genome.fa.s12.2.7.7.80.10.50.1000.128.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  128  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39603013--39603066	6	8.8	6	89	2	63	37	1	12	48	1.53
39603005--39603057	12	4.4	12	85	0	70	39	1	9	49	1.46
39606501--39606600	50	2.0	50	100	0	200	36	8	18	38	1.80
39608703--39608751	15	3.4	14	80	8	53	24	0	6	69	1.11
39615788--39615817	15	1.9	16	93	6	53	36	23	6	33	1.81
39616655--39616717	33	1.9	33	83	6	83	68	4	9	17	1.35
39621216--39621242	13	2.1	13	100	0	54	44	0	0	55	0.99
39622737--39622803	22	3.2	20	76	19	66	65	4	5	23	1.34
39622743--39622801	23	2.6	23	79	10	68	62	5	6	25	1.41
39622944--39622998	18	2.9	19	81	10	60	54	3	1	40	1.28
39622996--39623020	9	2.8	9	100	0	50	24	0	0	76	0.80
39622993--39623101	27	4.1	27	73	13	100	40	0	0	58	1.04
39623006--39623055	24	2.0	25	88	3	75	40	2	0	58	1.10
39623004--39623109	53	1.9	56	84	7	146	39	0	0	59	1.04
39623050--39623100	18	2.8	19	82	11	72	41	0	0	58	0.98
39623195--39623238	2	22.5	2	82	13	56	45	0	2	52	1.13
39632831--39632889	31	1.9	31	93	6	102	35	16	3	44	1.65
39640362--39640392	5	6.2	5	100	0	62	19	19	19	41	1.90
39640962--39641010	24	2.0	24	84	4	62	55	16	6	22	1.63
39641284--39641337	26	2.1	26	92	0	90	53	9	0	37	1.33
39656747--39656816	27	2.6	26	76	12	79	58	0	0	41	0.98
39658619--39658665	23	2.0	23	88	8	69	44	2	2	51	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39660445--39660469	2	12.5	2	100	0	50	52	0	0	48	1.00
39662306--39662340	18	1.9	17	88	11	52	25	5	5	62	1.40
39662300--39662344	17	2.7	18	81	18	53	28	4	4	62	1.34
39663588--39663638	17	3.0	16	80	13	50	35	0	5	58	1.22
39671433--39671492	27	2.3	26	80	5	68	66	1	8	23	1.28
39671694--39671732	19	2.1	19	85	0	51	58	2	2	35	1.25
39678155--39678289	53	2.6	52	87	5	175	29	16	22	31	1.96
39678887--39678942	22	2.4	24	82	11	64	25	12	26	35	1.91
39679556--39679594	16	2.5	16	88	12	55	41	0	2	56	1.13
39686487--39686532	22	2.0	23	87	4	67	41	0	2	56	1.11
39692281--39692328	19	2.5	19	96	0	87	29	12	8	50	1.69
39694172--39694199	2	14.0	2	100	0	56	50	0	0	50	1.00
39696400--39696434	16	2.2	16	90	10	54	77	0	2	20	0.90
39699644--39699710	34	2.0	34	96	0	125	38	13	11	35	1.82
39714041--39714066	11	2.4	11	100	0	52	92	7	0	0	0.39
39719208--39719282	32	2.3	32	100	0	150	29	10	18	41	1.84
39719236--39719336	32	3.4	29	74	18	75	26	11	14	46	1.80
39720876--39720960	27	3.2	27	81	3	82	47	14	11	27	1.78
39721225--39721280	27	2.1	27	83	6	69	50	0	0	50	1.00
39724167--39724212	2	23.0	2	100	0	92	50	0	50	0	1.00
39725135--39725204	16	4.4	16	80	7	70	32	0	17	50	1.46
39725135--39725204	32	2.2	32	87	5	97	32	0	17	50	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39725148--39725212	16	4.1	15	82	9	67	29	1	20	49	1.58
39725258--39725295	16	2.4	16	86	4	51	31	15	15	36	1.90
39725476--39725521	23	2.0	22	87	4	65	41	4	13	41	1.63
39739345--39739387	21	2.0	21	81	4	50	23	16	23	37	1.94
39748920--39749001	40	2.0	40	100	0	164	46	20	9	23	1.80
39750521--39750576	21	2.6	22	75	11	53	53	1	3	41	1.29
39755440--39755493	3	18.7	3	88	7	76	31	3	0	64	1.11
39755457--39755540	12	7.2	12	74	12	59	27	2	3	66	1.20
39755457--39755533	9	8.9	9	75	5	52	28	1	3	66	1.17
39756781--39756969	95	2.0	94	86	4	265	46	13	16	22	1.83
39760549--39761651	383	3.0	375	83	5	1190	32	11	16	39	1.84
39768918--39769004	7	12.7	7	70	4	52	31	13	24	31	1.94
39768952--39769004	21	2.5	21	84	0	61	30	13	24	32	1.93
39768919--39768990	26	2.7	27	82	8	85	29	15	23	31	1.95
39768919--39768992	14	5.4	14	74	6	71	29	14	24	31	1.95
39769041--39769090	21	2.5	20	83	3	55	40	2	14	44	1.56
39771771--39771814	20	2.1	21	84	16	56	63	0	4	31	1.14
39771803--39771862	31	1.9	31	82	3	75	43	6	8	41	1.61
39780191--39780273	40	2.1	40	95	0	148	51	9	2	36	1.48
39782280--39782306	12	2.2	12	100	0	54	33	14	18	33	1.92
39793508--39793537	14	2.1	15	93	6	53	63	13	6	16	1.50
39801297--39801346	16	3.2	15	77	2	55	30	2	12	56	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39822099--39822129	16	1.9	16	93	0	53	61	3	29	6	1.37
39824820--39824850	15	2.1	15	100	0	62	41	12	6	38	1.69
39829947--39830014	32	2.2	32	81	2	75	54	10	7	27	1.61
39834391--39834471	29	2.7	29	79	11	92	48	1	3	46	1.27
39840137--39840179	22	2.0	22	81	9	52	11	13	11	62	1.54
39850773--39850822	15	3.4	15	75	22	52	42	0	0	58	0.98
39850775--39850834	30	2.2	29	82	14	74	43	0	0	56	0.99
39851422--39851471	26	2.0	24	84	7	64	42	0	2	56	1.11
39859736--39859766	16	1.9	16	93	0	53	70	3	0	25	1.02
39873964--39874168	112	1.8	112	90	0	329	31	7	19	41	1.78
39880998--39881036	2	19.5	2	100	0	78	48	0	0	51	1.00
39885999--39886044	23	2.0	23	100	0	92	30	17	13	39	1.87
39888774--39888800	14	1.9	14	100	0	54	29	22	18	29	1.97
39889259--39889304	21	2.1	22	92	4	76	23	19	17	39	1.92
39889666--39889954	96	3.0	97	91	5	476	39	7	5	47	1.55
39889713--39889954	49	5.0	48	63	14	129	36	7	5	49	1.56
39889666--39889954	98	3.0	97	92	4	476	39	7	5	47	1.55
39889680--39889968	97	3.0	95	85	7	395	38	8	5	47	1.58
39893172--39893219	11	4.5	11	78	2	53	25	10	2	62	1.38
39895790--39895997	105	2.0	105	100	0	416	35	15	14	34	1.88
39897903--39897963	25	2.3	26	80	11	70	40	6	6	45	1.56
39898977--39899040	17	3.8	17	80	0	83	39	4	3	53	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39898973--39899037	34	1.9	34	90	0	103	33	4	4	56	1.40
39903355--39903387	16	2.1	16	94	0	57	63	9	9	18	1.49
39905809--39905899	30	3.1	29	81	10	105	35	27	3	34	1.73
39905812--39906336	29	18.0	28	72	13	236	36	24	3	35	1.73
39905812--39906538	59	12.4	57	78	10	412	34	24	4	35	1.76
39906196--39906389	29	6.7	29	76	13	150	31	27	6	33	1.83
39906418--39906514	30	3.3	30	73	20	87	27	27	7	37	1.83
39909739--39909768	15	1.9	16	93	6	53	36	3	0	60	1.14
39917661--39917704	22	2.0	22	86	4	61	45	0	2	52	1.13
39919039--39919078	19	2.2	18	86	4	53	30	0	2	67	1.04
39921617--39921815	100	2.0	99	89	2	301	34	9	21	34	1.85
39930641--39930677	18	2.1	18	100	0	74	37	13	10	37	1.80
39933649--39933673	11	2.3	11	100	0	50	92	0	8	0	0.40
39936435--39936473	18	2.2	18	85	0	51	43	0	2	53	1.14
39937697--39937734	2	19.0	2	100	0	76	50	50	0	0	1.00
39942828--39943026	100	2.0	99	88	2	292	35	8	22	34	1.83
39947683--39947727	5	8.2	5	81	18	54	40	0	4	55	1.20
39947675--39947727	11	4.7	11	83	4	61	39	0	3	56	1.17
39947658--39947744	17	5.2	16	80	8	77	40	1	4	54	1.29
39947683--39947744	28	2.2	28	86	11	83	40	0	4	54	1.22
39948785--39949226	30	15.0	30	67	13	197	36	25	4	33	1.77
39948793--39949225	29	14.7	29	69	12	224	36	25	4	33	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39948793--39949228	59	7.4	57	75	9	301	36	25	5	33	1.78
39952392--39952468	31	2.5	31	97	2	145	44	11	2	41	1.55
39957427--39957464	17	2.2	17	90	0	58	44	2	2	50	1.30
39959122--39959196	36	2.1	36	89	0	114	44	25	6	24	1.78
39960087--39960169	24	3.4	24	65	15	62	54	0	3	42	1.18
39961949--39961978	15	1.9	16	93	6	53	60	0	3	36	1.14
39963389--39963553	89	1.8	90	88	3	253	47	11	7	32	1.68
39971392--39971421	15	1.9	16	93	6	53	56	0	0	43	0.99
39980485--39980554	26	2.9	24	87	6	88	28	11	8	51	1.67
39980490--39980566	24	3.1	25	85	7	95	25	10	9	54	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132