genome.fa.s12.2.7.7.80.10.50.1000.39.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  39  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10473881--10473935	11	4.9	11	82	4	65	58	1	0	40	1.09
10473857--10473948	17	5.5	17	85	1	114	56	4	0	39	1.19
10479306--10479357	13	4.0	13	87	0	59	34	5	23	36	1.79
10483627--10483746	24	5.0	24	80	4	118	40	15	23	20	1.91
10483627--10483746	48	2.5	48	83	2	152	40	15	23	20	1.91
10488162--10488220	31	1.9	31	86	6	84	37	0	0	62	0.95
10491433--10491463	15	2.1	15	93	0	53	38	6	35	19	1.77
10495008--10495076	34	2.0	34	82	0	84	8	7	21	62	1.48
10506851--10506897	16	2.8	17	87	6	60	59	14	8	17	1.59
10507833--10507877	2	22.5	2	100	0	90	48	0	0	51	1.00
10513299--10513407	45	2.4	45	84	6	132	20	17	16	45	1.85
10518246--10518270	1	25.0	1	100	0	50	0	100	0	0	0.00
10519949--10520010	29	2.1	31	81	6	74	40	19	9	30	1.84
10521139--10521274	65	2.1	65	90	4	211	49	9	11	29	1.71
10529049--10529126	34	2.3	34	93	0	129	21	15	20	42	1.89
10529083--10529207	58	2.2	56	87	4	171	26	12	16	44	1.83
10530872--10530899	6	4.7	6	100	0	56	14	67	0	17	1.22
10532025--10532061	18	2.1	18	89	0	56	27	8	10	54	1.63
10532445--10532536	45	2.0	46	97	2	177	38	13	15	33	1.86
10532742--10532802	28	2.2	27	85	8	79	47	3	0	49	1.18
10534023--10534162	59	2.3	60	80	8	169	27	10	8	53	1.64
10534391--10534430	21	1.9	21	90	10	64	27	17	20	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10534532--10534566	6	5.8	6	86	0	52	0	51	0	48	1.00
10535359--10535389	3	10.7	3	93	6	55	0	29	0	70	0.87
10535831--10535947	31	3.8	31	74	8	98	47	11	16	25	1.79
10543570--10543626	18	3.1	18	72	18	53	61	19	0	19	1.35
10545776--10545860	30	2.8	30	83	0	116	29	20	5	44	1.74
10555061--10555093	9	3.7	9	95	0	57	66	6	27	0	1.15
10559475--10559499	13	1.9	13	100	0	50	56	8	8	28	1.57
10561518--10561569	24	2.2	24	89	0	77	30	23	15	30	1.95
10562075--10562170	39	2.4	39	82	5	113	31	31	11	26	1.91
10562153--10562704	46	12.1	46	86	1	713	32	24	17	25	1.96
10562153--10562705	137	4.1	137	85	4	724	32	24	17	25	1.96
10564563--10564625	29	2.2	28	81	13	74	23	9	1	65	1.31
10565069--10565138	33	2.1	33	91	0	113	30	15	8	45	1.76
10565986--10566011	11	2.4	11	100	0	52	7	7	23	61	1.49
10575421--10575469	22	2.2	21	85	7	62	24	4	16	55	1.59
10575648--10575818	91	1.8	95	83	7	235	21	5	7	66	1.37
10575770--10575903	4	32.5	4	69	20	55	20	3	5	70	1.22
10575828--10575903	19	4.2	18	72	20	61	21	2	3	72	1.13
10575818--10575903	45	1.9	45	83	9	113	19	3	4	72	1.18
10575845--10575897	19	2.8	19	81	10	65	18	1	5	73	1.12
10575843--10575929	41	2.2	39	83	8	113	22	2	3	71	1.13
10584820--10585273	49	9.3	48	75	8	353	39	20	24	16	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10584790--10585279	98	5.0	98	81	3	486	39	19	24	16	1.92
10584792--10585219	147	2.9	148	76	7	433	39	19	24	16	1.91
10585140--10585299	49	3.3	48	72	4	142	41	17	23	17	1.89
10586109--10586293	12	14.5	12	67	21	51	21	4	4	69	1.25
10586227--10586299	4	18.2	4	79	8	69	21	2	2	72	1.10
10586225--10586329	41	2.6	40	81	10	117	22	3	1	71	1.12
10586367--10586407	21	2.0	21	85	9	57	26	7	4	60	1.43
10588264--10588317	26	2.1	26	89	0	81	29	24	20	25	1.99
10588307--10588403	37	2.6	37	85	0	131	29	15	25	28	1.96
10591724--10591754	16	1.9	16	93	0	53	61	0	16	22	1.34
10592583--10592681	37	2.7	37	83	0	135	30	14	25	30	1.94
10593766--10593804	17	2.3	17	90	0	60	53	15	15	15	1.73
10593773--10593812	17	2.4	17	95	0	71	52	12	20	15	1.74
10597038--10597122	37	2.3	37	80	11	102	27	22	25	24	2.00
10599902--10600093	96	2.0	96	79	6	210	36	10	21	31	1.87
10600500--10600724	30	7.6	28	75	11	123	36	3	24	35	1.73
10600386--10600664	59	4.8	57	75	10	219	36	5	24	34	1.78
10600559--10600722	29	5.6	29	78	11	154	37	2	23	36	1.68
10600559--10600734	59	3.0	58	84	7	203	36	2	24	36	1.68
10601663--10601746	3	28.0	3	71	9	55	34	2	4	58	1.32
10602447--10602552	17	6.1	17	81	5	106	50	3	0	44	1.26
10602447--10602537	6	15.7	6	72	15	66	51	3	1	43	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10622646--10622968	158	2.0	158	87	1	459	21	23	24	29	1.99
10624836--10624899	28	2.3	29	81	13	80	20	14	4	60	1.51
10630278--10630313	19	1.9	18	88	5	54	5	25	0	69	1.10
10636913--10636956	18	2.5	18	82	13	56	2	20	0	77	0.88
10647660--10647699	13	3.2	13	78	7	55	27	5	5	62	1.37
10648500--10648533	6	5.7	6	100	0	68	52	0	0	47	1.00
10649045--10649084	20	2.0	20	100	0	80	40	20	15	25	1.90
10652233--10652285	23	2.3	23	84	12	65	13	15	11	60	1.59
10654342--10654381	15	2.7	15	96	0	71	27	5	12	55	1.58
10655289--10655332	23	1.9	23	85	0	61	20	15	6	56	1.62
10658735--10658763	14	2.1	14	100	0	58	13	6	20	58	1.58
10660237--10660294	30	1.9	30	89	0	89	41	13	20	24	1.89
10661957--10661996	21	1.9	20	85	10	53	20	2	5	72	1.15
10673308--10673389	43	1.9	43	89	0	128	32	23	15	28	1.95
10673316--10673424	43	2.5	42	81	7	121	32	26	14	26	1.95
10674427--10674455	15	2.0	15	93	6	51	34	10	6	48	1.64
10677370--10677548	41	4.4	41	85	4	229	14	26	20	38	1.91
10684345--10684531	59	3.2	59	85	3	241	49	10	14	25	1.76
10684425--10684521	31	3.2	30	74	14	101	49	7	15	27	1.71
10684420--10684509	28	3.1	28	74	14	101	54	5	14	25	1.62
10685262--10685313	15	3.5	15	74	10	52	65	0	1	32	1.04
10685542--10685607	23	2.7	23	71	19	55	34	0	4	60	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10685593--10685658	28	2.4	28	92	5	109	45	3	1	50	1.26
10691608--10691642	16	2.2	16	90	10	54	28	17	2	51	1.59
10708877--10708915	17	2.2	17	90	4	60	0	20	0	79	0.73
10708869--10708902	9	3.8	9	88	0	50	0	20	0	79	0.73
10708876--10708915	15	2.5	16	88	8	55	0	22	0	77	0.77
10709475--10709532	17	3.4	17	76	11	64	55	10	18	15	1.68
10713925--10714112	52	3.6	52	80	6	184	32	20	15	31	1.94
10721154--10721333	52	3.4	52	83	4	218	33	21	14	30	1.93
10727748--10727794	16	2.8	17	77	3	51	53	8	21	17	1.70
10728204--10728249	12	3.8	12	81	16	51	0	30	0	69	0.89
10728208--10728248	15	2.7	15	92	3	64	0	29	0	70	0.87
10736128--10736566	52	8.3	52	87	4	526	38	22	13	25	1.91
10739132--10739409	40	7.0	40	85	1	335	25	26	18	29	1.98
10739145--10739412	119	2.3	119	85	2	342	25	25	18	30	1.98
10746266--10746335	33	2.1	33	94	0	122	11	11	14	62	1.54
10748465--10748521	30	1.9	30	92	0	96	31	3	12	52	1.55
10748468--10748532	30	2.2	30	86	2	87	30	7	10	50	1.65
10749690--10749743	20	2.7	20	88	5	74	25	7	35	31	1.84
10749990--10750051	30	2.0	33	87	9	94	50	1	0	48	1.10
10756105--10756135	10	3.1	10	100	0	62	41	0	29	29	1.56
10760883--10761173	52	5.6	52	88	0	413	27	14	22	35	1.93
10761936--10761987	21	2.5	21	87	12	72	28	13	28	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10787940--10787991	15	3.2	15	73	19	50	42	3	1	51	1.31
10788024--10788060	16	2.3	16	86	13	58	40	0	0	59	0.97
10788748--10788788	18	2.2	18	86	4	55	68	7	7	17	1.36
10802712--10802812	25	4.0	25	79	5	96	32	22	18	25	1.97
10807500--10807621	36	3.4	35	77	4	127	38	18	16	27	1.91
10807468--10807661	72	2.7	72	86	1	255	38	19	15	26	1.92
10810415--10810459	20	2.2	20	84	7	56	51	17	13	17	1.77
10828584--10828631	20	2.5	20	80	13	55	47	14	4	33	1.63
10830260--10830324	3	21.7	3	100	0	130	66	0	0	33	0.92
10830695--10830740	23	2.0	23	91	0	74	36	2	4	56	1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132