genome.fa.s12.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  11  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3072453--3072481	2	14.5	2	100	0	58	51	0	0	48	1.00
3073116--3073141	11	2.4	11	100	0	52	30	11	23	34	1.90
3080888--3080990	33	3.1	33	94	2	163	25	24	24	26	2.00
3080953--3081092	51	2.7	51	88	0	217	26	22	23	27	1.99
3080900--3081093	84	2.3	83	77	5	194	25	22	24	27	2.00
3081214--3081323	48	2.2	49	80	4	123	30	26	20	22	1.98
3081175--3081420	81	3.0	81	82	4	278	32	26	19	21	1.97
3081250--3081329	33	2.4	33	78	0	97	30	27	20	22	1.98
3081214--3081329	15	7.1	15	71	14	79	31	26	19	21	1.97
3081298--3081338	18	2.3	18	86	0	55	31	29	14	24	1.95
3081319--3081406	33	2.7	33	80	5	97	36	23	19	20	1.95
3081220--3081420	84	2.5	82	80	6	228	33	25	19	20	1.96
3081332--3081597	33	8.1	33	72	1	165	36	25	15	21	1.94
3081394--3081608	99	2.2	99	76	4	209	36	26	15	22	1.93
3083441--3083498	19	3.1	19	76	14	57	37	1	0	60	1.07
3083457--3083507	25	2.0	25	81	7	59	39	1	0	58	1.09
3084016--3084101	33	2.6	33	84	0	109	34	27	17	19	1.95
3084067--3084200	51	2.6	51	83	0	151	31	23	20	23	1.98
3084208--3084293	33	2.6	33	79	3	84	37	27	15	19	1.92
3084232--3084305	33	2.2	33	80	0	85	28	27	20	24	1.99
3084259--3084407	51	2.9	50	82	2	172	30	22	20	26	1.98
3083990--3084387	192	2.1	192	91	1	672	33	25	18	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3084507--3084863	33	10.8	33	72	4	182	35	26	15	22	1.95
3084475--3084851	99	3.8	98	79	2	362	34	25	16	23	1.95
3084784--3084830	15	2.9	15	80	17	58	44	27	10	17	1.81
3088677--3088785	33	3.3	33	72	10	105	32	25	20	22	1.98
3089492--3089516	12	2.1	12	100	0	50	40	20	16	24	1.91
3095718--3095772	10	5.6	10	74	20	53	65	7	1	25	1.28
3095710--3095782	21	3.7	19	70	24	53	64	5	2	27	1.29
3095690--3095779	39	2.4	37	76	12	92	64	5	3	26	1.31
3095718--3095761	21	2.2	20	88	12	63	70	6	0	22	1.11
3095837--3095928	9	9.9	9	70	19	64	65	1	1	32	1.07
3095833--3095928	19	5.1	19	74	14	74	64	1	1	33	1.07
3097936--3097965	2	15.0	2	92	0	51	53	0	46	0	1.00
3100447--3100480	10	3.4	10	87	0	50	35	20	23	20	1.96
3100809--3100854	21	2.1	21	84	8	56	41	8	4	45	1.55
3104193--3104280	44	2.0	43	86	6	124	38	11	15	34	1.84
3104588--3104612	12	2.1	12	100	0	50	28	0	8	64	1.22
3105014--3105046	17	1.9	17	88	11	50	27	0	6	66	1.15
3105254--3105377	50	2.4	50	82	5	142	36	16	12	35	1.85
3108492--3108535	22	2.0	22	81	0	52	61	11	9	18	1.55
3109564--3109602	19	2.2	18	86	9	53	43	2	0	53	1.14
3109524--3109646	54	2.2	57	75	10	128	45	1	1	51	1.20
3109610--3109663	27	2.0	29	85	10	78	48	0	3	48	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3109636--3109674	20	2.0	20	89	0	60	46	2	2	48	1.29
3109774--3109829	21	2.6	21	78	16	60	39	21	10	28	1.87
3128390--3128434	20	2.4	19	88	7	65	73	6	0	20	1.05
3131923--3131969	21	2.1	24	85	14	66	44	0	0	55	0.99
3133292--3133329	17	2.2	17	90	9	60	34	0	0	65	0.93
3133292--3133336	16	2.8	16	83	10	56	31	0	0	68	0.89
3135934--3136063	23	5.5	24	80	16	123	46	20	21	11	1.82
3136004--3136075	23	3.0	24	78	15	76	43	22	23	11	1.85
3135983--3136084	48	2.2	47	82	10	120	43	21	23	11	1.85
3140695--3140745	23	2.2	23	78	0	57	43	11	9	35	1.75
3145202--3145291	47	1.9	47	95	0	162	31	17	22	28	1.97
3145619--3145662	19	2.3	19	96	0	79	40	9	18	31	1.81
3168315--3168362	9	5.2	9	78	14	53	62	2	2	33	1.18
3169064--3169102	18	2.2	18	90	0	60	33	12	2	51	1.54
3176955--3177039	33	2.5	34	80	1	109	51	4	7	36	1.50
3184009--3184112	23	4.4	23	82	7	120	44	22	22	11	1.84
3184009--3184112	48	2.2	46	81	6	120	44	22	22	11	1.84
3186126--3186169	20	2.3	19	81	11	54	52	11	0	36	1.38
3186130--3186168	20	2.0	20	89	0	60	51	10	0	38	1.36
3187477--3187551	38	2.0	38	97	0	141	38	12	8	41	1.72
3188818--3188847	10	3.1	10	90	9	53	63	10	0	26	1.26
3200377--3200437	28	2.1	29	85	8	81	55	1	0	42	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3202075--3202109	7	5.0	7	89	10	54	42	0	0	57	0.99
3213880--3213989	55	2.0	55	100	0	220	40	29	14	16	1.88
3223960--3224019	10	6.1	10	74	3	50	38	3	0	58	1.15
3224076--3224130	10	5.7	10	76	20	55	36	1	1	60	1.18
3224079--3224130	19	2.7	19	77	17	54	38	1	1	57	1.21
3224076--3224152	21	3.8	20	73	16	70	40	1	2	55	1.22
3242880--3242922	21	2.0	21	86	0	59	46	9	0	44	1.35
3244380--3244419	20	2.0	20	90	9	64	45	22	2	30	1.66
3255187--3255214	4	7.0	4	100	0	56	25	25	0	50	1.50
3256437--3256487	20	2.5	20	87	9	68	37	0	7	54	1.29
3256437--3256493	20	2.8	20	81	13	62	40	0	7	52	1.28
3256437--3256504	20	3.3	20	75	15	59	38	0	7	54	1.28
3260700--3260727	13	2.2	13	100	0	56	60	0	14	25	1.34
3268172--3268257	23	3.7	23	81	4	93	39	17	12	30	1.87
3268349--3268406	12	5.0	11	78	12	62	46	20	18	13	1.83
3268349--3268408	24	2.5	24	89	2	86	45	20	18	16	1.86
3270108--3270183	28	2.9	26	78	16	77	46	1	3	48	1.29
3271618--3271684	31	2.2	31	86	5	93	43	4	4	47	1.43
3272094--3272390	151	2.0	151	89	1	452	38	9	18	34	1.83
3273045--3273101	26	2.2	26	82	14	66	54	3	3	38	1.35
3273810--3273908	29	3.3	30	72	9	85	31	1	12	55	1.43
3274510--3274544	17	2.1	17	94	0	61	40	8	17	34	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3278442--3278476	17	2.1	17	89	10	54	68	0	0	31	0.90
3278479--3278543	33	2.0	33	93	0	112	24	13	10	50	1.74
3283892--3283958	28	2.5	26	78	9	71	44	0	2	52	1.16
3285835--3285902	6	11.3	6	95	0	109	47	35	1	16	1.56
3291526--3291585	31	2.0	31	83	3	77	65	1	1	31	1.13
3304728--3304769	11	3.9	11	81	3	50	40	0	4	54	1.21
3304730--3304791	17	3.8	17	80	6	74	40	0	4	54	1.22
3304728--3304769	22	2.0	22	85	4	59	40	0	4	54	1.21
3304736--3304788	27	2.0	27	84	0	70	37	0	5	56	1.23
3305608--3305691	31	2.7	29	78	7	78	59	3	3	33	1.32
3306839--3306974	29	4.7	29	72	20	106	35	31	1	31	1.67
3322402--3322487	34	2.7	33	82	8	97	55	5	4	33	1.44
3322430--3322497	31	2.1	34	86	13	99	52	4	7	35	1.49
3324400--3324438	21	1.9	19	90	10	60	35	2	2	58	1.25
3326001--3326032	16	2.0	16	100	0	64	0	18	0	81	0.70
3326537--3326583	21	2.3	21	96	3	87	53	34	0	12	1.39
3326636--3326803	20	8.1	20	77	11	108	19	25	23	32	1.97
3326646--3326806	27	6.0	27	82	6	177	18	23	22	34	1.96
3326636--3326783	47	3.1	47	83	3	208	18	25	22	32	1.97
3327841--3327885	3	15.3	3	95	4	83	31	0	0	68	0.89
3333319--3333353	17	2.1	17	100	0	70	0	20	0	80	0.72
3333850--3333880	16	2.0	16	93	6	55	48	32	0	19	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3333855--3333902	21	2.3	21	92	3	80	52	33	2	12	1.51
3333877--3333911	14	2.4	15	90	4	54	48	31	5	14	1.67
3333933--3333978	20	2.5	17	89	10	65	15	28	26	30	1.96
3333954--3333981	13	2.2	13	100	0	56	14	21	21	42	1.88
3335016--3335051	3	12.3	3	94	5	65	30	0	0	69	0.89
3337148--3337187	21	1.9	21	85	10	55	2	20	10	67	1.31
3371586--3371613	2	14.0	2	100	0	56	0	0	50	50	1.00
3379359--3379422	29	2.2	29	77	5	67	32	7	7	51	1.59
3379544--3379570	11	2.5	11	100	0	54	70	7	0	22	1.12
3382027--3382100	33	2.3	32	82	11	82	33	2	0	63	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132