genome.fa.s12.2.7.7.80.10.50.1000.46.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  46  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12554594--12555109	58	9.0	57	72	13	314	35	27	3	33	1.73
12563544--12563568	11	2.3	11	100	0	50	80	0	0	20	0.72
12577612--12577674	24	2.6	24	84	0	81	25	15	11	47	1.79
12622546--12622602	24	2.4	24	84	0	78	47	10	15	26	1.78
12622558--12622608	24	2.1	24	88	0	75	52	11	13	21	1.72
12632163--12632207	18	2.3	18	85	14	54	60	26	2	11	1.42
12636714--12636738	11	2.3	11	100	0	50	20	0	0	80	0.72
12643842--12644941	590	1.9	591	94	0	1925	32	16	17	33	1.93
12647274--12647704	29	14.8	27	70	18	203	34	3	27	35	1.73
12647274--12647695	232	1.8	232	86	4	618	34	3	27	34	1.73
12647274--12647795	59	9.0	60	75	11	371	33	3	28	35	1.73
12647711--12647791	30	2.7	30	88	0	108	30	2	27	39	1.70
12647274--12647785	232	2.2	230	81	8	583	33	3	27	35	1.73
12649723--12649824	6	17.0	6	72	8	82	53	1	0	44	1.11
12649725--12649824	18	5.6	17	80	9	110	55	2	0	43	1.11
12649728--12649824	36	2.7	36	96	0	176	54	2	0	43	1.11
12650187--12650841	209	3.1	208	87	1	900	22	22	18	36	1.95
12706433--12706550	59	2.0	59	81	6	141	36	10	26	27	1.88
12706511--12706607	29	3.3	29	75	4	97	34	4	24	37	1.75
12708317--12708359	17	2.6	18	85	14	65	60	4	0	34	1.17
12708658--12709669	204	4.9	206	88	1	1394	22	23	19	34	1.96
12710060--12710214	49	3.1	49	77	0	157	14	27	18	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12716398--12716480	29	2.9	29	79	10	82	33	4	24	37	1.77
12718356--12718408	6	9.0	6	76	12	56	54	1	1	41	1.22
12718376--12718409	11	3.0	11	87	8	50	58	2	0	38	1.13
12724805--12724944	59	2.4	59	76	9	142	34	8	25	31	1.86
12724974--12725104	29	4.5	29	72	12	90	34	4	19	41	1.72
12726912--12726967	6	9.7	6	78	7	62	57	3	0	39	1.16
12726901--12726967	17	4.2	17	76	20	72	58	2	1	37	1.23
12728071--12728102	11	2.8	12	95	4	57	40	0	0	59	0.97
12728053--12728096	17	2.6	18	85	10	65	38	0	2	59	1.10
12728051--12728119	29	2.4	28	85	7	86	40	1	1	56	1.17
12728290--12728342	3	17.7	3	86	0	61	58	3	1	35	1.27
12729614--12729685	30	2.4	29	80	8	83	37	23	4	34	1.74
12729708--12729882	29	6.0	28	73	15	131	34	29	1	34	1.65
12729706--12729882	30	6.0	30	72	15	145	33	30	1	34	1.65
12729706--12729881	59	3.0	58	85	3	210	34	30	1	34	1.65
12734513--12734674	29	5.6	29	70	12	91	30	4	28	36	1.77
12734494--12734663	58	2.9	59	78	9	156	30	3	27	38	1.73
12734556--12734664	30	3.7	30	71	10	91	32	3	24	39	1.73
12736528--12736586	18	3.4	17	77	15	50	55	5	1	37	1.32
12736538--12736598	29	2.1	28	87	3	86	60	6	0	32	1.22
12736528--12736593	17	3.8	16	78	11	60	56	6	1	36	1.34
12736542--12736597	17	3.2	17	79	2	67	57	7	0	35	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12744087--12744156	6	12.2	6	69	19	51	42	1	1	54	1.18
12744105--12744136	11	2.8	12	95	4	57	40	0	0	59	0.97
12744087--12744130	17	2.6	18	85	10	65	38	0	2	59	1.10
12744078--12744136	11	5.7	11	73	20	56	40	1	1	55	1.20
12744087--12744156	17	4.4	17	76	22	62	42	1	1	54	1.18
12744079--12744153	29	2.6	28	85	8	98	42	2	1	53	1.23
12744326--12744397	3	23.7	3	84	2	81	58	4	2	34	1.32
12745510--12745657	30	5.0	30	76	18	89	35	25	4	35	1.77
12745535--12745920	29	13.7	27	67	21	116	33	28	4	33	1.78
12745601--12745933	59	5.9	59	74	12	315	33	29	4	32	1.77
12745532--12745759	30	7.7	30	71	14	127	33	28	4	33	1.77
12745718--12745930	54	4.1	49	71	15	151	35	28	4	31	1.77
12745655--12745956	107	2.7	110	82	5	344	33	29	4	32	1.77
12745765--12745933	54	2.9	58	77	11	204	34	28	4	31	1.76
12749879--12749950	23	3.1	23	84	6	92	25	19	11	44	1.83
12749890--12749951	23	2.7	23	94	0	106	22	17	12	46	1.82
12756839--12756934	23	4.2	23	86	4	113	25	18	11	44	1.83
12762973--12763419	209	2.1	209	85	2	601	35	17	23	23	1.95
12763784--12763829	18	2.6	18	82	0	65	41	0	2	56	1.11
12765766--12766245	29	16.5	30	71	14	150	37	27	1	33	1.68
12765860--12766284	29	14.6	29	73	15	315	36	27	1	35	1.67
12765862--12766284	59	7.2	59	85	6	490	36	26	1	35	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12765766--12766289	117	4.5	117	80	9	472	36	27	2	33	1.69
12797718--12797775	20	2.8	20	77	12	64	75	6	3	13	1.13
12824118--12824212	29	3.3	29	81	8	113	32	4	27	35	1.76
12824199--12824227	9	3.3	9	95	4	51	27	0	27	44	1.54
12824177--12824250	38	1.9	38	83	0	94	31	4	27	37	1.75
12824235--12824313	29	2.7	30	82	9	83	32	7	20	39	1.81
12826130--12826173	17	2.6	18	86	13	67	59	4	0	36	1.18
12826662--12826784	48	2.5	49	84	7	153	22	26	17	33	1.96
12826542--12826896	168	2.1	168	93	1	604	21	24	19	34	1.96
12826711--12827415	201	3.5	205	91	1	1093	22	24	19	34	1.97
12827806--12828013	49	4.2	49	80	3	200	12	27	20	39	1.88
12841058--12841102	18	2.3	18	85	14	54	60	26	2	11	1.42
12844542--12844600	21	2.8	20	78	16	66	13	3	6	76	1.12
12865427--12865492	29	2.3	29	78	5	71	27	10	28	33	1.90
12865446--12865549	29	3.6	29	71	14	88	35	8	25	30	1.86
12865534--12865699	29	5.8	28	78	6	145	34	3	25	36	1.74
12865534--12865699	57	2.9	57	81	7	194	34	3	25	36	1.74
12865534--12865711	86	2.1	87	84	5	227	34	5	25	34	1.78
12865534--12865718	29	6.4	28	75	10	142	35	4	24	35	1.77
12866544--12866585	20	2.1	20	86	8	59	38	2	0	59	1.10
12866539--12866589	18	2.7	18	74	17	50	37	3	0	58	1.16
12867401--12867444	17	2.6	18	86	13	67	59	4	0	36	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12867384--12867429	23	2.0	24	86	4	67	54	4	2	39	1.32
12867381--12867444	6	11.0	6	72	12	53	54	3	1	40	1.25
12867744--12868755	204	4.9	206	90	1	1421	23	23	18	34	1.96
12869146--12869275	49	2.7	48	77	7	138	15	28	17	38	1.90
12870837--12870902	29	2.3	29	79	10	73	28	9	28	33	1.88
12873366--12873459	30	3.2	30	70	18	88	38	5	26	29	1.78
12873470--12873735	30	8.9	30	92	1	417	36	2	23	37	1.68
12875658--12875762	6	17.0	6	75	12	79	45	1	0	51	1.18
12875673--12875762	31	3.0	30	77	9	85	47	2	0	50	1.13
12875698--12875772	17	4.2	17	76	15	71	52	4	0	44	1.20
12876090--12876713	69	8.9	69	81	9	705	30	19	15	34	1.93
12876370--12876445	39	1.9	39	91	0	125	23	19	18	38	1.93
12888815--12888927	59	1.9	58	85	5	156	38	7	27	27	1.82
12888926--12889202	30	9.2	30	89	0	428	36	3	23	37	1.72
12894975--12895114	59	2.4	59	83	7	176	32	10	25	30	1.90
12895123--12895274	29	5.2	29	73	12	98	34	5	19	40	1.74
12895123--12895258	29	4.7	30	75	9	104	33	4	22	40	1.74
12897103--12897172	6	12.0	6	73	11	56	55	2	2	38	1.29
12897140--12897172	17	1.9	17	93	0	57	60	3	3	33	1.27
12900042--12900073	11	2.8	12	95	4	57	40	0	0	59	0.97
12900024--12900067	17	2.6	18	85	10	65	38	0	2	59	1.10
12900263--12900315	3	17.7	3	86	0	52	56	3	3	35	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12901407--12901930	30	17.9	29	70	14	210	34	27	3	34	1.74
12901497--12901930	59	7.4	59	76	8	336	34	26	3	35	1.74
12901506--12901956	117	3.8	118	80	4	491	33	26	3	35	1.75
12910779--12911436	209	3.2	208	85	1	773	37	18	21	22	1.94
12911805--12911868	18	3.6	17	82	4	74	42	0	3	54	1.16
12911805--12911886	18	4.6	18	82	7	71	45	1	2	51	1.22
12911838--12911870	6	5.5	6	86	13	50	51	0	0	48	1.00
12913796--12913864	30	2.3	30	85	2	86	36	30	5	27	1.80
12913818--12913880	30	2.1	30	93	0	108	34	25	4	34	1.77
12913894--12914380	29	16.6	29	71	13	277	34	27	2	35	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132