genome.fa.s12.2.7.7.80.10.50.1000.65.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  65  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18266917--18266969	2	27.0	2	84	3	72	49	0	1	49	1.12
18267169--18267248	22	3.5	22	86	5	97	10	27	23	38	1.87
18270448--18270497	23	2.2	23	85	0	64	42	24	18	16	1.89
18271735--18271813	41	1.9	41	85	10	108	48	1	20	30	1.58
18272062--18272112	22	2.3	22	86	0	66	49	13	23	13	1.78
18273467--18274120	218	3.0	218	95	0	1184	36	13	16	33	1.87
18277508--18277536	15	1.9	15	100	0	58	55	0	10	34	1.34
18280156--18280188	11	3.1	11	86	8	50	78	0	0	21	0.75
18280897--18281026	40	3.3	39	80	3	145	29	17	23	29	1.97
18280916--18281027	40	2.8	40	83	0	152	27	19	21	31	1.97
18281064--18281225	50	3.2	50	80	1	173	24	23	17	34	1.96
18281411--18281436	10	2.6	10	100	0	52	19	30	19	30	1.96
18292536--18292908	51	7.3	51	87	2	509	35	14	21	29	1.93
18296748--18296794	16	2.9	15	84	12	58	21	0	2	76	0.89
18296795--18296836	16	2.6	16	81	7	50	76	2	2	19	1.01
18298418--18298850	41	10.3	41	72	11	245	26	24	27	21	1.99
18298434--18298867	93	5.2	81	74	13	308	27	25	26	21	1.99
18298504--18298745	134	1.8	134	84	5	337	26	28	26	19	1.98
18298960--18299024	26	2.6	25	90	7	96	29	49	4	16	1.66
18298960--18299036	25	3.0	25	78	14	77	25	46	6	20	1.75
18299051--18299169	44	2.7	43	81	3	121	14	47	10	27	1.77
18301030--18301340	8	36.3	9	64	25	83	48	0	5	46	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18301030--18301487	49	9.4	49	92	4	734	48	0	5	45	1.27
18301030--18301487	146	3.1	145	93	3	744	48	0	5	45	1.27
18301441--18301496	18	3.2	17	75	12	51	51	0	1	46	1.11
18301030--18301487	97	4.7	97	92	4	737	48	0	5	45	1.27
18307000--18307156	66	2.4	66	85	2	217	43	16	24	15	1.86
18307142--18307193	21	2.5	21	90	0	77	32	21	44	1	1.63
18307509--18307675	43	3.9	43	96	0	298	27	25	28	17	1.98
18317307--18317337	12	2.6	12	94	0	53	70	0	0	29	0.87
18319296--18319372	21	3.7	21	75	0	73	29	25	12	31	1.93
18320068--18320507	191	2.3	191	88	0	621	27	24	19	28	1.99
18328305--18328361	15	3.5	15	71	17	51	45	0	3	50	1.18
18328393--18328434	13	2.9	14	80	13	50	45	2	0	52	1.13
18329883--18329964	42	2.0	42	90	0	128	37	4	14	42	1.67
18330533--18330862	164	2.0	165	88	2	495	50	19	13	16	1.78
18332878--18332939	29	2.0	33	84	12	87	48	1	1	48	1.21
18337649--18337721	29	2.5	30	76	14	82	49	21	15	13	1.79
18341030--18341078	21	2.3	22	86	6	66	38	12	20	28	1.89
18345735--18346185	225	2.0	226	98	0	877	26	18	21	33	1.96
18347071--18347148	30	2.6	29	85	2	93	32	3	23	41	1.72
18347140--18347205	30	2.2	30	86	0	87	36	4	16	42	1.69
18347125--18347205	30	2.7	29	81	9	83	37	4	17	40	1.71
18347569--18347617	13	3.5	14	83	10	64	24	30	0	44	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18347684--18347713	5	6.0	5	92	0	51	20	3	0	76	0.92
18347685--18347714	15	2.0	15	100	0	60	20	6	0	73	1.05
18349042--18349091	20	2.4	21	81	15	52	48	0	10	42	1.37
18351296--18351687	123	3.2	123	89	1	599	23	19	17	40	1.91
18351475--18351567	48	1.9	48	86	4	134	21	20	16	41	1.90
18351655--18351728	37	2.0	36	86	2	103	27	20	14	37	1.92
18351604--18351772	85	2.0	85	84	2	223	24	20	15	39	1.92
18351927--18352021	48	2.0	48	83	4	120	21	22	15	41	1.90
18351692--18352344	247	2.6	246	87	1	885	22	20	17	39	1.92
18351692--18352344	124	5.3	123	85	1	815	22	20	17	39	1.92
18352224--18352395	75	2.3	76	88	3	258	20	20	18	40	1.91
18352438--18352811	45	8.4	45	76	8	309	26	16	25	31	1.97
18352467--18352810	90	3.9	88	81	6	347	26	18	24	30	1.98
18352418--18352811	134	2.9	132	81	6	443	26	17	23	32	1.97
18353254--18353363	49	2.2	49	83	0	148	24	23	16	35	1.95
18353404--18353430	13	2.1	13	100	0	54	29	22	14	33	1.94
18355246--18355290	22	2.0	22	87	8	65	2	20	0	77	0.87
18355247--18355301	17	3.2	16	80	17	58	1	20	0	78	0.85
18358045--18358076	12	2.6	13	90	9	50	81	6	12	0	0.87
18359468--18359612	30	4.9	29	73	5	110	35	6	22	35	1.81
18359543--18359626	30	2.8	30	85	0	105	41	5	16	35	1.73
18359989--18360013	13	1.9	13	100	0	50	20	32	0	48	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18365976--18366158	91	2.0	92	98	1	359	21	8	16	53	1.70
18366569--18366627	27	2.2	27	90	0	91	22	11	10	55	1.65
18369503--18369535	17	1.9	17	88	11	50	42	21	9	27	1.83
18370091--18370145	21	2.6	21	85	0	74	25	16	23	34	1.95
18373345--18373389	20	2.3	20	88	3	65	42	2	8	46	1.47
18375979--18376005	2	13.5	2	100	0	54	51	0	0	48	1.00
18380201--18380314	34	3.4	34	74	7	115	35	21	21	22	1.96
18380057--18380292	108	2.2	108	83	4	298	35	22	19	22	1.96
18380748--18380783	2	18.0	2	94	0	63	50	47	0	2	1.15
18391686--18391736	26	2.0	26	84	7	68	39	0	19	41	1.52
18391685--18391755	28	2.6	28	78	14	69	42	0	16	40	1.49
18404860--18404885	2	13.0	2	100	0	52	50	0	0	50	1.00
18406229--18406315	24	3.6	23	69	20	61	34	1	0	64	1.01
18407531--18407581	16	3.1	16	77	8	57	19	1	5	72	1.15
18409856--18410054	78	2.7	73	88	3	272	31	11	11	45	1.76
18414275--18414308	16	2.1	16	89	10	52	17	17	5	58	1.57
18418347--18418425	26	3.0	26	85	3	88	58	6	5	30	1.45
18419944--18420007	25	2.5	26	82	5	85	32	28	12	26	1.93
18419945--18420035	25	3.6	25	83	1	83	34	27	14	24	1.94
18427788--18427900	40	2.8	40	88	5	149	42	19	16	21	1.89
18430350--18430415	20	3.2	20	81	14	73	37	24	15	22	1.92
18430370--18430425	27	2.1	27	80	12	62	33	25	19	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18430384--18430422	21	1.9	20	94	5	69	33	28	15	23	1.95
18440708--18440782	24	3.1	24	90	0	114	26	10	8	54	1.62
18442688--18442750	24	2.6	24	84	0	81	26	14	9	49	1.74
18443855--18443954	19	5.5	17	70	16	67	66	1	1	32	1.05
18443884--18443958	38	1.9	39	84	12	102	68	1	0	30	0.98
18443894--18443957	15	4.2	16	78	11	64	67	1	0	31	1.00
18443856--18443988	9	14.4	9	72	14	85	65	1	2	30	1.14
18444032--18444077	19	2.4	19	79	10	58	67	4	2	26	1.21
18444541--18444778	9	26.4	9	67	22	94	34	1	3	60	1.22
18444580--18444619	20	2.0	21	90	5	64	42	2	2	52	1.28
18444631--18444778	19	8.2	17	69	18	70	31	0	4	62	1.20
18445125--18445166	16	2.5	17	76	3	50	64	0	2	33	1.07
18449822--18449874	9	5.8	9	77	18	56	52	0	0	47	1.00
18449818--18449874	20	3.0	20	78	14	66	54	0	0	45	0.99
18449827--18449896	29	2.4	30	92	2	115	52	0	1	45	1.09
18449827--18449905	29	2.7	29	77	14	81	50	0	2	46	1.14
18450962--18451038	29	2.7	29	91	0	136	50	0	0	49	1.00
18450999--18451041	22	2.1	21	87	12	63	55	0	0	44	0.99
18451560--18451618	28	2.1	28	84	9	75	52	11	5	30	1.59
18459089--18459138	26	1.9	26	83	0	64	36	4	12	48	1.59
18462440--18462478	19	2.0	20	85	5	53	33	5	7	53	1.51
18464810--18464855	24	2.0	24	83	8	60	43	0	2	54	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18467760--18467821	30	2.1	29	82	5	72	30	1	24	43	1.64
18469604--18469947	124	2.8	122	85	4	451	22	22	16	38	1.93
18469853--18470111	48	5.9	46	70	19	167	22	21	17	38	1.93
18469859--18470109	85	3.0	85	88	1	360	22	21	17	37	1.94
18470029--18470603	124	4.7	124	83	0	715	22	19	17	40	1.91
18470388--18470482	48	2.0	48	85	4	129	24	22	13	40	1.90
18470029--18470601	247	2.3	247	85	1	747	22	19	17	40	1.91
18470523--18470773	85	3.0	85	85	1	333	23	21	15	38	1.92
18470805--18470898	48	2.0	48	84	0	125	21	24	17	37	1.94
18469603--18471072	664	2.2	665	86	2	2024	22	20	17	39	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132