genome.fa.s12.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  106  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32264478--32264550	6	13.0	6	72	18	59	42	1	2	53	1.23
32264490--32264550	17	3.7	16	84	6	77	42	1	1	54	1.20
32264478--32264549	11	6.5	11	75	9	58	41	1	2	54	1.23
32266421--32266760	30	11.4	30	80	7	309	39	20	2	37	1.67
32266425--32266772	60	5.8	60	82	6	361	39	20	2	37	1.68
32266424--32266772	90	3.9	89	81	7	343	39	20	2	36	1.68
32266761--32266855	30	3.2	28	70	14	84	30	35	0	33	1.58
32266775--32266862	29	3.0	30	68	17	85	32	32	0	34	1.58
32266754--32266892	58	2.3	58	87	3	188	31	33	1	33	1.67
32278706--32279245	68	7.9	68	94	0	911	35	15	20	28	1.93
32278630--32279245	136	4.5	136	92	2	957	35	15	20	28	1.93
32278630--32279245	204	3.0	204	91	2	957	35	15	20	28	1.93
32279638--32279737	28	3.6	27	77	12	94	40	3	2	55	1.27
32279684--32279738	17	3.3	17	83	16	71	43	3	0	52	1.18
32281604--32281916	30	10.5	30	77	12	220	39	21	2	36	1.67
32281604--32281952	60	5.8	59	79	8	296	38	23	2	35	1.68
32281603--32281929	90	3.6	90	79	6	317	39	22	2	36	1.67
32281909--32282003	30	3.2	28	68	19	77	29	34	1	34	1.65
32281902--32282039	58	2.3	59	90	5	215	31	33	2	32	1.70
32289115--32289396	140	2.0	140	100	0	564	41	7	7	43	1.61
32293437--32293503	30	2.2	31	84	7	84	50	19	11	17	1.77
32294427--32294500	30	2.4	30	82	6	78	22	9	16	51	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32295793--32295849	2	28.5	2	96	0	105	49	0	0	50	1.00
32303999--32304285	37	7.8	37	87	0	342	36	31	18	13	1.90
32305516--32305773	29	8.8	29	70	21	182	32	3	31	32	1.73
32305516--32305773	59	4.4	59	91	1	383	32	3	31	32	1.73
32305606--32305799	30	6.6	29	70	23	111	32	2	30	35	1.69
32305611--32305799	29	6.5	29	72	19	135	32	2	30	34	1.70
32305521--32305808	118	2.4	117	84	5	384	33	3	28	34	1.73
32306959--32307038	13	6.1	13	73	1	61	35	5	3	56	1.39
32306966--32307039	26	2.9	25	75	13	78	35	5	5	54	1.47
32307766--32307821	15	4.0	13	72	22	51	41	1	0	57	1.09
32308194--32308641	200	2.2	200	93	0	763	19	24	21	34	1.96
32308682--32308835	79	2.0	77	81	7	177	25	20	27	25	1.99
32308956--32309544	76	7.8	76	90	2	848	33	17	14	33	1.91
32327157--32327820	76	8.8	76	91	1	969	32	14	17	34	1.91
32327254--32327453	37	5.4	37	70	17	171	33	13	19	34	1.91
32328135--32328583	200	2.2	200	91	0	702	35	21	23	19	1.96
32328956--32329011	15	4.0	13	72	22	51	57	0	1	41	1.09
32329365--32329450	29	3.0	28	73	20	86	34	1	31	32	1.66
32329364--32329620	59	4.4	58	84	5	322	32	3	31	33	1.74
32329365--32329620	117	2.2	118	87	4	369	32	3	30	33	1.74
32329401--32329638	29	8.2	29	69	14	114	33	3	29	33	1.74
32329577--32329679	29	3.6	29	75	11	95	33	3	25	37	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32330761--32330840	13	6.1	13	73	1	61	35	5	3	56	1.39
32330768--32330841	26	2.9	25	75	13	78	35	5	5	54	1.47
32331573--32331628	15	4.0	13	72	22	51	41	1	0	57	1.09
32331706--32331783	37	2.1	37	87	0	111	43	29	16	10	1.81
32336500--32336534	2	17.5	2	100	0	70	48	0	51	0	1.00
32336715--32336761	22	2.1	22	100	0	94	40	17	8	34	1.79
32342260--32342310	19	2.7	18	79	11	57	9	9	7	72	1.28
32343152--32343234	9	8.8	9	75	22	73	53	0	1	45	1.08
32343152--32343247	28	3.3	29	89	5	149	53	0	1	45	1.07
32343188--32343233	17	2.5	18	89	10	67	54	0	0	45	0.99
32348001--32348078	30	2.6	30	87	2	102	26	16	14	42	1.86
32350416--32350448	15	2.3	15	89	5	50	30	0	24	45	1.53
32353436--32353471	18	2.0	18	94	0	63	8	38	0	52	1.32
32358037--32358428	194	2.0	194	92	0	649	33	14	19	32	1.92
32367866--32367926	30	2.0	30	96	0	113	34	18	3	44	1.66
32376223--32376270	18	2.7	18	78	12	55	45	0	20	33	1.52
32376351--32376449	38	2.6	39	75	14	105	23	20	27	29	1.99
32381285--32381338	18	3.0	19	81	10	69	51	0	0	48	1.00
32382945--32382969	2	12.5	2	100	0	50	48	0	0	52	1.00
32388381--32388433	17	3.0	17	81	8	61	50	0	0	49	1.00
32388390--32388432	21	2.1	20	87	12	61	53	0	0	46	1.00
32388395--32388440	24	2.0	23	87	12	67	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32389633--32389687	27	2.0	27	89	0	83	16	25	34	23	1.95
32390710--32390778	6	11.5	6	87	0	84	46	0	30	23	1.53
32390707--32390778	30	2.4	30	100	0	144	47	0	29	23	1.52
32390706--32390778	24	3.0	24	87	0	101	47	0	28	23	1.52
32397287--32397331	21	2.1	21	100	0	90	22	11	13	53	1.71
32410231--32410267	18	2.2	18	85	9	51	56	2	0	40	1.13
32410905--32410932	11	2.5	11	100	0	56	32	7	0	60	1.24
32418232--32418318	34	2.6	32	85	5	111	68	2	4	24	1.19
32418362--32418403	9	4.3	10	80	14	52	71	0	0	28	0.86
32418331--32418411	19	4.2	19	73	16	60	66	4	0	28	1.12
32419090--32419145	18	3.3	17	82	7	69	32	1	1	64	1.14
32419101--32419210	9	12.6	8	70	17	60	33	2	3	60	1.29
32419162--32419208	19	2.6	17	81	18	60	36	4	4	55	1.39
32419472--32419510	20	2.0	20	89	0	60	51	10	0	38	1.36
32424374--32424468	35	2.7	35	79	9	97	43	28	4	24	1.73
32424468--32424526	27	2.2	27	87	6	84	18	1	30	49	1.58
32427841--32427879	20	2.0	20	89	0	60	33	7	25	33	1.84
32429342--32429400	28	2.1	28	90	6	93	55	6	3	33	1.43
32430770--32430864	15	6.3	15	67	9	59	31	14	18	34	1.92
32430946--32430992	23	2.0	23	84	8	60	27	17	25	29	1.97
32431063--32431198	34	4.0	34	85	1	193	35	18	13	32	1.90
32431063--32431198	67	2.0	68	88	4	204	35	18	13	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32441195--32441377	51	3.5	50	83	6	206	28	23	15	32	1.95
32447645--32447685	21	2.0	21	85	0	55	34	14	14	36	1.87
32448404--32448642	51	4.6	51	85	4	284	30	24	12	32	1.93
32450801--32450839	3	13.0	3	100	0	78	33	0	0	66	0.92
32460593--32460662	19	3.6	19	73	11	61	7	7	17	68	1.35
32460642--32460755	23	5.2	22	68	17	67	9	3	19	67	1.34
32460647--32460742	44	2.2	43	83	7	113	9	4	18	67	1.34
32460659--32460755	44	2.2	43	80	5	106	11	3	18	67	1.35
32463679--32463839	24	6.7	24	85	4	191	22	19	29	29	1.98
32465591--32465632	14	2.9	15	82	13	52	35	0	0	64	0.94
32468436--32468561	24	5.2	24	70	0	99	19	29	23	27	1.98
32468683--32468743	21	2.7	22	75	10	70	11	24	26	37	1.89
32478704--32478831	66	2.0	65	88	1	193	55	3	5	35	1.39
32480622--32480679	22	2.6	22	83	8	64	13	1	32	51	1.51
32483886--32483954	3	23.0	3	93	0	120	66	2	0	30	1.06
32483953--32483996	3	14.7	3	85	0	52	25	0	9	65	1.21
32484983--32485049	21	3.1	21	74	14	66	61	0	1	37	1.05
32489911--32490042	52	2.3	55	78	15	144	46	21	0	30	1.57
32492985--32493049	32	2.0	32	84	0	85	49	6	1	43	1.37
32494458--32494515	6	9.5	6	96	3	107	17	0	31	51	1.45
32505741--32505823	35	2.4	35	83	0	103	27	21	24	26	1.99
32506309--32506428	58	2.1	58	84	3	152	35	15	28	21	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32506321--32506441	58	2.1	58	82	3	145	36	14	26	22	1.93
32506514--32506591	30	2.7	28	79	13	77	28	16	25	29	1.97
32510533--32510596	29	2.2	28	81	10	74	45	1	3	50	1.27
32511460--32511873	221	1.9	213	85	3	558	35	6	19	38	1.77
32512244--32512270	13	2.1	13	100	0	54	62	0	0	37	0.95
32514663--32514849	52	3.6	52	91	0	302	35	24	14	25	1.94
32515390--32515430	18	2.4	17	88	12	57	31	9	0	58	1.31
32521528--32521565	2	19.0	2	100	0	76	50	0	0	50	1.00
32531077--32531131	23	2.4	22	79	11	56	52	1	0	45	1.11
32536613--32536706	43	2.2	45	86	9	133	32	2	7	57	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132