genome.fa.s12.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  2  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
328104--328182	30	2.6	30	80	7	81	29	13	2	54	1.53
335056--335087	3	10.7	3	93	0	55	37	0	28	34	1.57
348978--349041	29	2.2	30	81	13	80	21	0	4	73	1.01
350710--350743	17	1.9	18	94	5	61	17	5	5	70	1.28
354411--354435	11	2.3	11	100	0	50	24	12	16	48	1.79
356848--356888	9	4.8	9	82	11	50	70	2	0	26	0.99
401508--401574	29	2.3	30	81	2	82	37	10	16	35	1.83
412825--412874	22	2.3	22	100	0	100	48	12	14	26	1.78
425368--425751	172	2.2	170	85	4	502	30	11	18	39	1.86
426661--426702	21	2.0	22	86	13	61	45	16	16	21	1.86
427779--427828	23	2.1	24	85	3	66	70	0	2	28	0.99
442748--442781	16	2.0	18	88	11	54	35	5	0	58	1.22
444584--444625	2	21.0	2	100	0	84	0	50	0	50	1.00
446967--446994	14	2.0	14	100	0	56	21	21	14	42	1.88
452529--452576	24	2.0	24	100	0	96	58	4	0	37	1.18
454271--454307	18	2.1	18	90	5	58	48	0	5	45	1.25
458310--458349	19	2.1	19	100	0	80	25	10	25	40	1.86
459649--459711	30	2.1	31	81	3	74	39	1	6	52	1.37
460735--460807	31	2.4	30	81	4	92	38	13	13	34	1.85
460913--461082	61	2.8	61	82	3	182	40	14	7	38	1.74
467526--467589	27	2.4	27	86	5	85	46	0	0	53	1.00
475386--476697	445	2.9	445	96	0	2347	32	17	16	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
480279--480552	142	2.0	136	88	8	405	47	12	10	29	1.75
481915--481953	21	1.9	20	84	5	51	58	0	0	41	0.98
487727--487790	28	2.3	28	80	0	83	23	6	15	54	1.64
490014--490064	23	2.2	21	83	16	66	35	0	0	64	0.94
490452--490511	11	5.5	11	71	15	52	45	1	0	53	1.10
490451--490528	33	2.6	28	71	22	68	43	2	1	52	1.23
490657--490719	30	2.1	30	85	2	83	28	15	1	53	1.51
490746--490782	16	2.3	16	90	0	56	32	2	2	62	1.23
493441--493490	4	12.5	4	78	0	55	42	24	8	26	1.82
496899--496927	8	3.6	8	100	0	58	44	0	0	55	0.99
501003--501065	11	5.5	11	86	5	90	42	3	0	53	1.16
500995--501082	17	5.2	17	78	14	85	44	2	1	52	1.21
501010--501064	6	9.7	6	80	11	71	45	1	0	52	1.11
501258--501288	15	2.1	15	100	0	62	19	54	12	12	1.70
501759--501791	3	11.0	3	93	0	57	63	0	0	36	0.95
502855--503079	30	7.5	30	92	0	360	36	22	4	37	1.73
503094--503188	30	3.2	30	71	13	88	33	26	3	36	1.72
504208--504240	10	3.2	11	87	12	52	24	9	9	57	1.58
504635--504684	19	2.7	19	82	17	61	58	4	0	38	1.17
504740--504786	22	2.1	22	85	14	62	59	2	0	38	1.09
504745--504798	22	2.7	19	76	20	56	62	1	1	33	1.16
504777--504825	17	2.8	18	78	3	55	67	0	2	30	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
510532--510561	15	2.0	15	93	0	51	30	0	0	70	0.88
510534--510578	23	2.0	23	82	8	56	37	0	0	62	0.96
520248--520289	21	2.0	22	85	4	59	40	2	7	50	1.43
520399--520454	29	2.0	27	83	13	69	60	1	1	35	1.17
524769--524809	15	2.5	17	80	11	59	63	0	2	34	1.08
524759--524809	24	2.1	25	85	3	68	58	0	1	39	1.09
525343--525375	11	2.8	12	90	4	50	12	21	3	63	1.41
525641--525675	17	2.1	17	88	0	52	54	0	0	45	0.99
525934--525993	29	2.1	28	84	3	75	65	1	10	23	1.32
526537--526579	19	2.3	19	96	4	79	34	13	27	23	1.93
526900--527627	378	1.9	378	86	3	1027	34	10	31	23	1.88
531832--531898	16	4.3	15	71	19	57	41	1	2	53	1.25
531898--531950	18	3.1	17	86	7	72	64	1	0	33	1.05
533364--533394	13	2.4	13	94	0	53	25	6	3	64	1.33
533387--533640	56	4.4	56	82	4	247	28	20	16	35	1.94
533603--533696	47	2.0	46	89	2	143	28	15	20	35	1.94
533653--533879	59	3.8	58	75	15	180	29	19	14	35	1.92
537255--537453	61	3.1	60	77	14	218	34	14	22	29	1.93
537294--537432	69	2.0	68	88	4	208	35	13	19	30	1.91
537452--537578	55	2.3	55	83	0	173	34	19	19	25	1.96
540477--540502	13	2.0	13	100	0	52	30	30	0	38	1.58
549493--549552	29	2.0	30	84	12	79	38	15	11	35	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
560421--560454	13	2.5	14	85	9	52	23	0	0	76	0.79
563976--564000	12	2.1	12	100	0	50	24	0	16	60	1.36
564502--564561	17	3.5	17	79	0	66	40	3	5	51	1.40
565407--565437	12	2.6	12	94	0	53	48	0	0	51	1.00
565378--565439	15	4.3	15	74	14	58	51	0	3	45	1.17
566390--566500	29	3.8	28	79	10	125	38	23	4	33	1.75
566392--566762	59	6.4	59	81	8	275	36	26	3	34	1.73
566479--566572	29	3.2	28	68	19	75	35	29	3	31	1.74
566392--566764	118	3.2	116	78	10	370	36	26	3	34	1.73
566448--566762	59	5.4	58	83	5	311	35	27	2	34	1.72
578904--579700	200	4.0	200	90	1	1159	37	20	21	20	1.95
581017--581047	12	2.6	12	94	0	53	48	0	0	51	1.00
580988--581049	15	4.3	15	74	14	58	51	0	3	45	1.17
582005--582157	30	5.1	29	78	10	139	39	22	4	32	1.75
582067--582157	30	3.1	30	88	6	141	42	24	3	29	1.70
582067--582172	29	3.6	30	83	11	132	38	25	3	32	1.74
582067--582250	59	3.1	59	80	12	157	36	27	4	31	1.76
582150--582275	59	2.2	58	91	1	198	32	30	4	32	1.78
582122--582274	29	5.2	29	69	24	90	34	30	4	30	1.78
582240--582313	37	2.0	37	92	5	123	37	31	2	28	1.71
582113--582407	155	1.9	156	84	6	393	34	29	3	31	1.75
582181--582372	96	2.0	96	87	7	282	34	31	3	31	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
582319--582418	30	3.4	30	68	13	80	30	29	5	36	1.79
582277--582417	59	2.4	60	86	2	196	31	29	3	35	1.75
584003--584112	58	1.9	58	85	7	152	25	20	15	38	1.92
584863--584904	13	3.0	14	82	6	50	23	0	4	71	1.05
593080--593176	48	2.0	48	93	0	167	34	17	8	40	1.79
595483--595541	31	2.0	30	83	6	75	35	0	8	55	1.30
595657--595711	29	1.9	29	85	10	78	47	7	1	43	1.41
596381--596420	19	2.1	19	85	0	53	30	7	7	55	1.56
600897--600936	6	6.7	6	97	0	71	12	32	0	55	1.38
601650--601701	25	2.1	25	85	7	70	23	1	23	51	1.58
602134--602295	23	6.9	23	76	6	94	4	4	25	65	1.31
602126--602196	36	2.0	36	94	0	124	4	4	25	66	1.28
602143--602299	58	2.7	59	80	5	185	5	4	24	65	1.32
602172--602300	35	3.7	35	70	13	88	4	3	24	66	1.28
602134--602299	12	14.1	12	77	8	108	4	4	25	65	1.30
602273--602312	20	2.0	21	90	5	64	7	0	27	65	1.20
606597--606632	2	18.5	2	91	5	56	55	44	0	0	0.99
606632--606662	2	15.5	2	100	0	62	51	0	0	48	1.00
609349--609385	18	2.1	18	100	0	74	27	21	0	51	1.48
613988--614063	31	2.5	30	85	6	91	35	6	11	46	1.67
614011--614068	29	2.0	29	83	6	73	29	6	15	48	1.71
616839--616864	3	8.7	3	100	0	52	69	0	0	30	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
632503--632528	2	13.0	2	100	0	52	50	0	0	50	1.00
632889--633423	126	4.3	124	77	13	526	30	8	12	49	1.69
632893--633423	190	2.9	183	83	9	593	29	8	12	49	1.69
632889--633423	64	8.5	62	79	12	553	30	8	12	49	1.69
637668--637718	19	2.7	19	87	6	68	66	0	0	33	0.92
637666--637747	9	8.9	9	75	12	60	63	0	3	32	1.12
639688--639715	2	14.0	2	100	0	56	50	0	0	50	1.00
645712--645737	13	2.0	13	100	0	52	30	38	0	30	1.58
655176--655216	13	3.2	13	89	6	57	48	17	14	19	1.81
655178--655217	20	2.0	20	90	0	62	45	20	15	20	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132