genome.fa.s12.2.7.7.80.10.50.1000.130.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  130  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40351883--40351942	29	2.1	30	84	6	79	43	0	6	50	1.28
40352484--40352510	13	2.1	13	100	0	54	14	37	22	25	1.93
40358614--40358677	29	2.2	30	86	8	96	43	17	10	28	1.82
40360020--40360054	18	1.9	18	88	0	52	25	25	0	48	1.51
40360351--40360386	18	2.1	18	89	5	56	33	25	0	41	1.55
40360759--40360788	15	1.9	16	93	6	53	0	16	3	80	0.85
40372707--40372759	18	2.9	18	85	0	79	15	9	28	47	1.76
40372955--40372999	20	2.2	20	80	0	54	22	13	11	53	1.71
40372967--40373005	20	2.0	20	89	0	60	25	10	10	53	1.66
40378624--40378665	21	2.0	21	86	4	59	69	16	0	14	1.20
40378624--40378697	32	2.3	32	85	0	103	67	16	2	13	1.34
40378637--40378709	32	2.3	32	85	4	94	68	19	2	9	1.30
40378712--40378766	20	2.8	19	83	8	74	69	18	7	5	1.32
40378638--40378735	44	2.2	44	78	7	101	67	19	4	9	1.35
40378720--40378801	23	3.8	21	76	10	76	69	17	6	7	1.32
40390187--40390243	27	2.1	27	83	9	71	31	12	24	31	1.92
40390232--40390419	58	3.2	59	88	5	249	32	3	30	32	1.75
40390252--40390469	29	7.5	27	70	21	122	31	4	31	33	1.77
40390253--40390420	58	2.9	59	90	2	259	30	3	32	33	1.75
40390248--40390469	58	3.8	55	83	11	200	32	4	31	32	1.77
40408949--40408981	16	1.9	18	88	11	52	75	6	0	18	1.00
40409162--40409206	12	3.8	12	78	0	54	77	13	2	6	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40409162--40409206	24	1.9	23	86	4	63	77	13	2	6	1.05
40409176--40409221	18	2.4	19	85	7	58	73	10	4	10	1.22
40409236--40409324	19	4.5	19	76	14	81	65	16	7	10	1.46
40410424--40410476	20	2.7	20	84	0	70	20	11	13	54	1.69
40412253--40412290	19	2.0	19	89	0	58	39	5	15	39	1.70
40415163--40415350	97	1.9	98	89	3	290	37	14	18	28	1.91
40415626--40415701	30	2.7	29	84	8	93	39	1	23	35	1.63
40415647--40416008	29	12.5	28	79	7	287	35	3	25	36	1.72
40415677--40416009	59	5.8	56	76	11	262	35	3	25	36	1.73
40416738--40416789	27	1.9	27	84	7	70	36	5	5	51	1.50
40417007--40417047	18	2.2	19	87	12	59	58	0	9	31	1.31
40417635--40417743	6	19.0	6	70	14	61	54	4	2	38	1.36
40417644--40417745	17	6.1	17	79	7	102	55	4	1	37	1.32
40417637--40417680	22	2.0	23	81	4	54	56	2	2	38	1.24
40419888--40420254	59	6.2	60	78	9	264	33	25	2	37	1.71
40419917--40420254	89	3.8	88	82	6	262	34	26	2	36	1.72
40419908--40420260	30	12.0	29	77	10	240	33	27	2	36	1.72
40420123--40420298	59	3.0	57	82	9	194	34	28	3	32	1.76
40420095--40420287	29	6.6	29	77	11	173	34	28	4	33	1.76
40430886--40430923	20	1.9	20	84	10	51	18	13	13	55	1.69
40437048--40437090	22	2.0	22	86	9	61	46	4	0	48	1.22
40437137--40437161	13	1.9	13	100	0	50	64	0	0	36	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40437156--40437194	15	2.6	15	83	0	51	61	0	2	35	1.10
40450883--40450907	9	2.8	9	100	0	50	48	0	0	52	1.00
40458898--40459165	29	9.2	29	69	15	149	33	2	29	33	1.72
40458859--40459167	59	5.3	59	90	4	439	33	2	29	33	1.73
40461014--40461072	6	9.8	6	72	20	52	52	1	5	40	1.33
40461015--40461072	17	3.6	17	77	17	70	53	1	5	39	1.33
40461652--40461941	158	1.8	158	92	0	490	31	25	21	22	1.98
40462873--40462910	15	2.5	15	91	4	58	21	10	0	68	1.19
40464548--40464618	35	2.0	35	86	0	97	28	19	32	19	1.97
40465941--40466052	43	2.6	43	87	2	145	28	17	25	27	1.98
40472672--40472708	17	2.2	17	90	0	56	59	2	0	37	1.12
40472702--40472747	19	2.4	19	89	7	67	58	13	4	23	1.52
40473080--40473159	27	3.0	26	83	7	90	45	22	7	25	1.78
40474664--40474813	30	5.1	30	63	22	84	31	30	4	34	1.78
40474656--40474841	59	3.2	58	86	1	257	31	29	4	34	1.77
40474736--40474931	29	6.7	31	71	18	109	33	28	3	35	1.73
40474792--40474954	88	1.8	89	85	6	233	33	28	2	35	1.71
40474737--40474958	29	7.6	28	71	19	102	32	28	3	35	1.73
40476349--40476408	31	2.0	30	90	3	93	43	15	8	33	1.76
40485426--40485462	17	2.2	17	90	0	56	59	2	0	37	1.12
40485456--40485501	19	2.4	19	89	7	67	58	13	4	23	1.52
40485834--40485913	27	3.0	26	83	7	90	45	22	7	25	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40487418--40487567	30	5.1	30	63	22	84	31	30	4	34	1.78
40487410--40487595	59	3.2	58	86	1	257	31	29	4	34	1.77
40487490--40487685	29	6.7	31	71	18	109	33	28	3	35	1.73
40487546--40487708	88	1.8	89	85	6	233	33	28	2	35	1.71
40487491--40487712	29	7.6	28	71	19	102	32	28	3	35	1.73
40489103--40489162	31	2.0	30	90	3	93	43	15	8	33	1.76
40491795--40491834	21	1.9	21	94	0	71	72	10	0	17	1.11
40504583--40504671	20	4.0	21	70	24	74	48	5	0	46	1.26
40508411--40508449	15	2.6	15	87	0	51	58	0	12	28	1.34
40515582--40515615	16	2.1	16	88	5	50	41	5	0	52	1.25
40518130--40518192	27	2.4	25	89	5	90	57	0	4	38	1.20
40518130--40518194	25	2.5	27	90	5	98	56	0	6	36	1.24
40523776--40523817	18	2.3	18	95	0	75	28	4	30	35	1.78
40528488--40528630	4	36.8	4	88	5	123	48	34	0	16	1.47
40530184--40530225	16	2.6	16	85	10	59	26	0	0	73	0.83
40533827--40533855	14	2.1	14	100	0	58	44	20	0	34	1.52
40535451--40535480	15	1.9	16	93	6	53	53	0	0	46	1.00
40544177--40544239	33	1.9	33	81	12	76	49	4	0	46	1.23
40551410--40551529	58	2.1	58	90	6	190	48	18	0	33	1.48
40555370--40555664	60	4.9	62	81	11	290	28	15	14	41	1.87
40555381--40555664	121	2.3	121	83	7	353	29	15	13	40	1.86
40555829--40555928	51	2.0	51	97	0	191	27	11	24	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40556848--40556896	11	4.4	11	76	5	53	42	10	2	44	1.49
40557041--40557086	23	2.0	23	82	0	56	34	13	8	43	1.74
40557888--40557931	14	3.1	14	90	6	63	9	0	6	84	0.79
40557894--40557929	18	1.9	18	88	5	54	11	0	5	83	0.80
40560257--40560386	63	2.1	63	79	5	138	56	10	10	23	1.63
40595141--40595455	156	2.0	159	87	1	456	44	19	6	29	1.76
40595988--40596023	17	2.1	18	89	5	56	63	0	2	33	1.08
40598779--40598820	17	2.3	19	80	8	52	33	0	2	64	1.07
40603342--40603376	16	2.2	16	89	0	52	71	8	0	20	1.11
40620915--40620989	28	2.6	28	78	15	91	36	29	0	34	1.58
40620949--40621436	59	8.3	59	81	7	507	33	29	3	33	1.74
40620917--40621283	29	12.6	28	70	15	176	34	30	1	32	1.69
40621952--40622282	153	2.2	152	88	5	481	34	17	13	35	1.88
40658721--40658790	28	2.4	29	79	13	74	45	2	2	48	1.32
40663911--40663940	12	2.6	11	90	10	51	36	0	3	60	1.14
40667297--40667339	21	2.1	20	83	12	52	34	4	4	55	1.41
40669699--40669950	136	1.8	137	83	2	337	32	25	18	23	1.97
40669840--40670046	114	1.8	114	89	2	326	32	28	20	19	1.97
40683386--40683414	2	14.5	2	100	0	58	0	0	48	51	1.00
40693643--40693917	144	1.9	144	88	5	412	49	18	11	20	1.77
40693796--40693982	96	1.9	97	81	3	225	49	15	11	22	1.77
40699745--40699786	20	2.1	20	100	0	84	30	21	0	47	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40701249--40701294	19	2.4	19	100	0	92	26	17	23	32	1.97
40705280--40705313	12	2.8	12	86	0	50	23	17	23	35	1.95
40705482--40705555	32	2.3	32	85	0	103	27	13	14	44	1.83
40709052--40709095	23	2.0	22	90	4	70	50	13	9	27	1.72
40710850--40710916	25	2.7	24	83	6	71	32	7	5	53	1.53
40710873--40710921	25	2.0	24	88	8	71	32	12	8	46	1.71
40710934--40710990	29	1.9	29	85	3	78	35	8	7	49	1.61
40731286--40731330	21	2.1	22	84	8	58	55	0	4	40	1.20
40731300--40731341	20	2.2	19	83	12	50	52	0	0	47	1.00
40734007--40734039	3	11.0	3	100	0	66	33	0	0	66	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132