genome.fa.s12.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  35  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9453462--9454063	244	2.5	243	85	2	760	37	18	25	18	1.93
9458075--9458612	268	2.0	268	99	0	1058	40	21	10	27	1.86
9459395--9459448	9	6.0	9	79	14	58	50	7	0	42	1.30
9464575--9464614	12	3.2	12	83	16	55	32	0	0	67	0.91
9464575--9464637	14	4.7	13	75	21	51	31	0	3	65	1.09
9465339--9465396	30	1.9	31	89	10	93	31	0	18	50	1.48
9469782--9469834	21	2.5	21	100	0	106	66	13	11	9	1.46
9471144--9471200	25	2.4	24	82	5	62	52	5	3	38	1.41
9471154--9471200	25	1.9	25	86	4	69	51	6	4	38	1.47
9475337--9475369	2	16.5	2	100	0	66	48	0	0	51	1.00
9476326--9476543	24	8.7	26	74	8	164	38	14	26	20	1.91
9476300--9476514	50	4.3	50	87	0	286	37	14	26	21	1.92
9476403--9476584	74	2.5	74	83	3	206	37	16	26	18	1.92
9476300--9476543	50	4.9	49	79	8	174	38	14	26	20	1.91
9476335--9476543	100	2.1	99	82	3	249	39	14	25	20	1.91
9478114--9478256	73	2.0	73	94	0	250	39	11	9	39	1.74
9478639--9478784	70	2.1	70	93	0	247	33	24	11	30	1.91
9479694--9479779	22	4.1	22	72	17	67	37	2	2	58	1.24
9479710--9479759	17	2.9	17	87	3	73	38	0	2	60	1.09
9479705--9479773	5	12.6	5	76	14	57	40	1	1	56	1.17
9479704--9479772	11	6.2	11	75	12	61	42	1	1	55	1.18
9479695--9479761	17	3.9	17	77	11	66	37	1	2	58	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9479723--9479770	17	2.8	17	87	0	51	39	2	2	56	1.23
9479704--9479772	6	12.3	6	79	11	58	42	1	1	55	1.18
9480593--9480700	6	18.0	6	73	14	80	49	1	1	47	1.23
9480601--9480664	31	2.1	31	88	5	94	43	1	3	51	1.26
9480593--9480663	11	6.6	11	70	20	53	42	1	2	53	1.24
9480864--9480894	15	2.1	15	100	0	62	19	54	12	12	1.70
9481985--9482470	163	3.0	162	92	3	782	26	15	11	46	1.80
9482555--9482869	58	5.4	59	90	2	485	31	27	5	35	1.79
9482558--9482841	29	9.8	29	67	11	136	30	26	5	36	1.80
9494833--9495190	68	5.2	68	94	1	610	34	17	20	27	1.95
9494994--9495363	175	2.1	174	93	2	636	33	17	21	28	1.95
9494838--9495530	136	5.1	135	87	8	471	34	16	21	27	1.95
9495170--9495608	68	6.5	68	95	0	772	34	16	20	28	1.95
9494930--9495431	243	2.1	242	95	1	900	34	16	21	27	1.95
9494858--9495499	311	2.1	310	96	1	1180	33	17	21	27	1.95
9495894--9496001	6	18.0	6	75	14	89	49	0	1	48	1.18
9495898--9495962	17	4.1	15	81	15	78	43	0	3	53	1.16
9495902--9495965	31	2.1	31	91	5	103	43	0	3	53	1.16
9495894--9495964	11	6.6	11	73	20	62	42	0	2	54	1.14
9495894--9496001	42	2.6	41	80	7	110	49	0	1	48	1.18
9497270--9497756	163	3.0	162	93	2	791	25	14	12	47	1.80
9497841--9498274	59	7.4	59	92	1	696	31	27	5	36	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9497841--9498274	117	3.7	118	91	2	705	31	27	5	36	1.78
9497841--9498274	176	2.5	176	91	1	721	31	27	5	36	1.78
9499545--9499586	15	2.7	16	81	3	50	61	2	0	35	1.09
9500679--9501021	59	5.8	58	84	4	397	30	29	5	34	1.80
9500679--9501021	117	2.9	117	82	5	417	30	29	5	34	1.80
9500679--9501021	176	1.9	176	86	2	483	30	29	5	34	1.80
9501032--9501091	28	2.2	27	81	3	66	35	25	8	31	1.85
9502479--9502547	35	2.0	35	82	0	84	18	26	18	36	1.94
9502512--9502730	24	9.1	24	81	0	231	21	25	15	36	1.93
9508817--9508870	20	2.8	20	80	2	65	61	7	0	31	1.24
9508865--9508891	14	1.9	14	100	0	54	62	0	0	37	0.95
9511656--9511705	3	16.7	3	100	0	100	68	0	0	32	0.90
9511852--9511885	16	2.1	16	100	0	68	32	17	5	44	1.73
9511993--9512159	43	4.0	42	66	11	99	36	20	19	23	1.95
9514724--9514773	25	2.0	25	84	7	66	32	0	0	68	0.90
9522031--9523669	845	1.9	838	89	3	2408	33	14	13	38	1.85
9524667--9524824	85	1.9	85	87	2	237	21	24	15	37	1.93
9524541--9525677	209	5.4	209	88	1	1552	22	21	17	38	1.93
9524875--9525042	85	2.0	85	83	4	214	24	23	16	36	1.94
9524645--9525677	416	2.5	418	90	1	1610	22	21	17	38	1.93
9525866--9526248	49	7.9	49	75	4	211	17	31	16	34	1.92
9525885--9526058	92	1.9	92	84	2	233	17	31	14	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9525934--9526248	99	3.3	98	79	11	314	18	32	15	33	1.93
9526745--9526971	100	2.2	100	84	3	285	38	11	23	26	1.89
9527286--9527319	10	3.3	10	88	8	50	2	11	0	85	0.71
9531112--9531177	32	2.1	32	94	0	114	46	12	12	28	1.77
9531981--9532096	58	2.0	58	100	0	232	63	15	1	18	1.39
9534090--9534114	7	3.6	7	100	0	50	0	12	0	88	0.53
9535898--9535999	49	2.1	49	83	3	125	61	6	2	28	1.36
9540351--9540397	21	2.2	21	92	0	76	27	14	23	34	1.94
9541855--9541909	24	2.3	24	87	0	74	25	16	10	47	1.79
9542697--9542816	60	2.0	61	85	1	161	36	7	23	32	1.83
9550793--9550849	2	28.5	2	100	0	114	50	0	0	49	1.00
9558853--9558938	35	2.6	32	74	18	84	27	8	17	46	1.76
9564125--9564166	17	2.3	18	80	8	50	33	0	7	59	1.25
9564193--9564264	25	2.7	26	77	14	67	58	2	1	37	1.21
9564239--9564309	22	3.2	22	72	18	67	63	1	1	33	1.12
9564188--9564305	44	2.7	43	78	13	125	59	2	0	37	1.17
9564272--9564314	22	2.0	22	85	0	59	67	0	0	32	0.91
9566692--9566870	39	4.5	39	74	6	137	37	21	15	25	1.92
9566691--9566870	79	2.3	79	79	0	198	37	21	15	25	1.92
9567690--9567754	29	2.2	31	83	10	82	49	3	3	44	1.33
9571723--9571826	17	6.1	18	76	5	74	52	4	1	40	1.33
9571734--9571826	17	5.5	17	78	0	105	54	5	2	37	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9572459--9572622	78	2.1	78	82	2	195	28	18	29	23	1.98
9572799--9573168	92	4.0	92	94	0	632	32	18	16	32	1.93
9573311--9573621	50	6.3	49	77	4	277	12	24	23	39	1.90
9573399--9573524	48	2.6	48	82	1	153	12	26	23	38	1.90
9573308--9573621	146	2.1	149	84	4	395	12	24	23	39	1.90
9574787--9574812	12	2.2	12	100	0	52	0	15	0	84	0.62
9579479--9579507	2	14.5	2	100	0	58	51	0	0	48	1.00
9580063--9580102	21	1.9	21	84	0	53	55	0	5	40	1.22
9580063--9580108	16	2.9	15	81	9	56	56	0	6	36	1.25
9591981--9592083	36	2.7	38	80	7	129	37	16	27	18	1.92
9591980--9592086	37	2.9	36	85	4	142	37	17	27	17	1.93
9592625--9592699	21	3.6	21	90	0	105	18	14	26	40	1.90
9597604--9597941	168	2.0	168	97	0	640	36	11	10	42	1.75
9607653--9607686	17	1.9	18	94	5	61	41	26	2	29	1.70
9611345--9611379	16	2.2	16	89	0	52	60	2	0	37	1.12
9611333--9611391	27	2.2	25	79	8	64	61	5	0	33	1.18
9614736--9614839	48	2.2	48	83	0	145	29	18	22	29	1.97
9614994--9615082	38	2.3	39	78	5	101	40	13	13	32	1.83
9620402--9620480	40	2.0	40	100	0	158	37	11	10	40	1.75
9631536--9631725	58	3.3	58	78	8	197	37	5	22	34	1.77
9631478--9631725	117	2.1	117	80	5	270	39	5	22	32	1.78
9631571--9631737	29	5.7	28	70	16	106	37	4	22	35	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9633020--9633067	3	16.0	3	100	0	96	33	0	0	66	0.92
9634413--9635295	92	9.6	92	92	1	1349	33	18	15	32	1.92
9646890--9646955	2	33.0	2	100	0	132	50	0	50	0	1.00
9647557--9647646	45	2.0	45	86	2	128	43	20	11	25	1.84
9651545--9652015	30	16.0	29	76	13	360	37	3	23	35	1.73
9651545--9652005	59	7.8	59	77	12	373	37	3	22	35	1.72
9653791--9653882	6	16.0	6	71	13	68	51	1	1	46	1.15
9653791--9653882	17	5.4	17	81	2	112	51	1	1	46	1.15
9653790--9653869	23	3.2	22	70	23	61	48	1	1	48	1.17
9653793--9653848	29	1.9	29	85	7	78	51	1	1	44	1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132