genome.fa.s12.2.7.7.80.10.50.1000.54.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  54  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15093193--15093236	23	1.9	23	86	9	63	61	0	9	29	1.27
15094992--15095433	207	2.1	210	86	3	599	22	23	16	37	1.93
15095375--15095464	37	2.5	37	85	1	119	24	24	14	36	1.93
15095168--15095521	121	2.9	124	71	12	334	24	23	15	36	1.94
15095374--15096046	198	3.3	198	79	5	695	24	20	17	36	1.94
15095565--15095677	37	3.1	37	88	0	172	24	21	19	34	1.96
15095616--15096008	209	1.9	209	82	2	502	24	20	17	37	1.94
15095817--15096113	161	1.8	161	84	2	409	25	22	16	36	1.94
15099879--15099910	16	2.0	16	100	0	64	31	6	25	37	1.81
15126218--15126242	12	2.1	12	100	0	50	44	24	0	32	1.54
15138706--15138762	17	3.4	16	76	11	60	14	19	12	54	1.71
15145576--15145641	16	3.7	16	68	24	51	36	9	7	46	1.64
15149703--15149737	15	2.3	15	90	0	52	82	5	0	11	0.82
15153132--15153161	11	2.7	11	94	0	51	6	20	26	46	1.75
15155554--15155657	36	2.9	36	91	0	154	35	12	26	25	1.92
15156326--15156393	21	3.3	21	85	2	84	29	11	29	29	1.92
15163855--15163889	15	2.3	15	90	0	52	14	22	2	60	1.48
15177648--15177712	26	2.5	26	87	2	105	32	26	3	38	1.72
15182014--15182078	26	2.5	26	92	2	114	32	27	3	36	1.72
15183349--15183397	22	2.2	22	85	0	62	28	30	16	24	1.96
15192546--15192588	17	2.4	18	85	11	54	16	20	18	44	1.87
15196397--15196893	270	1.8	272	88	2	768	28	15	23	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15201540--15201678	70	2.0	70	94	0	242	24	17	23	35	1.95
15201688--15201738	21	2.4	21	93	0	93	19	39	25	15	1.91
15210039--15210088	18	2.8	18	81	9	57	2	26	0	72	0.96
15210036--15210092	15	3.6	15	84	13	78	1	24	0	73	0.92
15210036--15210090	16	3.2	18	77	12	62	1	25	0	72	0.94
15238009--15238165	43	3.7	43	85	8	180	26	24	9	39	1.86
15245180--15245224	13	3.5	13	80	19	58	46	0	0	53	1.00
15246768--15246817	3	17.0	3	91	4	84	66	0	2	32	1.03
15248058--15248288	43	5.5	40	79	6	183	36	11	25	26	1.90
15248099--15248288	85	2.2	85	84	2	256	36	11	25	26	1.89
15248824--15249016	43	4.5	43	87	0	271	27	25	11	35	1.90
15248815--15249016	86	2.4	86	89	1	309	28	25	11	35	1.90
15257595--15257817	43	5.3	41	78	8	184	35	11	27	25	1.91
15257597--15257817	85	2.6	84	80	7	216	35	11	28	24	1.90
15258377--15258428	21	2.5	21	81	6	61	32	15	25	26	1.95
15258992--15259131	72	1.9	72	89	0	217	24	15	19	40	1.90
15271767--15271804	2	19.0	2	100	0	76	0	50	0	50	1.00
15273519--15273561	18	2.2	19	84	12	52	60	16	0	23	1.35
15275660--15275699	21	1.9	21	89	0	62	40	5	17	37	1.72
15275869--15275927	21	2.8	21	87	7	84	59	0	1	38	1.08
15275872--15275914	9	4.4	9	78	16	50	55	0	2	41	1.12
15275853--15275924	30	2.5	28	78	15	76	59	0	1	38	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15276304--15276338	17	2.1	16	89	5	52	82	0	11	5	0.82
15276377--15276402	13	2.0	13	100	0	52	61	7	7	23	1.49
15277641--15277683	14	3.1	15	80	12	56	65	0	0	34	0.93
15277695--15277739	23	2.0	23	95	0	81	48	6	11	33	1.65
15283268--15283292	12	2.1	12	100	0	50	24	8	8	60	1.52
15284918--15284952	17	2.1	17	94	0	61	48	11	2	37	1.54
15289035--15289073	20	2.0	20	89	0	60	25	0	2	71	0.98
15292894--15293067	81	2.1	81	92	0	294	30	28	17	23	1.97
15294780--15294831	21	2.5	21	78	9	54	63	7	3	25	1.38
15294870--15294907	15	2.6	15	83	4	51	81	0	2	15	0.80
15295071--15295113	16	2.8	16	82	3	52	74	9	0	16	1.06
15295098--15295145	24	1.9	25	84	16	64	64	10	2	22	1.35
15296006--15296585	45	12.8	45	78	4	493	28	15	25	31	1.96
15296006--15296585	181	3.2	179	79	5	589	28	15	25	31	1.96
15306851--15306891	11	3.9	11	87	9	59	24	0	2	73	0.96
15306850--15306895	11	4.4	11	81	10	51	21	0	2	76	0.90
15307578--15307629	18	2.9	18	85	0	68	23	26	21	28	1.99
15308528--15308564	19	1.9	19	100	0	74	37	27	13	21	1.91
15318539--15318588	13	3.6	13	83	8	55	76	6	2	16	1.08
15318540--15318582	17	2.6	17	82	7	54	74	6	2	16	1.14
15318635--15318676	15	2.8	15	82	10	50	73	4	2	19	1.12
15318916--15318976	27	2.4	27	81	8	74	39	8	11	40	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15320691--15320724	11	3.1	11	82	0	50	17	5	0	76	0.98
15330042--15330147	36	2.9	36	72	8	90	41	21	7	29	1.80
15333605--15333651	24	2.0	24	87	8	69	48	6	14	29	1.69
15335829--15335890	17	3.6	17	77	12	56	58	12	11	17	1.63
15335852--15335890	18	2.1	19	86	13	55	61	10	12	15	1.56
15342418--15342463	18	2.6	18	82	6	58	23	21	17	36	1.94
15344068--15344114	24	2.0	24	87	8	69	48	10	14	25	1.76
15345511--15345615	35	2.9	36	85	4	131	36	15	25	22	1.93
15346272--15346323	21	2.5	21	80	0	59	23	17	23	36	1.95
15350692--15350721	3	10.0	3	100	0	60	33	0	0	66	0.92
15353368--15353395	2	14.0	2	100	0	56	50	0	0	50	1.00
15357832--15357872	20	2.1	19	90	4	64	0	31	7	60	1.24
15361537--15361900	79	4.6	79	83	2	424	35	25	16	22	1.95
15363785--15363856	36	2.0	36	94	0	126	31	12	12	43	1.80
15365282--15365374	10	9.4	10	67	23	54	41	0	2	55	1.11
15365234--15365393	59	2.6	57	82	13	171	42	1	2	53	1.22
15370671--15370721	21	2.4	21	80	9	59	19	29	7	43	1.79
15375390--15375707	59	5.4	58	86	5	410	32	2	31	34	1.70
15377373--15377452	17	4.5	17	75	16	72	50	1	0	48	1.08
15379219--15379257	14	2.7	14	88	11	53	48	20	7	23	1.75
15399353--15399395	2	21.5	2	100	0	86	51	0	0	48	1.00
15406121--15406227	56	1.9	57	90	1	171	39	4	20	35	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15406123--15406227	27	3.8	28	84	3	140	39	4	20	36	1.73
15408062--15408125	32	2.0	32	93	6	112	28	21	15	34	1.94
15413876--15413909	18	1.9	18	88	5	52	29	0	5	64	1.17
15413936--15413974	17	2.2	17	86	9	51	48	7	0	43	1.31
15413996--15414029	17	1.9	17	88	5	50	67	0	0	32	0.91
15415634--15415680	6	8.2	6	90	9	80	34	0	0	65	0.93
15417485--15417620	30	4.6	30	85	4	177	37	17	5	38	1.74
15417614--15417715	29	3.5	29	79	9	127	37	26	2	33	1.72
15417614--15417705	30	3.1	30	76	20	120	38	28	3	30	1.73
15417594--15417778	59	3.2	58	83	9	182	34	25	3	36	1.72
15417614--15417797	58	3.2	58	86	5	248	35	26	3	34	1.75
15417613--15417797	29	6.3	29	69	13	121	35	26	3	34	1.75
15417614--15417841	117	1.9	117	80	3	262	32	26	6	34	1.81
15429503--15430223	92	7.9	92	88	1	1058	35	19	17	27	1.94
15429503--15430224	183	4.0	183	90	1	1072	35	19	17	27	1.94
15430497--15430571	6	13.2	6	76	8	68	37	1	2	58	1.20
15430489--15430571	11	7.4	11	80	8	69	37	1	2	59	1.19
15430489--15430574	17	5.1	17	80	8	95	37	1	2	59	1.18
15430502--15430561	23	2.7	23	84	2	77	40	1	1	56	1.19
15430941--15430982	16	2.6	16	84	0	57	71	14	4	9	1.28
15432624--15432676	21	2.5	21	78	6	63	32	24	13	30	1.93
15433336--15433439	36	2.9	36	86	0	127	21	25	17	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15433696--15433733	20	1.9	20	84	10	51	28	18	2	50	1.61
15445047--15445081	18	1.9	18	88	0	52	8	34	5	51	1.56
15454431--15454487	30	1.9	30	85	0	78	12	14	21	52	1.73
15455765--15455827	19	3.4	18	75	14	56	25	1	3	69	1.12
15455762--15455819	12	4.6	13	71	16	50	27	1	1	68	1.08
15455789--15455827	12	3.1	12	88	7	51	30	0	2	66	1.05
15460197--15460243	21	2.2	21	100	0	94	19	21	19	40	1.92
15461510--15461569	15	3.7	16	76	14	52	31	10	13	45	1.76
15461522--15461571	15	3.2	15	77	8	55	32	8	14	46	1.73
15463230--15463280	21	2.7	18	75	18	59	52	0	1	45	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132