genome.fa.s12.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  51  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14022486--14022549	18	3.6	18	82	0	74	57	1	0	40	1.08
14022466--14022545	42	2.0	41	87	5	117	52	1	1	45	1.16
14022902--14023563	208	3.2	208	87	2	873	21	22	18	36	1.95
14038904--14039304	29	13.8	30	70	17	203	34	2	27	35	1.72
14038901--14039293	116	3.4	116	81	7	460	34	3	27	35	1.72
14038901--14039302	58	6.9	58	78	8	365	34	2	27	35	1.72
14039309--14039368	28	2.1	29	84	3	77	35	5	25	35	1.78
14039309--14039386	29	2.7	29	82	4	77	32	3	24	39	1.73
14041298--14041329	17	1.9	16	93	6	55	43	0	3	53	1.16
14041315--14041380	6	11.0	6	74	6	53	56	1	0	42	1.08
14041317--14041380	18	3.6	17	81	8	74	57	1	0	40	1.08
14041297--14041380	42	2.0	41	86	2	114	53	1	1	44	1.16
14041737--14042392	209	3.1	207	86	3	859	21	22	19	36	1.95
14050518--14050579	23	2.7	23	94	0	106	46	12	17	22	1.82
14050519--14050591	23	3.2	23	86	3	94	43	12	19	24	1.85
14050536--14050603	23	3.0	23	82	4	57	44	11	20	23	1.84
14054571--14054646	24	2.8	26	80	15	84	38	0	25	36	1.56
14054505--14055030	59	9.0	59	74	11	345	34	4	26	34	1.77
14054620--14055031	117	3.5	117	79	7	390	34	4	27	33	1.78
14054541--14055034	176	2.8	174	79	10	501	34	4	27	33	1.77
14054950--14055012	30	2.1	30	88	5	92	38	6	23	31	1.80
14054963--14055034	30	2.4	30	83	0	81	36	6	25	31	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14056140--14056181	3	13.7	3	85	5	57	28	2	2	66	1.16
14056351--14056420	6	12.2	6	69	19	51	54	1	1	42	1.18
14056354--14056422	29	2.4	28	88	7	95	55	1	1	42	1.18
14056351--14056420	17	4.4	17	72	22	71	54	1	1	42	1.18
14056371--14056402	11	2.8	12	95	4	57	59	0	0	40	0.97
14068629--14068674	23	2.0	23	100	0	92	43	13	17	26	1.85
14068633--14068690	23	2.5	23	88	0	80	50	12	15	22	1.77
14072627--14073108	30	16.5	30	71	16	277	34	3	27	34	1.75
14072627--14073107	58	8.2	59	78	8	414	34	3	27	34	1.76
14072782--14073086	87	3.5	86	74	12	230	32	4	27	35	1.77
14072994--14073151	30	5.4	30	72	15	107	37	6	22	32	1.81
14074276--14074323	3	15.7	3	86	4	69	29	2	2	66	1.14
14074278--14074337	19	3.2	19	83	6	52	31	3	3	61	1.28
14074492--14074561	6	12.2	6	69	19	51	54	1	1	42	1.18
14074495--14074563	29	2.4	28	88	7	95	55	1	1	42	1.18
14074492--14074561	17	4.4	17	72	22	71	54	1	1	42	1.18
14074512--14074543	11	2.8	12	95	4	57	59	0	0	40	0.97
14077734--14077803	6	12.0	6	73	11	65	40	1	2	55	1.23
14077734--14077803	17	4.4	17	77	18	78	40	1	2	55	1.23
14079660--14079785	28	4.4	28	79	5	126	38	25	2	33	1.69
14079898--14079959	29	2.1	29	85	11	83	33	27	11	27	1.91
14085964--14086114	49	3.1	49	82	0	176	38	23	27	10	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14086518--14087529	204	4.9	205	91	1	1523	34	19	24	22	1.96
14086518--14087529	409	2.5	408	90	1	1546	34	19	24	22	1.96
14087153--14087319	86	2.0	85	84	3	219	35	17	24	22	1.95
14089703--14089889	29	6.5	29	74	14	102	36	25	4	33	1.76
14089672--14089868	29	6.8	28	76	11	139	37	24	4	33	1.76
14089732--14089870	57	2.4	57	87	6	190	37	26	2	33	1.69
14128597--14128626	15	1.9	16	93	6	53	70	23	0	6	1.11
14128770--14128832	24	2.6	24	84	0	90	49	11	14	25	1.76
14170275--14170653	29	12.8	29	72	16	156	35	2	26	35	1.69
14170256--14170382	59	2.2	57	79	9	139	36	4	24	34	1.77
14170276--14170642	59	6.2	58	82	7	384	36	1	26	35	1.68
14170287--14170739	117	3.9	116	81	7	451	34	2	26	36	1.70
14170276--14170707	59	7.4	59	82	7	368	35	2	26	35	1.69
14170658--14170720	30	2.1	30	93	0	108	34	4	26	33	1.78
14170666--14170738	30	2.4	30	88	0	101	28	4	27	39	1.75
14172661--14172705	18	2.5	18	85	0	63	57	2	0	40	1.11
14173075--14173525	209	2.2	209	85	2	584	22	23	17	35	1.95
14183797--14183892	23	4.2	23	86	4	104	25	20	11	42	1.85
14192024--14192474	209	2.2	209	85	1	591	35	17	23	23	1.95
14192861--14192891	16	2.0	15	93	6	53	58	3	0	38	1.15
14192854--14192900	22	2.2	21	85	11	60	61	4	0	34	1.15
14194798--14195229	30	14.8	29	66	16	144	36	27	2	33	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14194816--14195222	29	13.9	29	74	13	243	35	28	2	33	1.71
14194894--14195260	59	6.2	57	85	4	421	35	27	1	35	1.68
14194885--14195249	117	3.1	117	86	4	493	35	28	1	33	1.68
14195124--14195266	29	4.9	29	66	25	70	33	25	2	37	1.71
14199402--14199495	22	4.2	23	87	5	102	23	21	11	43	1.85
14199402--14199473	23	3.2	23	84	7	85	23	22	11	43	1.85
14202550--14202608	21	2.8	20	78	16	66	13	3	6	76	1.12
14220199--14220272	29	2.5	30	77	16	75	35	5	24	35	1.78
14220255--14220562	29	10.6	29	69	13	120	34	1	26	36	1.68
14220200--14220562	58	6.2	58	77	6	272	34	2	26	36	1.71
14220255--14220644	173	2.2	173	80	8	400	34	2	27	35	1.71
14220314--14220662	30	12.1	29	71	13	172	33	2	27	36	1.71
14220200--14220630	58	7.4	58	76	10	271	34	3	26	36	1.72
14221816--14221844	10	3.0	10	95	5	51	31	0	6	62	1.22
14222988--14223434	209	2.1	209	85	1	583	23	22	17	36	1.94
14231575--14231636	23	2.7	23	92	0	97	48	11	17	22	1.79
14231576--14231648	23	3.2	23	86	3	94	45	10	19	24	1.82
14231616--14231660	23	2.0	23	82	8	56	46	8	22	22	1.79
14235515--14235821	59	5.3	56	74	11	248	34	2	28	35	1.71
14235517--14235886	29	12.8	28	70	18	190	34	3	27	35	1.73
14235515--14235886	58	6.4	58	73	12	248	34	3	27	34	1.73
14235612--14235925	30	10.7	30	70	14	136	34	4	26	35	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14237028--14237089	3	20.7	3	88	0	79	35	1	3	59	1.23
14237286--14237329	17	2.6	17	82	10	54	56	2	0	40	1.11
14237263--14237331	29	2.4	28	83	7	77	52	1	1	44	1.19
14237280--14237311	11	2.8	12	95	4	57	59	0	0	40	0.97
14240179--14240271	12	8.1	11	83	7	62	39	0	4	55	1.19
14240192--14240276	6	14.5	6	82	4	111	41	0	3	55	1.17
14240175--14240281	29	3.7	29	96	0	187	37	0	4	57	1.19
14241050--14241095	18	2.4	19	79	17	51	63	0	6	30	1.20
14249678--14249738	24	2.5	24	83	0	77	50	11	13	24	1.74
14264627--14264671	18	2.3	18	85	14	54	60	26	2	11	1.42
14281197--14281711	29	17.6	28	68	19	225	33	3	27	35	1.73
14281191--14281800	58	10.4	58	76	11	457	33	3	27	35	1.74
14281716--14281796	30	2.7	30	90	0	117	30	3	27	38	1.74
14283710--14283757	18	2.8	16	87	9	60	47	0	2	50	1.12
14283727--14283792	6	11.0	6	74	6	62	54	1	0	43	1.09
14283727--14283780	24	2.2	24	87	6	74	51	1	0	46	1.11
14283709--14283792	42	2.0	41	88	2	123	52	1	1	45	1.16
14288937--14289429	29	16.9	31	65	21	115	34	3	28	34	1.73
14288937--14289481	30	18.7	30	66	18	188	34	3	27	34	1.73
14288933--14289485	59	9.5	56	75	12	392	34	3	28	33	1.73
14288998--14289045	25	1.9	25	87	8	71	35	2	25	37	1.68
14288998--14289045	26	1.9	24	84	16	62	35	2	25	37	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14288938--14289497	118	4.8	117	80	6	536	35	3	27	33	1.74
14289360--14289498	30	4.7	30	73	16	87	35	5	25	32	1.80
14290626--14290709	3	27.7	3	86	2	105	34	2	3	59	1.28
14290879--14290948	6	12.2	6	69	19	51	54	1	1	42	1.18
14290882--14290950	29	2.4	28	88	7	95	55	1	1	42	1.18
14290879--14290948	17	4.4	17	72	22	71	54	1	1	42	1.18
14290899--14290930	11	2.8	12	95	4	57	59	0	0	40	0.97
14311069--14311113	18	2.3	18	85	14	54	60	26	2	11	1.42
14340244--14340885	322	2.0	322	96	0	1178	32	13	15	38	1.87
14350239--14350878	320	2.0	321	95	0	1158	32	13	15	38	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132