genome.fa.s12.2.7.7.80.10.50.1000.121.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  121  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37054629--37054678	17	3.0	17	75	13	50	34	0	2	64	1.05
37063010--37063108	48	2.1	48	84	3	128	50	4	0	45	1.20
37070499--37070538	18	2.2	19	86	8	57	20	5	10	65	1.42
37072605--37072629	2	12.5	2	100	0	50	52	0	48	0	1.00
37075846--37075885	14	2.9	14	88	0	62	27	7	27	37	1.84
37076084--37076131	21	2.3	21	85	7	62	29	0	4	66	1.10
37078740--37078785	23	2.0	23	86	0	65	30	0	6	63	1.20
37081520--37081682	81	2.0	81	98	0	317	19	20	21	38	1.93
37086847--37086898	22	2.5	21	81	6	61	11	3	13	71	1.28
37086847--37086919	20	3.5	20	75	12	60	10	2	16	69	1.28
37086922--37087009	23	3.9	22	76	11	72	11	5	13	69	1.35
37086906--37087032	67	1.9	67	81	3	157	10	4	14	70	1.31
37086945--37087027	32	2.6	31	78	3	85	8	4	16	69	1.31
37086915--37087039	12	10.8	12	72	9	82	9	4	16	69	1.32
37086933--37087053	55	2.2	56	85	5	165	9	4	16	68	1.35
37087164--37087203	20	2.1	19	90	4	62	32	0	5	62	1.17
37087170--37087211	19	2.2	20	86	4	59	28	0	9	61	1.27
37087160--37087232	29	2.5	28	78	12	76	32	0	6	60	1.23
37089430--37089498	24	2.9	24	84	4	86	30	11	7	50	1.65
37093599--37093736	23	5.9	22	80	12	118	10	24	23	40	1.87
37093599--37093712	46	2.5	45	79	12	142	10	24	24	40	1.87
37095053--37095115	24	2.6	24	89	0	90	28	12	7	50	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37097434--37097492	29	2.0	29	87	6	84	38	1	16	42	1.59
37098253--37098399	76	1.9	78	83	5	192	47	7	5	39	1.55
37106789--37106822	18	1.9	18	88	5	52	64	0	0	35	0.94
37121598--37121662	27	2.4	27	82	10	80	46	1	1	50	1.20
37121622--37121665	18	2.5	17	80	20	54	45	0	2	52	1.13
37121622--37121678	19	3.1	19	82	7	64	40	0	3	56	1.17
37130247--37130677	212	2.0	211	95	0	781	33	16	17	32	1.93
37131493--37131537	22	2.0	24	86	8	67	33	2	0	64	1.06
37131904--37131971	30	2.3	30	79	2	75	30	4	11	52	1.57
37132085--37132146	31	1.9	32	84	15	83	46	6	3	43	1.45
37135486--37135535	19	2.8	17	82	11	64	74	0	18	8	1.06
37139308--37139367	29	2.1	28	84	12	77	45	0	1	53	1.10
37141695--37141720	6	4.3	6	100	0	52	30	0	0	69	0.89
37149081--37149140	31	1.9	31	83	6	77	46	15	1	36	1.55
37151916--37151974	24	2.7	21	76	20	59	62	0	0	37	0.95
37160226--37160286	26	2.4	25	78	8	68	24	9	1	63	1.34
37162460--37162528	35	2.0	35	82	5	86	65	1	1	31	1.11
37171243--37171277	14	2.5	14	85	0	52	62	2	0	34	1.10
37173081--37173115	7	5.0	7	89	0	52	71	0	0	28	0.86
37191299--37191356	27	2.1	27	83	0	71	29	36	24	10	1.88
37192282--37192307	3	8.7	3	100	0	52	0	65	0	34	0.93
37194821--37194958	70	2.0	70	80	8	156	13	6	18	60	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37200392--37200673	51	5.5	51	84	1	323	33	14	23	28	1.94
37203188--37203238	20	2.4	21	81	15	61	50	1	1	45	1.24
37203188--37203241	21	2.6	21	82	14	67	50	1	1	46	1.23
37204743--37204775	13	2.8	12	86	13	50	27	33	6	33	1.81
37205951--37205995	19	2.2	21	74	22	51	48	6	4	40	1.49
37210494--37210548	27	2.0	28	85	3	76	32	34	21	10	1.89
37211480--37211508	3	9.7	3	100	0	58	0	65	0	34	0.93
37219532--37219683	75	2.0	75	100	0	304	20	25	34	19	1.96
37226168--37226305	74	1.9	74	90	0	222	21	23	16	38	1.93
37226254--37226813	114	4.9	114	82	4	615	23	25	17	33	1.96
37226253--37226795	232	2.4	227	85	4	714	23	25	17	32	1.97
37226712--37226910	95	2.1	95	86	2	274	21	25	18	34	1.96
37227080--37227203	42	3.0	42	78	7	126	20	26	12	41	1.87
37227319--37227588	49	5.5	49	72	10	201	18	30	16	34	1.94
37227263--37227883	99	6.3	99	83	4	661	18	27	17	36	1.93
37227256--37227883	196	3.2	194	82	4	735	19	27	17	36	1.93
37228704--37228867	50	3.3	49	76	9	179	19	29	15	34	1.93
37228531--37229163	99	6.4	98	79	6	543	20	27	15	36	1.93
37228696--37229040	50	7.0	49	69	9	121	20	27	15	36	1.93
37228512--37229166	196	3.3	196	80	3	678	20	27	15	37	1.92
37228531--37229168	97	6.5	97	80	4	577	20	27	15	37	1.92
37229767--37229907	49	2.9	50	81	6	137	19	24	17	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37229878--37230392	99	5.3	99	83	5	591	19	29	16	35	1.93
37229929--37230093	50	3.4	49	68	9	120	20	26	16	36	1.94
37229878--37230401	196	2.7	196	80	7	607	19	28	15	36	1.93
37232116--37232157	19	2.2	20	86	4	59	2	19	0	78	0.86
37236170--37236257	37	2.3	38	82	9	99	53	2	13	30	1.52
37247690--37247863	88	2.0	88	98	0	339	36	8	11	44	1.70
37260586--37260613	14	2.0	14	100	0	56	42	21	14	21	1.88
37262145--37262174	7	4.3	7	95	0	51	40	43	0	16	1.48
37264152--37264203	27	1.9	27	88	0	77	30	7	25	36	1.84
37265973--37266008	19	2.0	18	89	10	56	52	8	5	33	1.55
37271958--37272006	22	2.2	22	92	0	80	59	4	0	36	1.17
37271964--37272007	13	3.7	13	74	22	51	61	2	0	36	1.09
37275256--37275344	31	3.0	27	78	14	79	42	12	8	35	1.74
37283581--37283656	7	11.1	7	69	5	57	34	22	22	21	1.97
37283591--37283639	14	3.7	13	84	10	64	40	20	16	22	1.91
37283582--37283655	26	2.7	27	85	6	105	35	22	20	21	1.96
37285730--37285763	18	1.9	18	94	5	61	47	0	0	52	1.00
37285757--37285798	17	2.5	17	88	7	59	50	0	2	47	1.14
37285728--37285798	6	12.3	6	69	19	53	47	0	1	50	1.09
37285731--37285801	28	2.5	28	80	11	81	52	0	1	46	1.09
37286500--37286549	17	3.0	17	85	8	68	56	0	2	42	1.11
37286471--37286545	6	13.0	6	71	18	61	49	0	1	49	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37285411--37286897	743	2.0	742	97	0	2821	34	21	15	28	1.94
37288448--37288556	29	3.7	28	78	8	92	38	23	3	33	1.73
37288530--37288869	58	5.8	58	75	10	282	31	27	3	38	1.73
37288564--37288644	30	2.7	30	79	12	96	30	27	4	37	1.78
37288476--37288722	29	8.4	29	71	17	127	33	25	2	38	1.71
37288535--37288864	117	2.8	117	77	7	305	32	27	3	37	1.73
37295121--37295153	3	11.0	3	100	0	66	66	0	0	33	0.92
37296489--37296539	19	2.7	19	87	3	68	50	3	0	45	1.20
37304639--37304828	52	3.7	52	94	0	317	27	13	24	34	1.93
37313925--37314011	29	3.0	29	91	1	129	26	2	31	40	1.68
37313910--37314064	29	5.3	29	81	4	116	32	3	25	38	1.74
37314029--37314230	30	6.8	30	87	5	232	33	0	26	39	1.63
37313905--37314233	60	5.5	60	76	11	259	33	2	26	37	1.71
37313905--37314233	30	11.1	29	80	11	226	33	2	26	37	1.71
37318963--37319005	22	2.1	22	83	12	56	69	2	2	25	1.12
37319001--37319067	30	2.2	32	73	24	74	61	1	1	35	1.15
37322146--37322171	5	5.2	5	100	0	52	19	80	0	0	0.71
37323150--37323184	14	2.5	14	85	0	52	0	22	2	74	0.95
37323940--37323988	24	2.0	24	88	0	71	24	30	20	24	1.98
37327101--37327170	19	3.7	18	71	7	59	60	0	2	37	1.12
37327101--37327178	17	4.1	18	68	15	50	60	1	2	35	1.19
37327230--37327296	20	3.4	20	70	15	59	56	8	1	32	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37327289--37327328	19	2.0	22	85	14	59	65	2	0	32	1.06
37327289--37327351	27	2.3	27	80	5	72	66	1	1	30	1.10
37328115--37328172	20	2.8	20	82	10	64	29	0	12	58	1.34
37328124--37328173	22	2.4	21	86	6	66	28	0	12	60	1.32
37328077--37328248	10	18.0	9	64	21	57	33	1	5	59	1.32
37348939--37348971	7	4.9	7	96	3	59	15	9	0	75	1.03
37353277--37353324	24	2.0	25	83	4	62	41	0	6	52	1.27
37362238--37362272	17	2.1	17	88	0	52	48	2	0	48	1.16
37362489--37362528	15	2.7	15	88	3	55	30	0	0	70	0.88
37367135--37367191	29	2.0	29	92	0	96	33	12	17	36	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132