genome.fa.s12.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  118  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35981407--35981468	29	2.1	30	82	8	74	62	6	9	20	1.47
35983728--35983871	73	2.0	73	100	0	288	38	19	11	30	1.86
35986966--35987054	32	2.8	32	77	3	90	44	5	5	43	1.51
35988491--35988525	16	2.1	17	89	5	54	68	14	5	11	1.37
35988657--35988712	17	3.3	17	72	5	51	60	7	1	30	1.33
35988680--35988867	72	2.6	72	86	5	234	52	6	10	30	1.61
35990609--35991016	40	10.3	40	76	10	336	23	19	27	29	1.98
35990643--35991037	79	5.0	78	80	8	363	24	18	27	29	1.98
35990609--35990936	119	2.8	117	80	9	317	23	19	27	29	1.98
35991093--35991221	50	2.6	50	82	0	150	24	27	14	32	1.95
35997294--35997364	34	2.1	34	97	0	133	33	23	4	38	1.75
36004242--36004277	15	2.3	15	95	4	63	86	0	0	13	0.58
36010327--36010361	3	12.0	3	93	6	63	0	31	0	68	0.90
36012632--36012666	8	4.5	8	89	3	54	0	17	0	82	0.66
36012632--36012667	17	2.2	16	90	9	56	0	16	0	83	0.65
36014967--36014991	3	8.3	3	100	0	50	0	0	64	36	0.94
36014937--36015025	27	3.3	27	75	0	70	11	7	48	32	1.68
36014940--36015025	39	2.2	39	95	0	154	10	6	50	32	1.64
36017835--36017873	18	2.2	18	90	0	60	51	15	5	28	1.64
36022431--36022507	8	9.4	8	73	5	55	51	1	3	42	1.28
36022441--36022531	42	2.2	41	88	7	130	43	2	7	46	1.44
36022523--36022751	30	7.5	30	65	18	123	48	1	3	45	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36022458--36022690	112	2.1	108	84	6	308	45	1	6	46	1.37
36022593--36022672	8	9.5	8	73	10	70	56	2	0	41	1.13
36022611--36022739	26	4.7	27	71	13	102	49	2	2	45	1.27
36022626--36022745	22	5.6	22	66	25	78	50	1	2	45	1.25
36022774--36022836	8	7.4	8	82	10	63	60	1	3	34	1.22
36025575--36025802	94	2.4	94	100	0	456	32	25	12	29	1.93
36030194--36030234	18	2.2	19	91	4	66	43	0	21	34	1.53
36030362--36030448	41	2.1	41	91	0	138	17	25	18	39	1.92
36030493--36030532	14	2.7	16	81	18	59	45	0	0	55	0.99
36031769--36031824	19	2.9	18	77	15	51	55	12	1	30	1.47
36032369--36032743	41	9.1	41	81	8	370	21	28	18	31	1.97
36036852--36036892	2	20.5	2	100	0	82	51	0	48	0	1.00
36058568--36058614	18	2.5	19	83	13	62	42	8	4	44	1.54
36062924--36062966	15	2.9	14	78	21	52	62	0	0	37	0.95
36062903--36062992	30	3.1	29	77	15	96	64	0	0	35	0.94
36063365--36063419	29	1.9	28	85	10	76	36	1	9	52	1.44
36070016--36070044	2	14.5	2	100	0	58	48	0	0	51	1.00
36075019--36075061	22	1.9	22	85	4	59	13	9	4	72	1.26
36075027--36075070	22	2.0	22	81	0	52	15	6	2	75	1.12
36081239--36081286	24	1.9	26	83	8	64	37	8	0	54	1.31
36087252--36087343	31	3.0	31	82	3	114	40	5	13	41	1.67
36095891--36095944	20	2.8	19	76	20	58	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36095897--36095939	22	2.1	19	87	12	59	46	0	0	53	1.00
36095900--36095969	29	2.5	28	86	9	106	52	0	0	47	1.00
36095900--36095978	28	2.9	27	81	9	97	51	0	0	48	1.00
36096706--36096746	6	6.7	6	91	2	64	36	0	60	2	1.10
36096808--36096850	22	2.0	20	82	8	50	51	0	2	46	1.13
36104190--36104415	112	2.0	112	92	0	380	40	11	10	37	1.75
36129532--36129563	2	16.0	2	93	0	55	53	0	0	46	1.00
36131689--36131731	21	2.1	21	91	4	70	44	4	0	51	1.22
36134997--36135043	12	4.0	12	77	5	51	68	6	0	25	1.13
36139560--36139599	20	2.0	20	90	4	64	30	5	10	55	1.54
36166799--36166877	41	1.9	41	94	0	140	45	18	2	32	1.63
36167348--36167375	2	14.0	2	100	0	56	50	0	0	50	1.00
36175478--36175530	26	2.1	25	86	6	72	66	1	0	32	1.03
36175479--36175546	18	3.8	17	73	13	57	66	1	1	30	1.10
36178271--36178315	22	2.0	22	82	0	54	11	11	15	62	1.55
36179117--36179144	2	14.0	2	100	0	56	50	0	0	50	1.00
36184203--36184246	17	2.6	17	82	10	54	29	0	0	70	0.88
36184296--36184328	17	1.9	17	100	0	66	39	0	12	48	1.40
36196507--36196551	6	7.5	6	92	0	63	48	13	0	37	1.42
36211858--36212220	22	16.3	22	81	5	406	29	13	36	20	1.91
36212012--36212056	17	2.6	17	89	0	63	26	13	40	20	1.89
36212188--36212247	17	3.6	17	71	8	61	28	15	41	15	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36212156--36212316	32	5.3	32	84	10	198	27	14	42	14	1.86
36212156--36212459	27	11.1	27	82	10	339	27	15	39	17	1.89
36212279--36212441	49	3.2	50	83	8	206	28	15	39	17	1.90
36212112--36212459	59	6.5	54	82	9	339	28	14	39	17	1.89
36219830--36219861	15	2.0	17	88	11	50	31	0	6	62	1.20
36219937--36219977	21	2.0	20	86	13	57	53	19	2	24	1.57
36228055--36228097	15	2.9	15	78	0	50	58	0	6	34	1.25
36248959--36249037	40	2.0	39	95	4	142	40	8	30	20	1.83
36253138--36253187	19	2.6	19	96	0	91	56	8	28	8	1.57
36262750--36262795	20	2.2	20	84	3	56	73	4	0	21	1.00
36263066--36263103	4	9.5	4	94	0	67	52	23	0	23	1.47
36265768--36265815	23	2.1	23	96	0	87	33	16	2	47	1.58
36269804--36269837	17	1.9	17	88	5	50	14	14	8	61	1.55
36270678--36270737	10	5.9	10	73	9	50	6	8	18	66	1.40
36270672--36270748	21	3.7	21	77	8	86	6	7	20	64	1.42
36270774--36270836	12	5.3	12	78	3	65	9	3	19	68	1.31
36270773--36270830	23	2.5	23	77	2	62	10	5	17	67	1.38
36270771--36270851	32	2.4	32	83	6	90	11	3	19	65	1.39
36270964--36271048	39	2.2	39	83	8	111	27	0	5	67	1.14
36278775--36278804	2	15.0	2	100	0	60	50	0	0	50	1.00
36282165--36282217	21	2.5	22	87	6	74	60	0	3	35	1.15
36283053--36283087	10	3.5	10	84	0	52	42	2	0	54	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36284135--36284197	29	2.3	27	83	5	72	44	1	4	49	1.33
36293932--36293963	14	2.3	14	100	0	64	37	15	28	18	1.92
36294671--36294726	19	2.9	19	84	10	62	30	0	3	66	1.09
36294688--36294726	20	2.0	21	90	10	64	30	0	5	64	1.15
36298626--36298686	27	2.2	28	80	8	72	34	0	6	59	1.24
36303077--36303126	26	2.0	25	84	4	64	38	6	20	36	1.77
36305804--36305832	14	2.1	14	100	0	58	72	13	0	13	1.13
36306212--36306264	26	2.0	26	85	0	70	28	13	18	39	1.88
36312504--36312617	38	3.0	38	92	0	192	27	21	18	33	1.96
36312569--36312676	51	2.1	50	86	1	153	27	24	17	30	1.97
36314731--36314776	21	2.1	22	81	18	53	41	8	8	41	1.67
36323995--36324647	62	10.9	60	78	9	585	29	17	15	37	1.91
36323986--36324647	244	2.8	240	82	7	763	29	17	15	37	1.91
36324007--36324647	60	10.7	58	75	12	378	29	17	15	37	1.91
36325451--36325558	30	3.5	30	87	2	108	62	3	6	26	1.36
36325462--36325518	17	3.5	17	72	20	59	61	3	10	24	1.44
36327289--36327317	15	1.9	15	100	0	58	20	20	31	27	1.98
36327874--36327932	22	2.7	22	75	0	64	23	10	28	37	1.88
36328025--36328673	84	7.7	84	91	2	921	46	4	5	43	1.47
36328239--36328461	45	5.2	45	65	24	124	47	4	6	41	1.49
36328025--36328660	251	2.5	251	91	3	981	46	5	5	43	1.48
36328774--36328822	12	3.8	12	75	19	53	40	8	0	51	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36328784--36328818	17	2.1	16	89	5	52	48	8	0	42	1.33
36328774--36328831	28	2.1	28	86	0	80	43	10	0	46	1.38
36332625--36332847	62	3.6	59	77	8	232	41	13	16	28	1.86
36332826--36332867	20	2.0	22	90	9	70	54	0	0	45	0.99
36332765--36332928	83	2.0	82	83	9	210	40	11	14	32	1.82
36332848--36333047	61	3.3	60	88	3	294	40	14	16	29	1.87
36333063--36333096	16	2.0	18	88	11	54	55	5	5	32	1.48
36336659--36336703	5	9.0	5	100	0	90	20	40	0	40	1.52
36350491--36350549	30	2.0	30	86	6	84	37	0	1	61	1.07
36351364--36351400	13	2.8	13	87	4	56	0	24	5	70	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132