genome.fa.s12.2.7.7.80.10.50.1000.105.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  105  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32066182--32066244	23	2.9	21	76	9	63	41	3	1	53	1.26
32070887--32070934	9	5.1	9	80	9	51	37	0	2	60	1.09
32070885--32070932	18	2.6	18	83	6	60	41	0	2	56	1.11
32072173--32072216	2	22.0	2	100	0	88	0	0	50	50	1.00
32074160--32074194	17	2.0	18	88	5	54	68	5	0	25	1.11
32076035--32076112	18	4.2	18	72	16	70	30	1	1	66	1.07
32081418--32081480	28	2.2	29	82	2	74	38	3	26	31	1.72
32081418--32081848	29	14.8	29	73	11	222	36	2	25	35	1.69
32081446--32081721	87	3.2	89	80	5	280	36	2	26	34	1.71
32081440--32081813	117	3.2	115	78	7	321	36	2	25	35	1.69
32081723--32081829	30	3.6	29	82	8	119	39	0	22	37	1.61
32083988--32084554	50	11.4	50	73	7	341	18	30	16	34	1.94
32083988--32084596	99	6.1	98	78	1	509	18	29	17	34	1.94
32085686--32085750	23	2.8	23	88	0	85	27	20	13	38	1.90
32085662--32085754	12	8.0	12	75	7	84	25	16	13	44	1.85
32088791--32088829	20	2.1	17	86	13	51	23	5	2	69	1.21
32089945--32090004	24	2.5	24	86	2	86	41	20	18	20	1.90
32089997--32090060	24	2.7	23	90	4	101	45	18	14	21	1.85
32089943--32090060	58	2.1	57	85	1	155	44	19	16	20	1.87
32097246--32097343	30	3.3	29	80	9	110	39	1	23	35	1.62
32097369--32097535	29	5.7	30	73	12	107	35	1	25	37	1.64
32097367--32097553	58	3.2	58	74	8	182	36	2	24	37	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32097285--32097462	94	1.9	94	82	6	227	34	2	24	38	1.68
32097483--32097539	30	1.9	30	89	7	89	38	3	24	33	1.73
32097484--32097557	30	2.5	29	83	14	82	39	4	21	35	1.73
32097810--32097857	19	2.5	19	100	0	96	45	0	12	41	1.42
32100965--32101018	21	2.6	21	82	5	65	29	14	25	29	1.95
32101008--32101049	21	2.0	20	86	13	59	38	21	14	26	1.91
32103422--32103456	14	2.5	14	90	0	52	62	11	5	20	1.48
32103468--32103517	22	2.3	22	92	0	82	68	12	14	6	1.39
32104352--32104377	5	5.2	5	100	0	52	80	0	0	19	0.71
32104643--32104677	18	2.0	17	94	5	61	57	0	0	42	0.99
32106598--32106652	28	1.9	28	85	10	76	61	3	0	34	1.13
32106664--32106696	10	3.4	10	87	8	50	42	0	0	57	0.98
32113447--32113541	29	3.2	30	65	21	74	34	3	26	35	1.72
32113435--32113574	59	2.3	60	90	3	221	34	3	29	32	1.75
32113470--32113585	30	3.9	29	70	19	87	33	2	30	33	1.72
32115515--32115557	17	2.5	17	88	0	59	37	0	2	60	1.10
32115956--32116971	200	5.1	200	90	1	1553	20	22	21	35	1.96
32115948--32116936	392	2.5	395	90	2	1531	20	22	21	35	1.96
32119389--32119420	15	2.1	15	100	0	64	53	0	34	12	1.39
32128505--32128696	96	2.0	96	81	4	226	36	14	18	30	1.90
32128936--32129087	29	5.2	29	65	25	70	34	2	28	34	1.71
32128924--32129115	59	3.3	59	86	2	271	35	2	27	34	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32128956--32129114	29	5.5	29	67	26	95	35	2	28	33	1.71
32130213--32130269	19	3.0	20	79	7	55	50	1	1	45	1.22
32131479--32131620	37	3.8	37	79	3	160	40	32	14	11	1.83
32132851--32132892	17	2.3	19	84	8	52	45	7	7	40	1.59
32132970--32133134	24	6.8	24	84	2	197	24	26	18	29	1.98
32132962--32133134	48	3.6	48	82	1	220	24	26	19	30	1.98
32132972--32133113	73	2.0	72	90	1	221	23	26	19	30	1.98
32135848--32136045	59	3.4	58	85	4	272	35	1	28	34	1.67
32135898--32136052	30	5.2	30	70	18	119	33	0	29	36	1.63
32136316--32136387	32	2.3	30	83	7	90	58	6	12	22	1.58
32137115--32137146	9	3.6	9	95	0	55	28	0	9	62	1.26
32138256--32138919	201	3.3	196	84	4	832	19	22	20	37	1.94
32138811--32138999	86	2.2	85	90	3	299	20	25	19	34	1.96
32138897--32139336	199	2.2	198	90	2	666	20	23	20	35	1.96
32146362--32146484	29	4.2	29	77	12	76	30	4	27	37	1.75
32146376--32146646	29	9.2	28	75	14	178	34	4	27	33	1.76
32146387--32146557	59	2.9	58	81	12	165	33	3	28	35	1.74
32146376--32146646	88	3.1	86	81	10	284	34	4	27	33	1.76
32146467--32146666	59	3.4	57	79	12	199	35	5	26	33	1.78
32148472--32148537	11	6.0	11	75	7	62	54	3	1	40	1.25
32148471--32148533	16	3.8	16	75	6	63	52	3	1	42	1.27
32148646--32148956	137	2.3	137	88	1	446	44	16	12	27	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32148930--32148991	31	2.0	31	93	0	106	43	17	4	33	1.71
32148965--32149203	127	1.9	127	88	0	361	41	20	11	26	1.86
32150552--32150594	11	3.9	11	81	0	50	37	0	6	55	1.27
32151433--32151469	16	2.4	16	86	8	51	48	2	0	48	1.15
32158440--32158472	18	1.9	18	88	11	52	57	3	30	9	1.45
32163203--32163987	200	3.9	200	91	1	1200	36	20	22	20	1.95
32164330--32164371	11	3.9	11	81	3	50	40	0	4	54	1.21
32164332--32164393	17	3.8	17	80	6	74	40	0	4	54	1.22
32164330--32164371	22	2.0	22	85	4	59	40	0	4	54	1.21
32164336--32164408	27	2.7	27	76	0	74	43	1	4	50	1.29
32164349--32164402	16	3.3	16	79	5	54	42	1	1	53	1.22
32165204--32165268	29	2.3	29	78	7	71	46	0	4	49	1.22
32165577--32165620	18	2.5	17	78	10	52	79	2	15	2	0.93
32166282--32166420	29	4.7	30	72	16	103	37	25	0	36	1.61
32166313--32166566	59	4.3	59	82	7	270	33	28	1	35	1.69
32166304--32166423	29	4.1	29	73	19	104	37	25	0	37	1.56
32166343--32166566	30	7.6	29	67	21	94	32	29	2	35	1.70
32166338--32166566	117	1.9	118	85	7	315	31	29	2	36	1.70
32168908--32168985	3	26.0	3	97	0	147	34	0	32	33	1.58
32170933--32171451	59	8.9	59	85	2	690	35	2	29	32	1.71
32171038--32171193	29	5.4	28	65	24	74	35	2	28	33	1.71
32170935--32171451	116	4.4	118	89	2	708	35	2	29	32	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32171117--32171464	29	11.9	28	70	19	142	36	2	28	33	1.69
32173381--32173456	17	4.5	17	76	5	82	51	3	1	43	1.28
32175076--32175143	25	2.7	25	93	2	109	41	13	16	29	1.86
32179021--32179064	18	2.5	17	92	3	70	45	2	15	36	1.59
32179085--32179115	13	2.4	13	100	0	62	25	6	16	51	1.68
32180093--32180149	20	2.8	20	89	0	78	50	3	0	45	1.18
32180191--32180230	21	1.9	21	85	10	55	65	5	5	25	1.34
32180384--32180474	31	3.0	30	67	15	80	25	18	12	43	1.84
32180256--32180501	58	4.2	58	86	3	314	23	18	12	45	1.83
32180256--32180483	117	1.9	117	85	3	316	23	18	12	46	1.83
32184247--32184298	23	2.2	23	77	19	54	57	0	0	42	0.98
32184253--32184309	25	2.4	25	80	8	66	50	0	0	49	1.00
32193435--32193594	79	2.0	79	96	0	293	13	17	23	46	1.83
32194088--32194118	16	1.9	16	93	0	53	61	3	0	35	1.12
32195096--32195139	23	1.9	23	90	0	70	22	25	25	27	2.00
32199068--32199114	21	2.2	22	81	11	53	17	4	4	74	1.14
32202841--32202874	17	2.0	17	100	0	68	23	29	35	11	1.90
32205570--32205783	107	2.0	107	91	1	349	42	7	18	32	1.78
32218085--32218110	3	8.7	3	100	0	52	65	0	0	34	0.93
32224203--32224244	3	14.0	3	89	0	66	28	0	38	33	1.58
32224203--32224244	12	3.5	12	96	0	75	28	0	38	33	1.58
32234021--32234070	25	2.0	24	85	11	66	28	0	4	68	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32234728--32234758	8	3.8	8	91	8	53	51	0	0	48	1.00
32235620--32235664	7	6.4	7	97	0	81	28	28	0	42	1.56
32235593--32235664	21	3.4	21	82	1	81	25	25	2	47	1.65
32235777--32235876	52	1.9	52	87	4	148	40	2	7	51	1.41
32241165--32241191	2	13.5	2	100	0	54	48	0	0	51	1.00
32246696--32246722	11	2.5	11	100	0	54	7	7	18	66	1.40
32247234--32247271	18	2.1	18	85	9	51	52	15	7	23	1.69
32248808--32248868	27	2.3	27	91	0	95	57	11	9	21	1.62
32257382--32257415	6	5.7	6	86	13	52	85	0	14	0	0.60
32262732--32262757	6	4.3	6	100	0	52	80	0	0	19	0.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132