1.37
16580481--16580514	13	2.6	13	90	0	50	64	5	5	23	1.38
16581575--16581661	31	2.8	31	84	6	122	39	24	10	26	1.87
16581647--16581684	20	1.9	20	100	0	76	31	31	5	31	1.80
16582559--16582617	29	2.0	29	86	0	82	52	10	6	30	1.61
16597064--16597120	28	2.0	28	96	0	105	40	19	10	29	1.85
16601461--16601498	19	2.1	19	95	5	69	63	10	10	15	1.52
16615045--16615083	7	5.9	7	88	11	55	76	0	0	23	0.78
16631778--16631848	37	2.0	37	86	5	101	25	22	15	36	1.93
16634772--16634834	33	1.9	33	96	0	117	36	17	6	39	1.75
16635125--16635201	21	3.7	21	75	0	73	33	27	10	28	1.90
16637020--16637061	21	1.9	23	85	9	61	33	23	0	42	1.55
16641743--16641785	18	2.4	18	88	0	59	13	11	51	23	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16642422--16642498	21	3.7	21	76	0	82	32	24	12	29	1.93
16643599--16643701	26	4.0	26	79	5	118	33	22	17	27	1.96
16658595--16658672	30	2.6	30	76	15	72	50	5	1	43	1.32
16660071--16660160	27	3.3	27	70	20	71	63	0	1	35	1.02
16660071--16660162	25	3.4	25	70	18	69	63	0	1	35	1.02
16663641--16663665	12	2.1	12	100	0	50	16	8	0	76	1.02
16666462--16666511	20	2.5	20	83	9	57	42	0	14	44	1.44
16668227--16668303	21	3.5	21	74	19	68	20	10	28	40	1.86
16670716--16670868	80	1.9	81	89	1	236	32	25	19	22	1.98
16674621--16674939	153	2.1	155	90	1	498	36	19	9	34	1.84
16676403--16676459	22	2.6	22	97	0	105	36	15	12	35	1.85
16680712--16680753	18	2.3	19	84	12	52	26	4	0	69	1.08
16685368--16685405	11	3.5	11	82	3	51	78	5	5	10	1.06
16687918--16687950	16	2.1	15	94	5	57	3	12	0	84	0.72
16693355--16693441	22	4.0	22	95	0	147	11	24	25	39	1.89
16693445--16693498	25	2.2	24	83	3	63	12	27	14	44	1.82
16705141--16705323	34	5.3	35	72	17	109	33	4	2	59	1.29
16705163--16705306	18	8.2	18	65	24	67	31	4	2	61	1.26
16705182--16705233	15	3.5	15	80	10	54	34	3	0	61	1.14
16705286--16705347	20	3.2	20	80	14	60	33	3	0	62	1.11
16705244--16705347	19	5.6	19	67	21	69	34	1	2	60	1.23
16705308--16705362	18	3.1	18	76	12	51	40	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16705362--16705429	21	3.3	21	84	8	70	63	2	4	29	1.29
16705359--16705546	53	3.5	54	79	11	224	61	2	4	31	1.29
16705363--16705528	55	3.1	55	83	10	200	61	3	4	30	1.32
16705492--16705558	15	4.5	15	76	22	61	64	0	2	32	1.09
16705380--16705532	21	8.1	20	68	25	84	61	2	4	31	1.30
16706483--16706523	13	2.9	15	79	17	52	46	0	4	48	1.23
16707550--16707582	14	2.4	14	90	5	50	0	39	0	60	0.97
16709324--16709363	21	2.0	20	85	5	53	42	7	5	45	1.54
16712462--16712514	24	2.2	24	86	0	70	28	11	11	49	1.73
16714435--16714489	24	2.3	24	87	0	74	29	10	10	49	1.72
16716299--16716358	16	3.8	16	93	0	84	40	21	23	15	1.91
16716343--16716465	23	5.3	23	75	7	95	39	19	26	14	1.90
16720464--16720560	17	5.7	17	67	18	58	38	3	4	54	1.35
16720466--16720593	68	1.9	69	90	1	204	39	3	4	53	1.38
16724182--16724216	18	1.9	18	88	0	52	48	5	8	37	1.58
16727335--16727451	29	4.0	28	79	15	89	23	11	3	60	1.46
16727473--16727508	18	2.1	18	89	5	56	27	11	0	61	1.30
16744966--16745030	2	32.5	2	100	0	130	50	0	0	49	1.00
16746038--16746063	5	5.2	5	100	0	52	80	0	0	19	0.71
16746914--16747095	101	1.8	101	81	2	231	27	18	20	34	1.96
16747242--16747386	50	2.9	50	82	0	146	20	24	17	37	1.93
16747299--16747603	50	6.1	50	86	2	326	20	23	20	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16747314--16747603	150	1.9	150	83	2	368	21	23	20	35	1.96
16759248--16759284	4	9.0	4	96	3	65	72	0	0	27	0.84
16760298--16760330	14	2.2	16	89	10	52	66	0	3	30	1.06
16761061--16761093	14	2.4	14	94	0	57	30	0	21	48	1.50
16763525--16763559	18	1.9	18	88	0	52	40	0	0	60	0.97
16770003--16770120	40	2.9	39	85	7	148	31	20	36	11	1.89
16770003--16770123	60	2.0	60	85	0	161	31	20	35	12	1.90
16770003--16770123	20	6.1	20	82	1	127	31	20	35	12	1.90
16772178--16772240	13	4.8	13	71	7	56	38	17	6	38	1.75
16773250--16773306	24	2.4	24	90	0	87	26	15	7	50	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132