genome.fa.s12.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  36  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9658369--9658411	18	2.4	18	84	0	50	46	6	0	46	1.30
9665083--9665107	4	6.2	4	100	0	50	48	28	0	24	1.52
9666238--9666306	22	3.1	22	74	15	70	72	0	1	26	0.93
9666262--9666307	10	4.6	10	82	12	51	67	0	2	30	1.03
9666394--9666450	19	2.9	19	78	14	55	61	1	8	28	1.36
9666407--9666459	19	2.8	19	77	11	63	66	0	9	24	1.21
9670312--9670528	43	5.1	43	77	5	197	24	25	15	34	1.95
9670597--9670629	15	2.2	15	94	0	57	48	27	0	24	1.51
9675763--9675821	20	3.0	20	85	11	77	22	0	27	50	1.49
9676013--9676086	25	2.9	26	80	11	73	37	0	4	58	1.17
9679755--9679844	31	2.9	31	76	15	89	24	13	1	61	1.39
9680013--9680588	223	2.6	220	81	8	647	36	9	10	43	1.71
9680492--9680693	108	1.9	109	87	6	304	31	11	15	41	1.83
9688254--9688320	25	2.7	25	73	11	66	20	4	4	70	1.23
9688390--9688497	4	26.0	4	69	20	62	24	0	3	71	1.08
9688390--9688495	16	6.6	16	69	21	71	24	0	3	70	1.09
9688390--9688489	26	3.8	24	77	15	83	24	1	4	71	1.10
9688634--9688685	17	3.4	17	72	25	51	30	3	7	57	1.45
9699473--9699547	33	2.3	33	95	0	132	28	18	17	36	1.94
9703493--9703537	22	2.0	22	83	8	56	35	4	20	40	1.72
9706701--9706838	70	2.0	70	86	6	194	34	13	12	40	1.81
9710625--9710685	31	2.0	31	84	12	81	45	11	11	31	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9717449--9717488	18	2.1	20	90	9	66	72	10	0	17	1.11
9728613--9728651	17	2.2	18	86	9	53	76	0	0	23	0.78
9731279--9731328	22	2.3	22	82	6	66	30	18	18	34	1.94
9733015--9733065	24	2.1	24	85	0	66	50	7	15	25	1.71
9734448--9734478	12	2.5	13	94	5	55	64	0	19	16	1.29
9737508--9737544	6	6.5	6	93	6	60	83	0	16	0	0.64
9737509--9737544	11	3.3	11	85	14	56	83	0	16	0	0.65
9740526--9740606	40	2.0	40	97	2	155	50	12	17	19	1.77
9741194--9741243	25	1.9	27	84	8	68	46	0	2	52	1.12
9752541--9752590	22	2.3	21	82	3	64	64	12	0	24	1.27
9753738--9753782	22	2.0	23	83	16	58	68	4	6	20	1.29
9766550--9766603	21	2.6	21	88	5	74	27	9	27	35	1.87
9769771--9769812	14	3.2	13	80	9	50	30	4	2	61	1.29
9772132--9772175	20	2.2	20	84	8	54	20	6	4	68	1.31
9775029--9775055	5	5.4	5	100	0	54	37	62	0	0	0.95
9775054--9775078	5	5.0	5	100	0	50	0	60	0	40	0.97
9782005--9782034	12	2.5	12	94	0	51	0	26	50	23	1.50
9782372--9782406	17	2.0	18	88	5	54	20	0	28	51	1.47
9796152--9796225	8	8.2	9	71	23	50	40	0	1	58	1.07
9796158--9796230	27	2.7	28	78	18	82	41	0	1	57	1.07
9796102--9796239	20	6.8	20	70	18	72	35	1	3	59	1.24
9797745--9797782	20	1.9	20	89	10	60	52	2	2	42	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9797727--9797773	16	2.7	18	74	16	53	55	4	0	40	1.19
9801626--9801665	9	4.4	9	83	0	53	55	5	2	37	1.35
9801626--9801665	18	2.2	18	95	0	71	55	5	2	37	1.35
9801713--9801777	19	3.3	19	87	8	87	55	3	0	41	1.15
9801723--9801780	27	2.1	27	84	12	75	53	1	0	44	1.10
9803200--9803259	25	2.3	27	80	5	70	46	3	0	50	1.18
9806080--9806251	52	3.3	52	90	0	263	27	13	22	36	1.92
9810180--9811993	604	3.0	604	96	0	3362	36	8	17	37	1.80
9814005--9814190	52	3.6	52	86	1	257	25	13	23	37	1.92
9816551--9816635	42	2.0	42	90	0	134	34	4	11	49	1.60
9816553--9816624	21	3.4	22	70	22	64	36	4	12	47	1.61
9816576--9816635	21	2.8	20	71	24	52	35	3	8	53	1.48
9819162--9819201	2	20.0	2	100	0	80	50	0	0	50	1.00
9820426--9820467	22	1.9	22	95	0	75	21	14	19	45	1.85
9827087--9827209	30	4.1	30	73	10	108	36	20	4	39	1.72
9827096--9827219	60	2.1	60	83	6	153	33	20	4	42	1.70
9827103--9827222	30	4.0	29	78	6	116	34	20	4	40	1.72
9832285--9832314	11	2.9	10	90	9	51	83	0	16	0	0.65
9832633--9832847	112	1.9	115	88	2	328	31	21	11	36	1.88
9833243--9833647	49	8.2	49	71	8	226	36	15	27	21	1.93
9833244--9833652	98	4.1	98	75	5	345	36	14	27	21	1.93
9833845--9834162	77	4.1	78	89	1	487	33	24	16	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9833845--9834162	155	2.1	155	91	1	512	33	24	16	24	1.96
9834112--9834340	46	5.1	46	83	4	254	34	24	16	24	1.95
9834112--9834340	92	2.5	90	84	7	286	34	24	16	24	1.95
9836008--9836121	60	1.9	60	83	3	149	34	21	3	41	1.70
9839300--9839358	28	2.1	27	84	3	73	35	0	1	62	1.05
9842944--9843024	10	8.8	9	75	17	60	28	3	2	65	1.22
9842951--9843032	28	2.9	28	82	10	89	30	2	2	64	1.19
9842950--9843032	38	2.2	39	81	12	93	31	2	2	63	1.20
9853256--9853280	12	2.1	12	100	0	50	48	8	0	44	1.32
9859290--9859408	2	64.5	2	68	18	53	60	0	1	36	1.13
9859265--9859321	25	2.2	25	81	9	62	57	0	3	38	1.16
9859274--9859412	16	8.0	17	72	15	90	62	0	2	34	1.12
9859288--9859411	34	3.6	35	74	15	107	62	0	1	35	1.11
9859314--9859408	25	4.0	25	75	15	85	62	1	2	34	1.14
9859994--9860051	23	2.4	24	80	16	66	44	0	1	53	1.10
9860053--9860097	21	2.1	22	83	4	56	31	6	0	62	1.21
9860991--9861032	18	2.3	18	87	0	57	71	7	11	9	1.31
9861026--9861060	11	3.3	11	88	8	54	48	0	51	0	1.00
9861026--9861067	21	2.0	21	90	0	66	42	0	57	0	0.99
9861896--9861937	10	4.3	10	85	14	52	35	0	14	50	1.43
9872434--9872522	21	4.1	21	84	5	90	53	10	23	12	1.68
9872434--9872502	21	3.3	21	87	2	95	55	8	24	11	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9877928--9877969	13	3.1	14	83	10	61	30	0	0	69	0.89
9877922--9877959	20	1.9	20	89	10	60	31	0	0	68	0.90
9882116--9882144	12	2.4	12	100	0	58	31	10	6	51	1.62
9885949--9886078	40	3.2	39	75	10	111	37	17	24	20	1.93
9886061--9886104	21	2.1	21	91	0	70	20	20	31	27	1.97
9886082--9886206	41	3.0	40	81	6	126	27	19	31	22	1.98
9887674--9887706	11	2.8	12	95	4	59	36	0	0	63	0.95
9887686--9887724	16	2.4	17	91	4	62	41	0	2	56	1.13
9888272--9888317	7	6.6	7	79	16	51	69	2	0	28	1.00
9888278--9888318	11	3.9	11	78	9	50	70	2	0	26	0.99
9894632--9895303	78	8.6	77	82	2	736	24	29	19	26	1.98
9894651--9895243	39	15.2	39	68	11	241	24	29	19	26	1.99
9895947--9896007	17	3.5	17	81	2	68	39	0	3	57	1.15
9895956--9895988	11	2.8	12	95	4	59	36	0	0	63	0.95
9895950--9896007	12	5.0	12	75	14	59	37	0	3	58	1.15
9896083--9896377	148	2.0	147	95	0	536	33	37	10	17	1.85
9896709--9896738	15	2.0	15	93	0	51	63	6	0	30	1.20
9897702--9897926	30	7.5	30	83	3	267	36	22	2	39	1.66
9897704--9897918	59	3.6	57	84	8	243	37	22	1	38	1.65
9897703--9897918	89	2.4	89	85	3	290	37	22	1	37	1.65
9902071--9902126	8	6.8	8	78	8	58	33	0	5	60	1.19
9908211--9908480	43	6.3	43	79	2	256	26	18	27	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9908878--9908968	45	2.0	45	95	0	164	45	19	10	24	1.83
9909663--9909722	17	3.6	17	81	4	86	50	0	30	20	1.49
9909657--9909722	33	2.0	33	96	0	123	50	0	28	21	1.49
9911366--9911407	19	2.2	19	84	16	52	40	4	2	52	1.35
9912012--9912049	3	12.7	3	100	0	76	31	0	0	68	0.90
9915930--9915988	22	2.6	22	80	17	68	61	1	3	33	1.23
9915940--9916013	24	3.0	24	69	21	64	63	1	1	33	1.11
9916769--9916814	6	7.7	6	100	0	92	17	0	67	15	1.24
9916850--9916898	18	2.8	17	73	11	53	53	6	0	40	1.26
9917719--9917774	28	2.0	29	85	3	78	26	7	7	58	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132