genome.fa.s12.2.7.7.80.10.50.1000.56.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  56  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15677674--15677712	20	2.0	20	89	0	60	35	15	2	46	1.60
15678742--15678846	17	6.1	17	80	1	111	53	4	0	40	1.28
15679203--15679888	208	3.3	209	84	1	840	21	21	19	37	1.94
15679957--15680077	39	3.1	39	75	9	122	26	21	29	22	1.99
15680100--15680191	41	2.2	41	88	0	130	31	17	20	30	1.96
15680443--15680618	49	3.6	49	81	2	194	13	35	19	31	1.90
15680443--15680618	98	1.8	97	82	3	228	13	35	19	31	1.90
15681541--15681586	20	2.3	20	76	0	56	2	19	0	78	0.86
15686868--15686992	29	4.2	29	75	7	108	32	12	24	29	1.93
15686892--15686992	29	3.4	29	81	6	123	35	9	22	31	1.87
15686892--15687020	29	4.4	28	78	6	114	34	9	24	31	1.87
15686891--15687020	58	2.2	59	90	1	199	34	9	24	31	1.87
15686916--15687326	30	14.0	29	73	12	252	34	4	25	35	1.76
15687093--15687231	58	2.4	60	87	6	196	30	3	28	36	1.74
15689005--15689109	17	6.1	17	80	1	111	52	5	0	40	1.32
15690765--15690888	55	2.2	55	86	1	176	25	22	30	20	1.98
15693945--15693994	21	2.4	21	87	9	68	56	4	0	40	1.18
15693945--15694005	20	3.0	21	79	11	65	55	3	1	39	1.26
15697273--15697313	19	2.1	20	86	13	59	48	2	7	41	1.44
15703600--15703626	5	5.4	5	100	0	54	18	62	0	18	1.32
15707910--15707991	25	3.2	26	79	19	93	40	0	6	53	1.26
15710682--15710716	18	1.9	18	94	0	61	54	5	34	5	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15713698--15713738	21	1.9	22	90	5	66	14	26	26	31	1.95
15714827--15714852	5	5.2	5	100	0	52	23	0	0	76	0.78
15721573--15721713	70	2.0	70	95	0	255	39	22	11	26	1.88
15722492--15722763	69	4.0	69	80	4	345	27	25	15	30	1.96
15722540--15722719	33	5.4	33	72	9	152	26	25	17	30	1.97
15745428--15745529	36	2.8	36	80	0	123	27	14	24	33	1.94
15746972--15747007	16	2.2	16	95	0	63	22	5	13	58	1.56
15750296--15750326	16	1.9	16	93	0	53	6	12	12	67	1.40
15751407--15751431	13	1.9	13	100	0	50	48	0	12	40	1.40
15754589--15754642	21	2.6	21	82	5	65	29	5	31	33	1.80
15757041--15757101	27	2.3	27	80	5	70	36	8	14	40	1.76
15758454--15758480	14	1.9	14	100	0	54	29	14	7	48	1.71
15758571--15758599	6	4.8	6	100	0	58	51	0	34	13	1.42
15758656--15758685	14	2.1	14	93	0	51	43	0	0	56	0.99
15762938--15762972	18	2.0	18	88	5	54	37	11	0	51	1.38
15763371--15763430	17	3.6	17	79	2	68	46	0	3	50	1.18
15765222--15765280	31	1.9	31	93	3	102	35	28	5	30	1.79
15765352--15765466	30	3.9	30	79	8	119	34	25	2	37	1.70
15765250--15765612	59	6.2	57	76	9	236	36	24	3	36	1.72
15765253--15765650	88	4.5	86	74	12	267	36	24	3	35	1.72
15765334--15765651	117	2.7	116	80	8	306	36	24	3	36	1.72
15765263--15765650	29	13.2	29	71	15	221	35	24	3	36	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15765324--15765650	59	5.6	58	77	8	267	35	24	3	36	1.71
15765574--15765669	29	3.3	29	82	8	108	38	26	5	30	1.78
15777678--15778343	209	3.2	209	87	0	902	35	18	22	23	1.96
15778617--15778696	17	4.7	17	79	0	88	41	0	6	52	1.27
15779347--15779391	3	15.0	3	100	0	90	66	0	0	33	0.92
15780454--15780650	30	6.6	30	69	14	97	35	25	3	36	1.73
15780588--15780980	29	13.4	29	69	17	163	34	27	5	33	1.79
15780478--15780648	89	1.9	89	80	7	195	34	25	2	36	1.71
15780577--15780915	59	5.7	59	80	5	339	34	26	5	33	1.78
15780577--15780894	118	2.7	119	82	7	382	34	26	4	33	1.78
15780577--15780957	118	3.2	119	81	8	329	34	27	4	33	1.78
15780642--15780957	59	5.4	58	79	9	243	34	27	5	33	1.79
15782583--15782632	17	2.9	17	78	3	64	12	46	0	42	1.41
15785020--15785140	23	5.2	23	85	9	129	13	23	22	40	1.89
15785020--15785139	46	2.6	47	85	7	147	13	23	22	40	1.89
15785144--15785233	23	3.9	23	77	17	87	11	24	18	45	1.82
15786051--15786110	13	4.7	13	71	19	54	35	0	1	63	1.05
15788681--15788739	30	1.9	30	82	3	73	47	6	18	27	1.74
15792268--15792511	57	4.2	58	84	5	298	21	16	12	49	1.78
15792268--15792521	86	3.0	85	84	5	307	21	16	11	50	1.76
15792268--15792511	29	8.5	29	85	4	280	21	16	12	49	1.78
15792968--15793192	36	5.8	36	75	15	207	32	5	16	44	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15793065--15793192	45	2.8	46	88	4	190	32	6	17	42	1.75
15794621--15794651	16	2.0	15	93	6	53	45	0	6	48	1.28
15794619--15794666	20	2.4	19	89	6	69	45	0	6	47	1.27
15794619--15794666	19	2.5	20	80	16	57	45	0	6	47	1.27
15796405--15796489	29	2.8	31	80	10	95	52	10	11	24	1.69
15796811--15796868	3	19.3	3	100	0	116	0	34	0	65	0.93
15797330--15797396	32	2.1	33	82	2	82	20	5	11	61	1.51
15797516--15797548	3	11.0	3	100	0	66	66	0	33	0	0.92
15801626--15801694	11	6.8	10	74	12	52	31	2	2	62	1.25
15801636--15801682	21	2.2	21	84	0	67	36	0	4	59	1.17
15803432--15803477	4	12.0	4	82	13	53	23	2	0	73	0.94
15803432--15803477	19	2.4	18	89	7	65	23	2	0	73	0.94
15803432--15803477	23	2.0	23	87	8	67	23	2	0	73	0.94
15803433--15803477	15	3.0	15	84	15	58	24	2	0	73	0.95
15806280--15806393	50	2.3	51	83	7	144	35	20	23	20	1.95
15806307--15806411	50	2.1	50	85	3	140	36	21	21	20	1.95
15806388--15806640	125	2.0	125	88	3	375	39	15	22	22	1.91
15806731--15807182	40	11.4	40	75	9	370	30	24	19	25	1.98
15806803--15807182	79	4.8	79	80	9	357	30	25	19	25	1.98
15806736--15807182	119	3.8	117	79	8	397	30	24	19	25	1.98
15806730--15807187	198	2.3	198	81	6	525	30	24	18	25	1.98
15807841--15807890	4	13.0	4	81	12	52	22	4	0	74	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15807842--15807890	19	2.3	20	83	16	64	22	4	0	73	1.00
15808927--15809012	28	3.0	28	81	5	91	37	26	1	34	1.64
15808965--15809022	28	2.1	27	81	9	64	36	20	3	39	1.70
15816908--15817160	130	1.9	130	91	0	416	39	17	17	26	1.91
15817175--15817509	40	8.5	39	74	8	248	29	25	19	25	1.98
15817181--15817509	79	4.2	79	76	5	306	29	24	19	26	1.98
15817195--15817490	158	1.9	158	80	4	355	29	23	21	26	1.99
15818165--15818214	4	13.0	4	83	8	68	24	4	0	72	1.02
15818165--15818214	19	2.6	20	90	6	77	24	4	0	72	1.02
15818213--15818245	14	2.3	15	89	5	50	75	3	0	21	0.93
15818214--15818257	18	2.2	20	88	11	65	72	4	0	22	1.02
15818213--15818257	21	2.1	22	87	4	65	71	4	0	24	1.05
15819243--15819428	30	6.2	30	79	9	182	36	24	5	32	1.80
15819598--15819651	18	2.9	19	75	25	62	24	1	7	66	1.27
15822165--15822200	18	2.0	18	94	0	63	27	8	33	30	1.86
15829339--15829372	18	1.9	17	88	5	50	70	0	0	29	0.87
15833714--15833768	23	2.4	23	90	0	83	25	21	23	29	1.99
15842628--15842668	17	2.4	17	87	4	55	19	26	2	51	1.59
15850242--15850291	20	2.5	20	80	9	57	46	2	16	36	1.58
15862532--15863367	200	4.2	200	91	0	1296	36	19	22	22	1.95
15863722--15863760	17	2.2	18	90	4	62	48	0	0	51	1.00
15864694--15864728	13	2.8	12	87	8	52	80	2	5	11	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15865145--15865208	32	2.0	33	84	9	87	21	12	4	60	1.50
15865480--15865825	59	5.9	58	85	5	416	35	28	2	34	1.69
15865658--15865751	29	3.2	29	64	21	70	38	27	0	34	1.57
15877134--15877176	6	6.8	6	79	10	50	23	0	0	76	0.78
15877132--15877181	20	2.5	19	87	9	73	24	2	0	74	0.93
15877134--15877190	26	2.2	26	80	0	60	22	3	0	73	0.98
15880982--15881039	3	19.3	3	85	0	62	31	5	5	58	1.42
15880961--15881038	33	2.4	33	84	4	95	30	6	6	56	1.50
15884313--15884368	16	3.4	16	73	11	51	25	0	10	64	1.26
15884888--15884939	15	3.5	16	80	12	58	76	0	13	9	1.01

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132