genome.fa.s12.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  119  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36354998--36355123	44	2.8	44	91	1	153	49	10	8	31	1.67
36355021--36355123	44	2.3	44	98	0	197	46	10	9	33	1.71
36356989--36357048	24	2.5	24	86	2	77	48	13	15	23	1.79
36362856--36362898	22	2.0	22	85	0	59	9	13	20	55	1.66
36365858--36365948	44	2.0	44	81	10	105	40	4	5	49	1.46
36368650--36368723	31	2.4	31	83	2	85	33	6	4	55	1.45
36371278--36371312	18	2.0	18	88	5	54	37	0	5	57	1.23
36373991--36374058	27	2.5	27	82	0	82	16	22	36	25	1.94
36381576--36381613	19	2.0	19	85	10	51	60	0	0	39	0.97
36385032--36385058	14	1.9	14	100	0	54	25	0	0	74	0.83
36385028--36385060	14	2.3	15	85	15	52	24	0	0	75	0.80
36391169--36391226	13	4.5	13	80	8	64	32	5	20	41	1.75
36391179--36391234	26	2.2	26	83	0	67	42	3	17	35	1.67
36396071--36396098	14	2.0	14	100	0	56	71	0	14	14	1.15
36398882--36398916	18	2.0	18	88	5	54	74	0	5	20	1.02
36398864--36398916	23	2.3	21	76	17	52	71	0	5	22	1.06
36407249--36407279	12	2.6	12	94	0	53	51	9	0	38	1.35
36409874--36409925	27	2.0	27	84	3	70	57	0	0	42	0.98
36409892--36409928	18	2.0	19	89	5	58	51	0	0	48	1.00
36414231--36414314	27	3.1	27	61	19	66	40	15	19	25	1.90
36421826--36421885	25	2.7	21	72	18	66	21	28	10	40	1.85
36427183--36427209	12	2.2	12	100	0	54	25	0	48	25	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36430423--36430471	20	2.3	21	86	10	64	57	0	2	40	1.10
36432210--36432264	25	2.2	25	87	9	78	30	0	3	65	1.10
36432222--36432274	25	2.1	25	85	0	70	32	1	1	64	1.15
36444819--36444871	27	1.9	27	84	3	70	45	0	1	52	1.11
36446525--36446578	27	2.0	27	100	0	108	33	18	3	44	1.67
36447077--36447110	17	2.1	17	88	5	52	32	8	8	50	1.64
36449820--36449861	22	1.9	22	90	0	66	26	33	28	11	1.92
36454801--36454857	28	2.0	30	82	6	73	54	0	1	43	1.10
36458927--36458959	17	1.9	17	88	11	50	33	0	9	57	1.30
36462312--36462357	24	2.0	24	91	4	76	28	13	6	52	1.65
36466465--36466587	42	3.0	42	84	1	149	23	29	9	37	1.87
36474330--36474526	43	4.6	42	78	7	164	30	26	16	26	1.97
36474713--36474805	40	2.3	40	84	0	132	24	13	19	41	1.88
36475423--36475462	21	1.9	21	84	0	53	67	5	0	27	1.11
36475733--36475808	10	7.6	10	70	16	59	55	1	5	38	1.31
36475770--36475812	21	2.1	20	87	12	61	55	0	4	39	1.20
36475886--36475944	30	2.0	29	87	9	84	30	8	3	57	1.45
36478134--36478210	29	2.7	28	74	22	70	33	2	29	33	1.72
36478163--36478248	29	2.9	31	78	14	85	31	2	29	37	1.70
36478080--36478247	58	2.9	57	76	10	146	33	1	29	35	1.68
36480133--36480167	18	1.9	18	100	0	70	17	8	17	57	1.64
36480802--36480996	86	2.3	86	86	0	255	22	24	17	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36480639--36481196	286	2.0	286	90	0	893	20	22	20	36	1.95
36480888--36481714	200	4.1	200	94	0	1440	19	22	21	37	1.95
36493888--36494113	29	7.7	28	67	20	97	34	3	29	33	1.73
36493895--36494087	59	3.3	60	78	10	195	35	2	28	34	1.69
36493961--36494055	30	3.2	29	70	19	79	35	3	25	35	1.72
36493933--36494113	29	6.2	28	68	23	106	32	2	28	35	1.72
36494059--36494124	29	2.2	29	81	7	80	31	3	27	37	1.72
36509869--36510119	58	4.3	59	86	3	258	34	6	29	29	1.82
36509904--36510157	58	4.4	59	89	4	358	34	5	28	31	1.79
36509904--36510187	59	4.9	57	87	8	344	33	5	28	32	1.80
36509904--36510158	117	2.2	116	86	8	365	34	5	29	31	1.79
36510108--36510369	30	8.7	30	87	2	337	33	3	25	37	1.74
36510108--36510369	61	4.4	61	90	2	388	33	3	25	37	1.74
36510116--36510369	91	2.8	90	86	3	357	34	3	24	37	1.73
36510484--36510779	162	1.8	162	90	2	479	47	12	15	24	1.80
36511292--36511319	14	2.0	14	100	0	56	35	21	21	21	1.96
36511556--36511625	20	3.3	20	72	16	61	44	4	0	51	1.21
36512173--36512203	15	2.1	15	100	0	62	12	12	54	19	1.70
36512261--36512321	14	4.5	14	85	8	81	18	18	27	36	1.94
36512261--36512321	26	2.2	28	85	5	81	18	18	27	36	1.94
36512348--36512416	17	4.1	16	83	12	77	52	2	1	43	1.25
36512365--36512419	6	9.7	6	76	11	62	52	1	1	43	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36512364--36512426	11	5.5	11	83	5	81	53	1	3	41	1.26
36518249--36518286	14	2.7	15	88	8	53	0	10	5	84	0.77
36524270--36524296	6	4.5	6	100	0	54	0	14	0	85	0.61
36527137--36527179	22	2.0	22	86	8	63	62	2	0	34	1.08
36530126--36530167	21	2.0	21	90	0	66	21	9	16	52	1.72
36531221--36531374	56	2.7	57	82	5	186	41	3	2	51	1.34
36531541--36531597	16	3.6	16	75	0	51	28	26	5	40	1.77
36532321--36532376	28	2.0	28	83	13	71	55	7	7	30	1.54
36533463--36533511	16	3.2	16	75	18	52	59	6	0	34	1.22
36548909--36548946	16	2.3	17	81	9	51	55	10	0	34	1.34
36549577--36549628	21	2.6	21	79	11	56	48	0	11	40	1.40
36552712--36552939	115	2.0	116	94	0	404	21	10	17	50	1.76
36567946--36568016	34	2.1	34	97	0	133	36	12	15	35	1.86
36569273--36569314	18	2.3	18	88	8	59	30	0	4	64	1.14
36575216--36575285	30	2.4	30	85	7	90	41	4	4	50	1.42
36577427--36577469	18	2.4	18	88	7	61	53	0	0	46	1.00
36577933--36577966	9	3.8	9	84	0	50	35	8	8	47	1.66
36603965--36603989	7	3.6	7	100	0	50	0	12	28	60	1.32
36604646--36604710	31	2.1	31	91	0	103	43	6	13	36	1.70
36617291--36617357	31	2.1	32	83	8	84	37	4	11	46	1.61
36618867--36618920	26	2.1	26	80	10	67	53	0	7	38	1.29
36622683--36622733	24	2.1	24	96	0	93	23	19	9	47	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36623617--36623702	29	3.0	28	68	9	66	55	3	2	38	1.29
36623875--36623933	19	3.4	17	80	11	59	57	3	1	37	1.25
36634567--36634608	19	2.1	21	86	8	61	7	26	2	64	1.32
36639504--36639543	16	2.5	16	95	0	71	37	7	27	27	1.84
36639532--36639619	44	2.0	46	86	8	128	27	7	26	38	1.84
36641851--36641882	8	3.9	8	92	8	55	40	0	0	59	0.97
36641851--36641886	17	2.1	17	100	0	72	38	0	0	61	0.96
36641855--36641928	32	2.3	33	77	9	82	40	0	1	58	1.07
36643678--36643720	20	2.0	22	86	8	63	30	0	6	62	1.21
36644557--36644602	24	1.9	24	95	0	83	60	0	39	0	0.97
36645269--36645320	27	1.9	27	88	0	77	26	34	15	23	1.94
36645589--36645637	15	3.3	15	88	0	71	48	2	16	32	1.57
36645828--36645854	14	1.9	14	100	0	54	44	0	18	37	1.50
36646179--36646212	15	2.1	16	89	10	52	58	0	0	41	0.98
36646245--36646302	15	3.6	15	72	17	53	50	1	1	46	1.22
36663206--36663232	4	6.8	4	100	0	54	25	0	22	51	1.48
36670611--36670649	19	2.0	20	85	5	53	25	12	5	56	1.57
36670650--36670687	19	2.1	18	85	9	51	18	5	13	63	1.48
36674005--36674078	24	3.1	24	75	7	62	36	22	36	4	1.74
36674014--36674129	54	2.1	54	90	0	178	37	20	36	5	1.75
36673923--36674074	78	1.9	78	88	2	225	38	23	32	5	1.77
36673955--36674198	78	3.1	79	79	6	189	38	22	33	5	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36673936--36674198	132	2.0	132	84	1	348	38	22	33	5	1.77
36674067--36674218	78	1.9	78	82	2	189	38	22	33	5	1.77
36674284--36674326	18	2.4	18	80	0	50	39	30	23	6	1.81
36680019--36680342	69	4.7	69	92	0	513	23	32	14	29	1.94
36680361--36680388	12	2.3	12	100	0	56	35	53	0	10	1.36
36680384--36680789	66	6.0	66	78	9	262	22	32	13	31	1.93
36680418--36680805	69	5.7	69	79	6	378	22	31	14	30	1.94
36680428--36680805	138	2.8	137	80	6	419	23	31	14	31	1.94
36680933--36680993	12	5.1	12	77	0	68	24	44	8	22	1.80
36681291--36681349	2	29.5	2	96	0	109	1	49	0	49	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132