genome.fa.s12.2.7.7.80.10.50.1000.33.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  33  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8978821--8978864	13	3.4	14	84	9	58	63	2	0	34	1.07
8980031--8980110	33	2.4	33	78	0	88	38	22	18	20	1.93
8984105--8984160	21	2.5	21	85	8	76	28	10	26	33	1.90
8995767--8995801	14	2.5	14	90	9	54	31	14	5	48	1.67
8996516--8996555	21	1.9	21	89	0	62	20	12	27	40	1.88
8996567--8996620	28	1.9	28	85	7	74	33	7	24	35	1.83
8996920--8996958	19	2.0	19	90	5	60	61	0	0	38	0.96
8997012--8997050	20	2.0	20	90	5	62	25	7	0	66	1.18
8998643--8998667	4	6.2	4	100	0	50	24	0	0	76	0.80
9003782--9003830	22	2.2	22	92	0	80	79	0	20	0	0.73
9004713--9004895	49	3.7	49	77	1	170	37	14	27	20	1.92
9004713--9004890	98	1.8	98	82	2	232	37	14	28	19	1.91
9005130--9005218	40	2.2	39	86	7	117	33	21	14	30	1.93
9005201--9005238	20	1.9	20	89	10	60	31	26	7	34	1.85
9005251--9006810	40	39.3	40	76	8	992	31	26	18	24	1.97
9005227--9006833	437	3.7	436	78	7	1469	31	26	17	25	1.97
9005225--9006833	79	20.3	78	79	6	1052	31	26	17	24	1.97
9007360--9007504	67	2.2	68	86	7	228	46	0	4	48	1.26
9008658--9008725	3	22.7	3	100	0	136	33	0	0	66	0.92
9009106--9009267	88	1.8	87	83	7	211	41	19	6	32	1.78
9009374--9009404	15	2.1	15	93	0	53	70	0	0	29	0.87
9009501--9009557	19	2.9	21	79	12	75	63	0	12	24	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9009730--9009781	10	5.3	10	79	4	61	28	1	3	65	1.21
9009730--9009780	19	2.6	19	76	11	59	29	1	3	64	1.22
9017282--9017313	15	2.1	16	88	11	50	71	3	0	25	1.00
9023185--9023212	12	2.3	12	100	0	56	28	14	17	39	1.89
9031200--9031280	34	2.4	34	83	4	110	33	16	14	35	1.89
9036375--9036451	37	2.0	38	90	5	120	31	22	18	28	1.97
9042327--9042351	9	2.8	9	100	0	50	80	0	8	12	0.92
9042348--9042462	61	1.9	61	82	7	144	38	16	8	36	1.80
9043503--9043624	60	2.1	59	82	4	147	40	4	13	41	1.65
9055783--9055813	16	1.9	16	93	0	53	45	0	48	6	1.28
9056112--9056281	63	2.8	61	86	7	236	52	4	0	42	1.24
9056809--9057077	40	6.8	39	75	6	238	23	18	27	30	1.98
9056809--9057077	79	3.4	79	91	0	394	23	18	27	30	1.98
9057099--9057211	50	2.3	50	81	6	131	23	28	18	30	1.98
9061077--9061123	17	3.1	17	71	28	59	27	8	25	38	1.85
9061068--9061123	29	1.9	29	100	0	112	26	7	28	37	1.83
9061998--9062074	31	2.5	31	89	4	113	42	10	15	31	1.81
9064290--9064459	67	2.8	60	82	15	197	52	4	0	42	1.25
9064314--9064459	67	2.3	61	88	10	206	56	3	0	39	1.21
9064433--9064471	21	1.9	20	94	5	69	74	0	2	23	0.94
9064314--9064478	67	2.5	66	82	13	205	57	3	0	38	1.19
9066018--9066132	31	3.7	30	76	13	101	48	4	2	44	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9066315--9066376	29	2.1	31	84	6	83	29	1	19	50	1.57
9084731--9084760	15	2.0	15	93	0	51	30	0	0	70	0.88
9084712--9084760	23	2.3	23	89	10	77	28	2	2	67	1.13
9085275--9085326	16	3.2	16	83	8	61	73	1	0	25	0.94
9085291--9085333	16	2.6	17	89	7	63	72	2	0	25	0.97
9085292--9085332	21	1.9	20	85	14	55	73	2	0	24	0.96
9086135--9086176	20	2.1	20	100	0	84	47	33	4	14	1.65
9102901--9102987	31	2.8	31	75	1	95	41	4	5	48	1.48
9103116--9103174	29	2.0	30	83	3	75	49	13	6	30	1.68
9104537--9104591	24	2.4	23	82	8	69	43	29	10	16	1.82
9106288--9106316	9	3.2	9	100	0	58	41	13	0	44	1.44
9116511--9116544	2	17.0	2	100	0	68	50	0	0	50	1.00
9119853--9119889	20	1.9	20	94	5	67	40	5	5	48	1.49
9121396--9121448	27	2.0	27	85	7	72	45	0	5	49	1.26
9124400--9124457	31	1.9	30	89	3	89	44	6	1	46	1.40
9124612--9124678	9	7.4	9	70	17	50	31	1	2	64	1.18
9124595--9124666	28	2.5	30	78	10	89	37	2	1	58	1.21
9125527--9125560	17	2.0	17	94	0	59	17	44	5	32	1.73
9129498--9129598	12	8.5	12	77	2	78	66	16	7	8	1.43
9129510--9129578	35	2.0	33	86	5	93	65	15	10	8	1.47
9129498--9129609	24	4.8	24	83	3	102	66	15	8	9	1.42
9129541--9129619	24	3.3	24	84	7	83	67	11	8	12	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9129611--9129637	12	2.2	12	100	0	54	66	14	0	18	1.25
9129630--9129669	21	1.9	21	89	0	62	67	20	5	7	1.34
9129629--9129676	21	2.3	20	82	10	60	66	18	8	6	1.39
9131645--9131959	88	3.5	88	79	8	318	38	17	7	36	1.78
9131645--9131960	90	3.6	89	81	6	338	38	18	7	36	1.78
9132096--9132154	21	2.9	21	80	5	68	57	0	1	40	1.09
9132083--9132151	20	3.4	21	78	8	70	63	0	1	34	1.03
9132127--9132188	19	3.2	19	75	11	54	66	0	4	29	1.12
9132206--9132261	27	2.1	26	87	12	78	67	3	5	23	1.27
9132696--9132852	83	1.9	83	81	7	194	33	8	15	42	1.78
9132905--9132961	21	2.8	20	84	5	78	24	1	1	71	1.04
9133078--9133155	20	3.8	21	80	8	81	38	1	1	58	1.14
9133103--9133154	22	2.5	20	87	9	77	46	0	0	53	1.00
9133097--9133173	10	7.7	10	70	9	50	38	1	1	58	1.15
9136090--9136126	12	3.2	12	88	7	58	45	0	0	54	1.00
9137898--9138378	241	2.0	241	95	0	854	35	13	20	29	1.92
9147369--9147421	2	26.5	2	96	0	97	52	0	0	47	1.00
9147646--9147678	15	2.1	16	88	5	50	54	3	21	21	1.58
9150128--9150159	14	2.4	14	94	5	57	21	15	6	56	1.62
9154914--9154962	20	2.5	19	81	12	55	42	2	6	48	1.39
9159464--9159570	30	3.6	29	76	10	108	42	17	5	34	1.73
9159456--9159570	60	1.9	58	84	3	149	41	16	5	36	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9163056--9163084	10	2.7	11	94	5	51	86	0	13	0	0.58
9163666--9163729	7	9.0	7	80	13	69	78	0	21	0	0.76
9163654--9163728	21	3.2	22	76	20	64	80	0	20	0	0.72
9163656--9163726	27	2.7	26	87	10	99	78	0	21	0	0.74
9163666--9163729	21	3.0	20	84	11	83	78	0	21	0	0.76
9164616--9164828	49	4.3	49	74	3	151	32	16	30	20	1.95
9164642--9164822	98	1.8	98	80	0	218	31	16	31	20	1.95
9164741--9164841	49	2.1	48	81	7	114	34	18	26	19	1.95
9165179--9165501	79	4.1	78	85	3	423	31	25	16	26	1.96
9165296--9165699	198	2.0	198	88	0	594	30	26	17	24	1.97
9165179--9165838	119	5.6	117	73	8	485	30	26	17	25	1.97
9165450--9165837	79	4.9	79	88	0	535	29	27	19	23	1.98
9165253--9165739	158	3.1	154	79	8	412	31	26	18	24	1.97
9165149--9165771	277	2.2	277	87	2	896	30	26	17	24	1.97
9165113--9165838	40	18.4	39	72	9	399	30	26	17	25	1.97
9167465--9167589	30	4.2	30	80	12	132	36	20	7	36	1.80
9175970--9176015	21	2.2	21	85	14	60	65	10	19	4	1.41
9175969--9176016	22	2.2	22	79	20	57	66	10	18	4	1.37
9177306--9177437	30	4.3	31	81	8	137	38	19	3	37	1.70
9177219--9177437	90	2.4	90	79	8	230	38	19	2	38	1.66
9189440--9189607	40	4.2	40	74	13	141	32	22	19	25	1.97
9189439--9189607	78	2.1	80	80	7	193	32	21	19	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9191309--9191538	30	7.7	30	76	13	156	36	19	3	41	1.67
9191309--9191533	59	3.8	58	74	15	172	36	17	3	42	1.65
9191310--9191571	120	2.2	120	79	9	259	35	20	3	40	1.68
9203174--9203211	17	2.2	18	85	4	51	26	2	5	65	1.27
9203293--9203383	18	4.8	18	67	24	53	20	2	7	69	1.24
9203341--9203389	16	2.9	18	80	20	61	18	2	8	71	1.21
9205685--9205762	40	2.0	40	89	0	120	20	24	5	50	1.68
9205764--9205819	29	1.9	29	85	0	76	41	23	5	30	1.76
9206669--9206695	13	2.1	13	100	0	54	22	0	0	77	0.76
9213715--9213744	15	1.9	16	93	6	53	26	23	10	40	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132