genome.fa.s12.2.7.7.80.10.50.1000.97.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  97  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29783530--29783578	25	1.9	25	83	4	62	73	4	0	22	1.00
29783626--29783687	30	2.1	30	87	0	88	54	11	0	33	1.36
29787336--29787373	19	2.1	18	90	5	58	57	7	0	34	1.28
29788087--29788188	29	3.5	29	95	0	177	54	0	0	45	0.99
29793693--29793722	13	2.4	13	94	5	53	70	0	0	30	0.88
29793689--29793742	17	2.8	20	73	26	62	64	0	0	35	0.94
29793978--29794050	39	1.9	39	86	5	105	71	10	4	13	1.28
29797248--29797355	51	2.1	52	85	5	146	42	8	11	37	1.71
29803152--29803203	19	2.7	19	87	0	68	30	23	23	23	1.99
29803152--29803234	38	2.2	38	84	0	103	32	18	25	24	1.97
29803170--29803234	19	3.4	19	89	0	103	32	15	27	24	1.95
29806173--29806229	21	2.7	21	88	0	87	29	24	36	8	1.86
29806197--29806241	21	2.2	21	84	4	56	40	22	31	6	1.80
29811540--29811593	27	2.0	27	92	0	90	33	27	14	24	1.94
29812327--29812386	20	3.0	19	87	7	75	35	25	31	8	1.85
29819444--29819524	19	4.3	19	85	0	108	33	22	23	20	1.97
29819507--29819616	26	4.2	26	82	2	123	30	16	23	30	1.96
29819507--29819629	52	2.4	51	84	2	147	30	15	23	30	1.95
29823267--29823293	13	2.1	13	100	0	54	29	14	22	33	1.94
29825948--29826012	30	2.2	30	88	5	87	38	3	20	38	1.68
29825948--29826012	29	2.2	30	88	5	96	38	3	20	38	1.68
29826011--29826400	29	13.5	28	71	12	170	36	2	25	35	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29826106--29826407	59	5.2	56	76	10	220	39	2	23	35	1.67
29826021--29826328	86	3.6	86	79	10	312	37	2	25	35	1.69
29826021--29826282	142	1.8	142	81	6	325	36	2	26	34	1.69
29827909--29827966	26	2.2	26	81	9	64	22	3	24	50	1.65
29827981--29828031	6	9.0	6	76	20	56	52	3	0	43	1.19
29827981--29828024	10	4.1	10	83	16	61	54	4	0	40	1.21
29827981--29828031	23	2.3	22	93	3	84	52	3	0	43	1.19
29828509--29828908	39	10.3	39	72	7	215	25	19	33	23	1.97
29828509--29828754	78	3.2	77	86	1	339	23	18	33	23	1.97
29828611--29828871	117	2.2	117	86	2	355	25	19	31	22	1.98
29828509--29828793	78	3.7	77	81	3	313	24	18	33	23	1.97
29841160--29841228	30	2.3	30	82	5	86	39	2	18	39	1.66
29841160--29841236	30	2.6	29	81	8	75	40	2	18	38	1.64
29841218--29841274	29	1.9	30	85	3	80	38	3	22	35	1.72
29841261--29841439	29	6.1	28	75	10	119	32	3	27	35	1.74
29841212--29841429	89	2.5	89	79	7	223	33	2	26	37	1.71
29841417--29841461	22	2.0	22	86	0	63	31	4	31	33	1.78
29842642--29842675	14	2.5	14	90	4	52	61	0	0	38	0.96
29843215--29843257	23	1.9	23	90	4	70	58	4	0	37	1.19
29843215--29843274	10	6.0	10	71	21	54	56	5	0	38	1.21
29843231--29843293	17	3.7	17	83	8	83	53	6	0	39	1.26
29843226--29843293	6	11.8	6	72	20	56	54	5	0	39	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29848044--29848085	5	8.2	5	89	5	66	0	19	57	23	1.41
29848449--29848531	32	2.6	34	83	11	95	71	18	2	8	1.23
29848451--29848583	12	11.8	12	70	10	68	69	17	5	8	1.33
29848451--29848583	44	3.0	43	78	5	122	69	17	5	8	1.33
29848509--29848554	14	3.3	15	85	11	55	71	15	4	8	1.26
29848607--29848705	22	4.8	21	77	16	84	66	18	7	8	1.40
29851044--29851072	14	2.1	14	100	0	58	34	34	0	31	1.58
29866410--29866446	18	2.0	19	89	5	58	21	2	13	62	1.44
29879524--29879558	16	2.2	17	90	10	56	60	8	5	25	1.49
29895572--29895628	21	2.7	21	86	0	78	14	17	31	36	1.89
29904115--29904168	21	2.6	21	85	5	74	25	11	27	35	1.90
29905849--29906314	233	2.0	233	88	2	686	29	13	28	28	1.94
29912676--29912731	28	2.2	24	81	15	60	32	21	10	35	1.88
29912682--29912737	28	2.0	28	100	0	112	32	25	7	35	1.83
29917313--29917420	29	3.5	29	70	16	99	47	4	2	45	1.38
29917285--29917479	65	3.0	65	96	1	347	46	5	4	44	1.44
29924444--29924482	17	2.3	17	81	0	51	61	2	2	33	1.23
29926265--29926754	50	9.8	50	68	13	236	26	17	18	37	1.93
29926281--29927112	101	8.3	99	79	5	697	26	18	18	36	1.93
29926263--29927120	201	4.3	200	79	5	775	26	18	18	37	1.93
29944875--29945037	50	3.3	50	92	0	263	34	19	30	16	1.94
29944875--29945018	26	5.7	26	75	6	152	34	18	29	16	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29944875--29945037	26	6.5	24	73	6	119	34	19	30	16	1.94
29944875--29945066	100	1.9	100	84	0	258	36	18	27	18	1.94
29948358--29948410	20	2.7	20	87	0	70	30	9	28	32	1.88
29948523--29948586	34	1.9	33	84	6	85	39	18	6	35	1.76
29951201--29951242	20	2.1	20	90	0	66	28	9	28	33	1.88
29952044--29952079	4	8.8	4	87	6	54	75	0	2	22	0.94
29952027--29952094	35	1.9	36	85	8	95	73	1	2	22	1.05
29952172--29952219	14	3.5	13	78	10	51	72	0	2	25	0.95
29953421--29953460	19	2.0	20	85	4	55	32	2	12	52	1.52
29963584--29963625	17	2.4	17	92	4	66	26	26	0	47	1.52
29963781--29963831	3	17.0	3	84	8	68	35	0	1	62	1.06
29964240--29964390	51	3.0	48	70	12	124	40	2	7	49	1.44
29964314--29964360	20	2.3	20	85	3	58	44	0	4	51	1.21
29964244--29964406	50	3.2	50	75	10	152	39	2	8	49	1.47
29964272--29964689	148	2.9	142	85	5	534	41	3	8	45	1.53
29965285--29965324	21	2.0	20	85	5	53	17	12	5	65	1.44
29966943--29966997	26	2.2	25	83	9	67	20	3	16	60	1.51
29970222--29970304	42	2.0	42	92	0	139	39	9	22	27	1.85
29971612--29971657	24	1.9	24	91	8	76	28	26	21	23	1.99
29971639--29971699	27	2.2	27	91	2	95	31	26	18	24	1.97
29971651--29971706	27	2.1	27	100	0	112	32	25	17	25	1.97
29980521--29980591	25	2.9	24	85	4	88	30	25	19	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29984235--29984988	49	15.4	49	74	5	612	22	30	14	32	1.94
29984235--29984988	98	7.7	98	87	1	1037	22	30	14	32	1.94
29996909--29997081	30	5.8	30	76	8	147	41	6	19	32	1.76
29996914--29997081	60	2.8	59	80	4	176	42	5	18	33	1.75
29996980--29997137	30	5.2	29	80	6	154	37	6	19	36	1.79
29996980--29997138	60	2.6	60	81	6	187	37	6	19	35	1.79
29999706--29999909	30	6.9	29	76	9	144	42	1	21	34	1.64
29999780--29999914	59	2.3	59	85	5	184	42	2	18	36	1.66
30001746--30002214	39	12.1	38	67	13	206	25	19	28	26	1.98
30001873--30002328	39	11.7	39	66	8	228	24	19	30	25	1.98
30001864--30002371	78	6.5	78	86	3	643	24	20	30	25	1.98
30001864--30002381	156	3.3	155	88	1	725	24	20	30	25	1.99
30001846--30002381	234	2.3	234	86	1	754	25	19	30	25	1.98
30011392--30011573	88	2.1	89	83	7	228	40	3	20	35	1.69
30011244--30011580	30	11.4	30	73	9	194	40	3	20	35	1.69
30017625--30017694	18	3.8	18	80	10	70	68	1	1	28	1.06
30018132--30018214	9	9.2	9	79	12	55	38	2	2	56	1.25
30018159--30018189	8	3.9	8	95	0	53	29	0	0	70	0.87
30020420--30020444	13	1.9	13	100	0	50	52	0	0	48	1.00
30023683--30023907	30	7.6	30	80	5	210	36	3	25	35	1.72
30025392--30025425	15	2.3	15	90	5	52	20	5	38	35	1.77
30025926--30026396	50	9.7	50	74	12	293	19	33	15	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30025921--30026286	99	3.7	99	80	3	355	18	33	15	33	1.92
30025919--30026396	149	3.3	147	75	8	381	19	33	15	32	1.93
30027128--30027245	39	2.8	40	87	7	157	17	25	12	44	1.84
30034615--30034808	29	6.6	29	77	9	153	37	2	24	35	1.70
30034649--30034808	59	2.7	60	78	7	166	38	2	23	35	1.68
30042653--30043296	93	6.8	94	69	11	296	34	17	21	26	1.95
30042642--30043306	285	2.3	283	80	6	729	35	17	21	26	1.95
30043137--30043448	148	2.1	148	85	4	405	34	16	22	26	1.95
30055834--30055880	15	3.0	15	76	11	58	23	4	12	59	1.51
30065342--30065388	19	2.5	19	85	0	58	61	2	2	34	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132