genome.fa.s12.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  117  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35569636--35569688	21	2.5	22	81	6	67	33	3	1	60	1.26
35569846--35569898	10	5.3	10	79	20	58	37	1	1	58	1.20
35569864--35569905	20	2.2	19	86	4	57	42	2	0	54	1.13
35569843--35569908	29	2.2	30	77	17	75	37	1	1	59	1.16
35570933--35570962	6	5.0	6	100	0	60	16	33	33	16	1.92
35572410--35572458	6	8.2	6	97	0	71	38	0	61	0	0.96
35572410--35572464	12	4.6	12	90	0	74	41	0	58	0	0.98
35572407--35572464	18	3.2	18	87	0	80	44	0	55	0	0.99
35575881--35575951	25	2.7	27	85	10	101	33	0	8	57	1.29
35575885--35575951	27	2.5	26	90	7	100	31	0	8	59	1.28
35577171--35577218	23	2.0	23	88	8	69	72	6	4	16	1.20
35577818--35578053	30	7.8	30	74	8	176	35	21	2	40	1.68
35583470--35583584	23	5.0	23	95	0	203	13	21	24	40	1.89
35583439--35583586	23	6.3	23	86	4	190	12	21	22	43	1.86
35592015--35592735	209	3.4	208	84	2	879	37	17	22	23	1.94
35592451--35592620	85	2.0	84	88	1	250	38	18	20	22	1.94
35594461--35594587	58	2.2	58	82	2	148	36	23	3	37	1.71
35594461--35594613	29	5.2	29	75	10	116	35	22	3	38	1.71
35598797--35598835	17	2.3	17	86	0	51	48	25	10	15	1.76
35615379--35615460	31	2.6	31	75	7	94	34	12	12	41	1.80
35616113--35616179	31	2.2	31	78	5	75	47	2	11	37	1.56
35617109--35617140	16	2.0	16	100	0	64	50	18	12	18	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35624108--35624140	2	16.5	2	93	0	57	48	3	0	48	1.17
35630918--35630980	12	5.2	12	84	0	72	69	22	3	4	1.21
35630918--35631005	24	3.7	23	81	1	86	69	22	3	4	1.22
35630959--35631005	23	2.2	21	85	11	60	68	25	4	2	1.19
35630918--35631008	12	7.8	12	74	4	69	69	23	3	4	1.22
35635041--35635127	44	2.0	44	95	0	156	32	13	12	41	1.82
35642517--35642573	24	2.3	24	82	11	71	26	1	22	49	1.60
35642517--35642576	23	2.5	24	86	5	77	25	1	25	48	1.61
35647566--35647606	21	1.9	22	90	5	66	63	0	0	36	0.95
35650295--35650348	28	2.0	28	85	10	76	35	5	9	50	1.58
35651418--35651445	7	4.0	7	100	0	56	42	0	0	57	0.99
35663937--35663977	7	5.9	7	88	0	64	82	2	14	0	0.76
35663937--35663976	21	1.9	21	94	0	71	82	2	15	0	0.77
35670958--35670985	5	5.6	5	100	0	56	17	0	82	0	0.68
35671110--35671190	29	2.8	30	81	5	103	41	2	3	51	1.32
35671675--35671736	26	2.5	25	87	7	81	43	3	25	27	1.70
35671683--35671735	26	2.0	26	96	0	97	45	1	28	24	1.64
35682177--35682219	23	2.0	21	86	9	59	44	0	6	48	1.29
35687304--35687427	59	2.1	58	79	8	135	41	2	16	38	1.62
35688578--35688610	16	2.1	16	94	0	57	51	9	6	33	1.58
35692069--35692472	29	13.8	29	68	19	202	33	25	3	38	1.72
35692065--35692444	59	6.5	58	83	8	443	33	25	3	37	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35692069--35692444	116	3.2	114	84	7	454	33	25	3	38	1.72
35704235--35704854	201	3.1	200	84	1	832	36	19	21	22	1.95
35707221--35707486	60	4.5	59	85	6	333	31	28	3	36	1.73
35707226--35707522	60	5.0	58	80	9	244	31	27	3	36	1.75
35710757--35710826	31	2.2	32	87	5	99	40	10	8	41	1.69
35711464--35711764	32	9.2	31	79	9	206	19	5	30	44	1.73
35711471--35711764	64	4.5	64	78	9	297	19	5	30	44	1.72
35711577--35711657	40	2.0	40	90	0	126	20	4	29	44	1.73
35711513--35711718	104	2.0	104	84	3	272	20	5	29	44	1.73
35711481--35711753	136	2.0	136	83	2	343	19	5	30	45	1.72
35723418--35723458	19	2.1	19	86	9	55	51	0	0	48	1.00
35723468--35723517	22	2.2	24	82	13	61	54	2	0	44	1.11
35723377--35723527	55	2.6	56	76	12	146	50	2	1	45	1.24
35724138--35724190	15	3.4	15	75	10	52	49	16	9	24	1.76
35724144--35724189	16	2.9	16	78	12	51	52	17	8	21	1.71
35741356--35742109	246	2.9	259	83	7	964	38	19	19	22	1.93
35749479--35749521	10	4.3	10	82	5	52	48	0	2	48	1.14
35754053--35754086	6	5.5	6	89	3	50	44	0	2	52	1.16
35756316--35756363	18	2.7	17	78	9	51	47	4	0	47	1.21
35762024--35762057	2	17.0	2	100	0	68	50	0	0	50	1.00
35763273--35763310	18	2.1	19	85	5	51	57	0	2	39	1.12
35763767--35763822	27	2.1	27	89	0	85	35	17	17	28	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35765538--35765585	21	2.3	21	79	17	55	58	0	4	37	1.18
35771831--35771897	33	2.0	33	94	0	116	34	7	40	17	1.78
35775636--35775838	42	4.8	42	79	2	210	23	23	27	26	2.00
35778492--35778539	25	2.0	25	87	4	71	10	2	14	72	1.19
35779281--35779330	13	3.8	13	97	0	91	46	20	0	34	1.51
35781855--35781923	16	4.3	15	71	20	50	52	8	2	36	1.47
35781855--35781923	33	2.1	32	81	7	77	52	8	2	36	1.47
35802264--35802322	31	1.9	31	89	6	93	44	10	10	35	1.72
35802493--35802540	2	23.5	2	83	12	62	47	2	4	45	1.33
35808271--35808300	6	5.0	6	100	0	60	16	0	83	0	0.65
35810274--35810298	13	1.9	13	100	0	50	32	8	4	56	1.47
35813000--35813036	18	2.1	18	89	0	56	48	0	27	24	1.51
35814537--35814569	14	2.3	15	89	5	50	21	3	3	72	1.11
35815594--35815648	28	2.0	28	82	13	69	45	0	1	52	1.11
35828546--35828595	24	2.1	24	85	7	66	54	0	0	46	1.00
35830786--35830860	12	6.2	12	72	6	62	69	16	5	9	1.33
35830786--35830882	24	4.1	23	75	9	79	68	15	6	10	1.38
35830879--35830960	22	3.9	21	78	10	69	67	20	4	7	1.35
35834251--35834280	4	7.5	4	100	0	60	46	0	0	53	1.00
35835206--35835287	38	2.2	38	90	0	128	23	10	9	56	1.63
35854179--35854278	43	2.3	43	77	1	101	34	5	4	57	1.39
35860783--35860816	6	5.7	6	85	0	50	0	79	0	20	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35860785--35860816	12	2.7	12	100	0	64	0	78	0	21	0.76
35875231--35875289	10	6.1	10	73	13	52	64	0	5	30	1.15
35875230--35875287	20	3.0	20	80	14	75	63	0	6	29	1.20
35875470--35875517	23	2.1	23	92	0	78	29	4	2	64	1.23
35875470--35875535	23	2.8	24	81	11	73	30	3	1	65	1.17
35875494--35875608	9	12.3	9	71	15	65	33	2	1	62	1.19
35875514--35875592	29	2.8	27	72	14	70	35	2	1	60	1.18
35876466--35876500	3	11.7	3	100	0	70	68	0	0	31	0.90
35876467--35876531	9	7.3	10	80	19	58	64	1	0	33	1.03
35880134--35880263	67	1.9	67	89	3	199	29	0	27	43	1.56
35884017--35884057	20	2.1	19	86	4	55	53	7	2	36	1.42
35884088--35884124	20	1.9	20	88	5	58	70	2	0	27	1.01
35884088--35884125	10	3.8	10	83	13	51	71	2	0	26	1.00
35887322--35887374	22	2.4	22	87	0	88	43	26	22	7	1.80
35891667--35891719	22	2.4	22	83	0	70	43	22	22	11	1.85
35897540--35897571	15	2.1	15	94	0	55	40	12	0	46	1.42
35906663--35906710	25	2.0	24	84	8	62	14	31	14	39	1.86
35908076--35908317	124	1.9	125	88	0	369	40	10	4	44	1.60
35917041--35917076	12	3.0	12	87	0	54	83	8	0	8	0.82
35922387--35922463	5	15.0	5	74	15	52	37	1	2	58	1.20
35922387--35922462	29	2.7	27	84	11	91	36	1	2	59	1.20
35925494--35925541	20	2.5	20	96	3	89	45	10	4	39	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35926498--35926530	16	2.1	16	94	0	57	27	3	24	45	1.68
35931191--35931231	18	2.3	18	83	4	57	53	2	2	41	1.27
35937458--35937514	24	2.4	24	82	8	71	45	0	0	54	0.99
35945739--35945785	17	2.5	20	75	25	57	70	8	8	12	1.34
35953120--35953155	18	2.1	17	89	5	54	30	0	5	63	1.17
35962662--35962733	22	3.2	22	69	21	67	47	11	9	31	1.72
35962663--35962737	24	3.2	24	64	27	61	49	10	8	32	1.66
35962662--35962763	46	2.2	46	89	1	159	49	9	8	32	1.67
35969060--35969097	20	1.9	20	88	0	58	42	2	0	55	1.14
35974024--35974089	32	2.1	32	100	0	132	30	16	19	33	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132