genome.fa.s12.2.7.7.80.10.50.1000.23.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  23  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6635274--6635304	13	2.3	14	94	5	55	45	0	3	51	1.17
6635992--6636118	9	12.7	9	67	17	56	32	6	3	58	1.39
6636078--6636148	19	3.7	19	74	7	63	30	7	1	60	1.32
6636094--6636155	19	3.2	19	73	17	65	24	9	1	64	1.33
6636384--6636729	168	2.0	171	90	2	545	32	17	15	34	1.91
6636929--6636977	3	16.3	3	100	0	98	67	0	32	0	0.91
6638053--6638117	2	33.0	2	96	3	123	50	0	0	49	1.00
6643270--6643443	40	4.3	41	68	13	126	34	17	28	18	1.94
6643328--6643563	82	2.9	80	85	6	305	30	18	32	18	1.95
6643346--6643563	41	5.3	41	78	6	244	28	18	33	19	1.96
6643449--6643614	41	4.0	41	83	2	120	27	19	28	23	1.98
6643315--6643606	82	3.6	80	77	6	298	29	18	30	21	1.97
6645202--6645236	15	2.2	16	90	5	54	48	34	8	8	1.64
6647012--6647119	41	2.6	41	88	1	153	35	19	25	19	1.95
6648258--6648320	29	2.2	28	83	8	74	26	11	31	30	1.91
6648392--6648622	29	8.0	29	77	16	198	35	0	27	36	1.63
6648370--6648618	87	2.8	87	80	9	267	36	0	25	36	1.62
6648392--6648622	58	4.0	58	79	10	235	35	0	27	36	1.63
6649597--6649642	20	2.2	20	88	11	67	30	4	4	60	1.35
6650364--6650438	6	12.5	6	73	16	66	53	2	1	42	1.23
6650354--6650438	17	5.1	17	80	11	77	50	2	1	45	1.22
6650509--6650564	17	3.2	17	68	12	51	60	8	0	30	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6650509--6650565	18	3.2	18	70	5	62	61	8	0	29	1.26
6650500--6650579	35	2.2	37	86	10	130	55	6	0	38	1.25
6652149--6652193	22	2.0	22	91	4	72	8	15	11	64	1.49
6654494--6654748	43	6.0	43	85	1	334	25	16	27	29	1.97
6654494--6654748	85	3.0	86	85	2	336	25	16	27	29	1.97
6654501--6654761	128	2.0	128	85	1	344	26	16	27	29	1.97
6656130--6656239	42	2.6	41	85	4	148	28	19	34	18	1.95
6656179--6656239	21	3.0	20	71	7	59	29	18	36	16	1.92
6663232--6663288	23	2.5	23	91	0	87	29	26	21	22	1.99
6664111--6664144	17	2.0	17	88	0	50	23	5	5	64	1.38
6672365--6672964	200	3.0	199	91	1	965	35	21	23	19	1.96
6673341--6673405	17	3.9	17	80	8	71	41	0	6	52	1.26
6673350--6673402	27	2.0	27	84	0	70	37	0	5	56	1.23
6674829--6674886	30	1.9	30	82	6	73	37	1	37	22	1.65
6675380--6675458	30	2.7	29	70	21	74	36	29	1	32	1.66
6675300--6675458	60	2.7	59	89	1	237	32	29	2	35	1.71
6675353--6675445	29	3.1	29	68	20	75	35	29	2	33	1.70
6684078--6684877	200	4.0	200	91	1	1252	36	21	22	20	1.95
6684808--6685175	196	1.9	196	97	0	700	35	20	22	21	1.96
6685470--6685505	16	2.2	16	90	0	54	47	2	0	50	1.15
6687545--6687920	59	6.4	59	87	3	508	32	29	1	35	1.68
6687512--6687884	29	12.7	29	67	20	143	32	29	2	36	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6687633--6687916	30	9.6	28	67	17	123	33	28	2	36	1.71
6690519--6690594	25	3.0	25	83	7	100	23	18	23	34	1.96
6690479--6690614	50	2.7	50	80	0	137	25	18	20	35	1.95
6690533--6690621	25	3.6	25	77	6	90	24	16	24	33	1.96
6696104--6696147	22	2.1	21	87	8	63	38	9	13	38	1.77
6697666--6697733	29	2.4	29	87	2	93	38	17	8	35	1.81
6699754--6699862	20	5.1	21	72	18	66	67	11	5	14	1.38
6702361--6702509	74	2.0	74	93	2	255	48	10	3	37	1.55
6710574--6710628	16	3.6	16	79	11	53	70	9	7	12	1.32
6711283--6711319	9	4.4	9	80	19	53	45	18	0	35	1.50
6711287--6711317	15	2.0	16	93	6	55	45	22	0	32	1.53
6714613--6714650	14	2.8	13	88	7	58	39	0	0	60	0.97
6717534--6717700	60	2.7	61	80	4	185	27	15	9	47	1.77
6722050--6722087	19	2.1	19	85	5	51	34	13	0	52	1.40
6728601--6728645	21	2.1	21	87	4	63	40	0	6	53	1.27
6738430--6738456	13	2.1	13	100	0	54	37	0	7	55	1.28
6738849--6738882	15	2.2	16	89	5	52	67	0	0	32	0.91
6745623--6745662	3	13.0	3	84	5	53	60	0	2	37	1.11
6752000--6752066	28	2.4	28	82	2	82	58	5	20	14	1.58
6753883--6753952	31	2.3	31	82	5	88	32	12	14	40	1.84
6754086--6754141	23	2.4	23	100	0	112	50	0	7	42	1.30
6754734--6754928	98	2.0	98	86	6	272	38	14	16	29	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6755147--6755387	29	8.2	29	72	14	106	31	6	26	35	1.81
6755138--6755360	59	3.8	60	80	7	210	33	6	25	34	1.81
6755197--6755387	29	6.6	29	75	13	153	33	5	25	35	1.79
6755344--6755446	30	3.4	30	81	4	109	35	3	25	34	1.74
6757157--6757233	6	13.3	6	73	13	54	54	3	0	41	1.19
6757157--6757233	17	4.5	17	78	3	91	54	3	0	41	1.19
6759068--6759118	24	2.1	25	85	3	68	39	3	5	50	1.45
6760480--6760509	15	2.0	15	93	0	51	36	0	0	63	0.95
6760524--6760601	38	2.0	39	85	7	106	53	0	1	44	1.08
6775444--6775470	13	2.1	13	100	0	54	14	33	22	29	1.94
6779823--6779857	13	2.6	14	86	9	54	40	22	22	14	1.90
6782769--6782806	4	9.2	4	94	5	67	52	0	0	47	1.00
6782772--6782807	17	2.1	17	100	0	72	55	0	0	44	0.99
6791407--6791449	16	2.6	16	80	16	52	51	2	0	46	1.13
6799106--6799175	31	2.3	31	89	0	104	18	21	11	48	1.79
6800664--6800716	15	3.6	16	78	17	60	35	5	1	56	1.34
6803329--6803382	28	1.9	28	92	0	90	38	0	1	59	1.08
6803329--6803400	11	6.5	11	80	12	69	43	0	1	55	1.08
6803329--6803401	6	13.0	6	76	13	75	43	0	1	54	1.08
6803329--6803403	23	3.0	23	77	13	62	44	0	1	54	1.08
6803329--6803417	17	5.3	17	81	8	92	46	0	2	51	1.13
6805354--6805423	29	2.4	29	87	2	95	38	20	7	34	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6805411--6805780	59	6.3	59	83	3	453	32	28	2	35	1.72
6805469--6805627	29	5.5	29	75	16	150	35	27	0	37	1.57
6805440--6805663	29	7.7	27	71	22	134	34	29	1	34	1.68
6806719--6806798	29	2.8	28	74	14	81	38	21	5	35	1.75
6806810--6806964	30	5.2	30	70	18	117	32	26	3	36	1.75
6806780--6807089	59	5.3	59	87	2	408	32	26	3	37	1.73
6806821--6807089	29	9.1	30	68	21	115	31	27	3	37	1.73
6819394--6819506	31	3.4	31	68	15	100	36	15	21	27	1.93
6819532--6819814	38	7.5	37	66	20	133	34	13	20	32	1.91
6819191--6820070	76	12.0	74	86	7	1053	34	14	19	31	1.92
6819944--6820108	38	4.4	38	69	13	133	35	12	21	31	1.90
6820018--6820108	37	2.4	37	87	1	119	35	10	21	31	1.89
6820393--6820467	17	4.7	16	83	11	84	40	1	1	57	1.16
6820381--6820434	28	1.9	28	88	0	81	38	1	1	57	1.20
6820381--6820467	6	15.0	6	71	17	60	40	1	2	56	1.19
6820381--6820466	11	7.5	11	71	14	59	39	1	2	56	1.19
6822394--6822463	29	2.4	29	87	2	95	38	20	7	34	1.80
6822451--6822819	58	6.3	59	84	2	460	32	28	2	36	1.72
6822509--6822784	29	9.5	29	67	18	144	34	26	1	37	1.67
6822451--6822819	117	3.2	117	84	3	476	32	28	2	36	1.72
6833748--6834016	58	4.6	58	77	7	217	34	8	25	31	1.86
6833749--6834050	118	2.6	116	82	6	328	34	7	25	32	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6833746--6834090	29	11.8	29	71	13	140	34	6	25	33	1.83
6833863--6834107	118	2.1	118	83	7	302	34	6	23	34	1.82
6835960--6836002	16	2.6	17	92	7	79	60	9	0	30	1.28
6836347--6837236	209	4.3	209	89	0	1210	22	22	18	36	1.95
6837053--6837396	160	2.2	160	93	0	589	21	21	20	36	1.95
6836844--6837604	369	2.1	367	90	2	1193	22	22	18	36	1.95
6837220--6837609	209	1.9	208	88	0	591	23	22	18	35	1.96
6839443--6839532	47	1.9	47	97	0	171	28	22	20	28	1.98
6846457--6846695	29	8.4	28	71	8	108	30	7	28	33	1.84
6846559--6846727	87	1.9	87	81	8	200	33	5	26	34	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132