genome.fa.s12.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  100  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30641798--30642407	99	6.2	98	74	6	425	34	16	31	16	1.92
30641805--30642422	49	12.6	49	73	7	355	34	17	31	16	1.92
30641798--30642407	148	4.1	147	77	9	507	34	16	31	16	1.92
30641991--30642465	246	1.9	245	82	3	589	34	17	31	17	1.92
30642662--30643571	78	11.7	78	83	1	899	25	30	17	26	1.98
30642816--30643588	39	19.8	39	68	11	330	25	30	18	26	1.98
30645359--30645690	30	11.1	30	78	11	254	35	26	2	35	1.71
30646917--30646942	11	2.4	11	100	0	52	19	7	0	73	1.07
30647654--30647700	21	2.2	21	84	3	58	53	12	2	31	1.51
30647654--30647729	35	2.1	35	83	7	91	52	13	2	31	1.54
30649588--30649622	14	2.5	14	90	0	52	42	5	20	31	1.75
30649997--30650022	12	2.2	12	100	0	52	42	30	7	19	1.79
30660654--30660698	22	2.0	23	83	12	58	55	0	2	42	1.12
30660704--30660759	26	2.1	27	83	9	71	51	5	5	37	1.47
30663511--30663556	24	1.9	24	86	0	65	41	8	26	23	1.83
30669031--30669075	23	1.9	24	90	4	74	53	6	4	35	1.47
30675276--30675309	9	3.7	9	84	7	50	47	23	20	8	1.78
30689279--30689308	14	2.1	14	93	0	51	33	10	6	50	1.62
30688803--30693136	487	9.0	487	97	1	8113	32	15	23	27	1.95
30690712--30690741	14	2.1	14	100	0	60	33	13	6	46	1.69
30691199--30691228	14	2.1	14	100	0	60	33	13	6	46	1.69
30692159--30692188	14	2.1	14	100	0	60	33	13	6	46	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30688804--30693136	960	4.5	960	97	2	8154	32	15	23	27	1.95
30693396--30693494	43	2.3	43	80	0	117	27	24	20	28	1.99
30693439--30693555	61	1.9	61	91	0	189	30	25	17	25	1.97
30693503--30693849	43	8.1	43	84	1	405	29	27	18	25	1.98
30694119--30694255	66	2.1	66	82	5	161	15	27	16	40	1.88
30696720--30696843	41	3.0	41	75	7	133	20	23	19	37	1.95
30698389--30698505	41	2.8	42	79	3	139	20	29	17	32	1.96
30698444--30698662	41	5.3	41	79	3	210	22	25	21	30	1.99
30698444--30698743	82	3.7	82	75	3	273	23	26	21	29	1.99
30705441--30705503	26	2.4	26	83	2	72	60	25	1	12	1.42
30724097--30724132	14	2.5	15	90	4	56	47	0	2	50	1.15
30724567--30724612	24	2.0	23	86	4	65	34	0	2	63	1.07
30724567--30724624	22	2.5	24	83	8	68	31	0	3	65	1.09
30724564--30724622	24	2.5	23	78	8	64	32	0	1	66	1.02
30733815--30733898	23	3.8	23	70	23	65	39	3	0	57	1.16
30742200--30742246	16	2.9	16	80	3	58	55	0	25	19	1.43
30742200--30742253	16	3.5	15	80	12	56	55	0	24	20	1.43
30743148--30743216	34	2.0	34	91	0	111	28	26	4	40	1.75
30744303--30744376	17	4.4	17	77	6	78	37	2	6	52	1.42
30744985--30745031	19	2.2	21	85	14	62	40	4	0	55	1.19
30746142--30746539	29	13.7	28	76	12	240	33	24	3	38	1.71
30746133--30746350	59	3.7	57	80	8	172	35	25	3	36	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30746142--30746509	145	2.5	146	79	9	421	33	24	3	38	1.72
30746195--30746510	57	5.5	57	77	11	272	33	24	3	38	1.73
30746135--30746510	116	3.2	116	82	5	431	33	24	3	38	1.72
30746656--30746720	28	2.3	28	81	7	78	16	9	4	69	1.32
30746664--30746708	13	3.2	14	82	17	58	15	11	0	73	1.10
30746662--30746709	15	3.5	14	76	23	57	16	12	0	70	1.16
30746840--30747033	97	2.0	97	89	0	298	28	15	17	38	1.90
30758626--30759420	78	10.2	77	82	4	832	23	30	20	25	1.99
30758626--30759420	155	5.1	156	83	2	947	23	30	20	25	1.99
30758655--30759394	39	19.1	39	73	8	542	23	30	20	25	1.98
30760533--30760579	19	2.2	21	85	14	62	40	6	0	53	1.27
30761719--30761835	60	2.0	59	88	5	173	35	22	0	41	1.60
30761704--30762028	59	5.6	59	75	4	241	35	23	3	37	1.72
30761717--30762125	29	14.0	29	74	10	271	35	23	3	37	1.71
30761754--30762030	145	1.9	146	82	7	350	36	24	3	36	1.72
30762203--30762241	15	2.6	15	84	11	53	17	7	2	71	1.21
30762203--30762250	14	3.3	15	78	21	57	18	8	4	68	1.31
30762367--30762560	97	2.0	97	91	4	320	26	18	17	38	1.92
30764459--30764489	16	1.9	16	93	0	53	67	6	3	22	1.28
30765142--30765188	21	2.2	21	85	7	60	46	6	0	46	1.28
30765230--30765292	24	2.7	23	78	9	58	58	6	1	33	1.33
30765046--30765604	138	4.1	137	77	12	505	44	9	3	42	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30768935--30768998	26	2.5	26	74	5	67	64	6	7	21	1.43
30769166--30769241	29	2.6	28	84	10	91	65	1	10	22	1.30
30770313--30770516	102	2.0	102	93	1	349	27	12	12	48	1.76
30775828--30775894	6	11.8	6	71	17	54	41	0	4	53	1.21
30775854--30775894	10	3.8	10	82	17	55	41	0	2	56	1.13
30775833--30775880	17	2.8	17	80	0	60	39	0	6	54	1.26
30775831--30775894	23	2.8	22	84	11	76	39	0	4	56	1.20
30776200--30776238	12	3.0	13	85	11	53	56	15	25	2	1.52
30777530--30778001	30	16.1	28	71	14	249	35	23	4	36	1.75
30777530--30777851	89	3.6	90	81	7	281	35	23	3	36	1.73
30777534--30777908	59	6.4	57	72	13	210	36	23	4	36	1.74
30777572--30777952	29	13.0	30	73	12	199	35	23	3	37	1.73
30777818--30778034	59	3.7	58	82	6	224	32	23	6	37	1.80
30777924--30778046	58	2.1	59	80	1	131	35	22	7	34	1.82
30788389--30788422	16	2.2	16	89	5	52	64	2	0	32	1.08
30798157--30798197	17	2.4	16	88	11	64	73	0	12	14	1.11
30800066--30800241	19	9.3	19	78	2	174	32	18	27	21	1.96
30800188--30800249	19	3.3	18	77	4	61	32	16	27	24	1.96
30800066--30800241	57	3.1	57	79	4	194	32	18	27	21	1.96
30805481--30805575	50	1.9	50	89	8	149	48	6	13	31	1.68
30810915--30811051	55	2.5	55	82	8	163	26	16	25	31	1.97
30812081--30812113	17	1.9	17	93	0	57	51	15	18	15	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30812220--30812263	17	2.4	19	78	21	58	0	29	9	61	1.27
30819603--30819713	32	3.8	30	72	18	92	43	0	2	53	1.21
30820912--30820941	14	2.1	14	93	0	51	53	3	16	26	1.59
30821956--30822004	14	3.1	15	82	14	55	38	0	6	55	1.25
30825181--30825256	28	2.7	29	81	4	82	35	18	18	27	1.94
30825210--30825264	28	2.0	28	92	0	92	36	18	16	29	1.92
30838220--30838345	32	4.3	29	68	24	77	41	0	3	54	1.22
30838241--30838274	16	2.0	16	88	11	50	35	0	0	64	0.94
30838236--30838344	32	3.7	31	74	17	99	42	0	2	55	1.14
30839546--30839575	14	2.1	14	93	0	51	53	3	16	26	1.59
30840590--30840638	14	3.1	15	82	14	55	38	2	4	55	1.31
30848739--30848811	37	2.0	37	97	0	137	23	6	21	47	1.74
30855439--30855489	21	2.4	22	86	3	68	23	11	23	41	1.87
30858910--30858950	4	10.2	4	100	0	82	51	24	0	24	1.49
30858888--30858984	28	3.5	28	73	10	108	49	22	5	22	1.69
30859232--30859555	144	2.2	142	86	10	431	44	4	7	43	1.53
30859540--30859608	24	2.8	24	72	22	63	44	5	10	39	1.62
30860156--30860195	21	2.0	21	85	5	55	20	5	5	70	1.26
30865627--30865677	24	2.1	24	92	0	84	33	23	21	21	1.97
30876366--30876410	17	2.5	19	85	7	58	17	11	6	64	1.46
30876372--30876410	19	2.2	17	86	9	51	17	7	5	69	1.32
30886390--30886434	20	2.2	20	84	0	54	80	4	13	2	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30886832--30887264	42	10.3	42	85	2	528	22	19	21	36	1.95
30886832--30887264	126	3.4	126	87	2	593	22	19	21	36	1.95
30886832--30887290	84	5.5	84	86	2	589	22	18	22	36	1.95
30887735--30887780	3	15.3	3	100	0	92	34	0	0	65	0.93
30888181--30888851	148	4.5	146	82	9	630	42	3	9	44	1.54
30888305--30888546	51	4.9	50	69	14	160	41	2	9	45	1.52
30888182--30888851	147	4.4	148	82	9	759	42	3	9	44	1.54
30888618--30888686	33	2.1	33	94	5	122	31	7	10	50	1.63
30896940--30897004	30	2.2	30	91	0	103	63	3	9	24	1.39
30905268--30905297	15	1.9	16	93	6	53	63	3	0	33	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132