genome.fa.s12.2.7.7.80.10.50.1000.123.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  123  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37700143--37700181	21	1.9	19	85	10	51	28	7	0	64	1.21
37704481--37704517	16	2.2	17	90	4	58	62	2	0	35	1.10
37710526--37710785	59	4.4	59	84	2	317	33	5	29	31	1.79
37710623--37710782	29	5.5	29	72	19	127	34	3	29	33	1.73
37710632--37710786	30	5.2	29	68	25	101	32	3	30	34	1.74
37711416--37711537	6	21.0	6	71	12	85	50	1	2	45	1.24
37711452--37711537	41	2.1	41	91	0	136	54	0	3	41	1.17
37711422--37711502	17	4.7	17	85	7	101	51	2	1	44	1.22
37711493--37711537	17	2.6	18	85	3	65	53	0	4	42	1.21
37711469--37711561	24	3.7	24	75	19	82	53	1	3	41	1.24
37714907--37715033	44	2.8	45	84	7	161	30	21	22	25	1.98
37716662--37716880	59	3.7	58	87	4	280	36	5	27	30	1.78
37716669--37716829	30	5.5	28	66	17	85	37	4	25	32	1.76
37716722--37716878	30	5.3	29	67	27	82	38	4	26	30	1.76
37716677--37716829	29	5.2	29	66	17	82	37	4	25	32	1.76
37716662--37716919	59	4.4	60	81	6	262	36	4	27	31	1.78
37716894--37717071	30	5.9	30	86	3	223	32	5	25	36	1.78
37716894--37717071	61	2.9	61	85	4	227	32	5	25	36	1.78
37716894--37717071	91	2.0	91	87	2	259	32	5	25	36	1.78
37718661--37718702	20	2.2	20	95	4	77	21	16	45	16	1.86
37718883--37718951	17	4.1	16	80	12	68	50	2	2	43	1.32
37718900--37718954	6	9.7	6	76	11	53	50	1	3	43	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37718899--37718961	11	5.5	11	79	5	72	52	1	4	41	1.32
37719410--37719444	18	1.9	18	94	0	61	28	17	14	40	1.88
37720585--37720626	17	2.4	18	80	4	50	54	7	0	38	1.28
37726229--37726319	44	2.1	44	89	4	139	26	24	4	45	1.72
37731894--37731924	13	2.5	13	94	5	55	41	12	0	45	1.42
37732898--37732970	20	3.7	20	79	17	80	56	5	0	38	1.23
37738104--37738170	10	7.6	9	71	20	52	28	0	2	68	1.04
37738103--37738156	18	2.9	18	76	15	56	31	0	3	64	1.11
37738114--37738197	24	3.4	25	76	14	70	28	1	3	66	1.15
37738131--37738192	22	2.7	22	85	5	70	25	1	1	70	1.05
37749458--37749490	4	8.2	4	93	0	57	27	21	48	3	1.64
37763463--37763505	22	2.0	22	90	0	68	6	9	23	60	1.51
37763886--37763950	20	3.4	19	72	12	53	35	4	3	56	1.35
37763924--37763972	18	2.7	19	81	15	59	32	2	6	59	1.34
37764077--37764109	11	2.8	12	86	13	50	36	0	0	63	0.95
37764004--37764109	51	2.0	53	80	12	121	38	1	0	59	1.08
37767909--37767939	13	2.4	13	100	0	62	41	6	0	51	1.27
37769775--37769828	26	2.1	26	96	0	99	46	20	14	18	1.84
37779886--37779961	29	2.6	29	83	12	84	46	1	0	52	1.08
37779857--37780012	81	1.9	81	81	3	188	46	1	0	51	1.08
37788848--37788895	22	2.2	21	81	7	51	62	4	6	27	1.38
37789028--37789080	26	2.0	26	85	7	72	58	1	5	33	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37789174--37789221	19	2.6	18	75	18	53	47	2	6	43	1.40
37789881--37789946	31	2.1	31	97	0	123	27	25	13	33	1.94
37789958--37789990	5	6.6	5	100	0	66	0	21	18	60	1.36
37798335--37798386	27	1.9	27	100	0	104	46	0	1	51	1.12
37798422--37798467	14	3.4	13	82	11	56	69	4	13	13	1.33
37799294--37799338	23	1.9	23	82	13	56	48	2	2	46	1.26
37800311--37800416	46	2.3	45	82	9	142	55	0	4	38	1.27
37800654--37800687	18	1.9	18	88	5	52	55	5	2	35	1.39
37801822--37801866	23	1.9	24	86	13	67	48	0	2	48	1.13
37803172--37803205	18	1.9	18	88	5	52	55	5	2	35	1.39
37804769--37804826	30	1.9	30	92	0	98	34	0	6	58	1.25
37808782--37808815	16	2.0	18	88	11	54	41	0	0	58	0.98
37819447--37819494	10	4.6	10	82	7	51	70	0	2	27	0.98
37820132--37820178	3	15.7	3	100	0	94	65	0	0	34	0.93
37833465--37833595	59	2.3	58	85	7	180	24	12	10	52	1.70
37833465--37833595	58	2.3	58	87	7	189	24	12	10	52	1.70
37833465--37833624	59	2.7	59	83	7	168	25	11	10	51	1.70
37833779--37833968	31	6.3	31	70	18	141	44	11	18	25	1.83
37834067--37834135	23	3.0	24	85	8	106	43	10	18	27	1.82
37839049--37839094	23	1.9	25	83	16	62	36	2	4	56	1.31
37841763--37842312	270	2.0	270	96	1	1005	40	4	9	46	1.56
37845151--37845213	31	2.0	31	87	6	92	34	14	9	41	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37855325--37855350	6	4.3	6	100	0	52	84	0	15	0	0.62
37869121--37869159	3	13.0	3	100	0	78	0	33	0	66	0.92
37872370--37872397	14	2.0	14	100	0	56	42	0	0	57	0.99
37887757--37887787	14	2.3	13	89	10	53	77	0	0	22	0.77
37887760--37887786	14	1.9	14	100	0	54	74	0	0	25	0.83
37890965--37891178	23	9.5	23	71	14	133	42	21	24	12	1.87
37891019--37891093	39	1.9	39	88	0	114	45	21	21	12	1.84
37895552--37895592	18	2.3	19	83	8	50	14	4	4	75	1.14
37903238--37903276	6	6.5	6	96	0	69	53	0	46	0	1.00
37903653--37903705	26	2.0	26	82	7	63	62	1	0	35	1.06
37915575--37915605	3	10.3	3	100	0	62	32	0	35	32	1.58
37921125--37921382	131	2.0	131	84	1	338	36	17	17	27	1.93
37923611--37923648	3	12.7	3	100	0	76	65	0	0	34	0.93
37928884--37928926	21	2.0	21	82	8	52	23	18	27	30	1.98
37936448--37936509	31	2.0	31	96	3	117	41	22	9	25	1.84
37936600--37936671	30	2.4	31	86	6	94	47	16	13	22	1.82
37937974--37938044	30	2.3	31	83	7	83	21	12	18	47	1.81
37942529--37942562	17	1.9	18	88	5	52	70	8	0	20	1.13
37959631--37959700	35	2.0	35	94	2	124	47	20	1	31	1.59
37966268--37966301	18	1.9	17	94	5	59	55	0	0	44	0.99
37966901--37966952	16	3.2	16	83	10	70	32	1	15	50	1.55
37985079--37985112	14	2.4	14	85	0	50	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37986340--37986374	6	5.7	6	86	6	52	65	14	2	17	1.38
37989366--37989404	19	2.1	19	85	0	51	20	0	10	69	1.17
37990097--37990151	24	2.4	23	88	8	78	45	0	0	54	0.99
38001904--38001953	26	1.9	26	91	0	82	54	8	12	26	1.64
38010432--38010777	191	1.8	192	86	3	509	38	15	17	28	1.90
38013094--38013141	20	2.4	20	89	0	69	35	2	8	54	1.42
38013094--38013149	20	2.8	20	83	0	58	35	1	7	55	1.38
38013174--38013312	20	6.9	19	67	17	59	41	13	5	38	1.69
38013385--38013463	20	4.0	20	73	23	69	37	7	11	43	1.69
38013351--38013448	40	2.5	39	83	6	117	36	8	11	43	1.70
38019292--38019379	43	2.0	43	95	0	158	55	9	9	26	1.61
38023121--38023240	53	2.2	53	95	4	215	49	6	3	40	1.46
38023210--38023266	30	1.9	29	86	10	80	49	1	1	47	1.22
38024504--38024583	11	7.4	11	70	2	54	16	5	13	65	1.44
38024508--38024594	22	3.9	22	65	14	52	16	4	14	64	1.45
38030288--38030379	15	6.2	15	71	13	57	51	1	0	47	1.07
38030283--38030442	26	5.8	26	69	17	72	47	2	0	49	1.19
38030278--38030425	58	2.5	57	89	6	217	47	2	0	50	1.12
38041206--38041277	33	2.1	34	84	7	92	61	6	0	31	1.23
38051805--38051843	6	6.5	6	87	0	51	23	30	0	46	1.53
38053709--38053792	42	2.0	42	90	4	134	47	22	0	29	1.52
38059582--38059621	6	6.7	6	85	8	55	45	0	55	0	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38065514--38065559	16	3.0	15	87	6	58	54	0	2	43	1.12
38068282--38068322	18	2.3	18	82	0	55	58	2	0	39	1.11
38070701--38070733	14	2.3	15	94	5	59	69	0	0	30	0.88
38070791--38070840	22	2.2	23	78	3	57	54	6	2	38	1.37
38071928--38071996	31	2.2	31	89	0	102	46	10	8	34	1.69
38080349--38080392	22	2.0	23	90	4	72	25	9	0	65	1.21
38080346--38080398	23	2.3	24	80	9	74	30	7	0	62	1.23
38088255--38088290	4	9.0	4	93	0	63	50	22	0	27	1.50
38090390--38090446	10	6.1	9	75	22	55	57	1	1	38	1.19
38090390--38090446	20	3.1	19	79	18	66	57	1	1	38	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132