genome.fa.s12.2.7.7.80.10.50.1000.34.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  34  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9214789--9214934	40	3.5	42	80	10	165	23	26	10	39	1.87
9220613--9220732	26	4.7	26	80	12	140	35	15	24	25	1.94
9220613--9220757	52	2.8	52	81	11	174	33	14	24	26	1.94
9224069--9224442	38	9.8	38	83	1	435	31	16	17	34	1.92
9224069--9224445	114	3.3	114	86	0	502	31	16	17	34	1.92
9226211--9226244	17	2.0	17	88	11	52	41	20	8	29	1.82
9241846--9241880	17	2.1	16	89	5	52	45	0	0	54	0.99
9243867--9243928	32	1.9	33	86	3	90	43	8	11	37	1.70
9244645--9244702	6	9.2	6	81	10	71	0	50	1	48	1.11
9244645--9244702	13	4.6	12	81	10	71	0	50	1	48	1.11
9244628--9244702	38	1.9	39	91	2	125	0	52	1	46	1.09
9247152--9247187	14	2.6	14	91	8	56	27	22	8	41	1.82
9255084--9255190	28	3.8	28	97	0	196	30	17	29	21	1.96
9259823--9259895	3	25.3	3	72	8	53	67	0	28	4	1.09
9262080--9262135	22	2.8	21	76	17	57	58	1	5	33	1.31
9262337--9262376	16	2.5	17	88	8	57	32	0	7	60	1.25
9265217--9265283	27	2.5	26	76	11	66	29	8	2	58	1.44
9272821--9272919	23	4.3	22	77	8	90	67	14	6	12	1.39
9272824--9272888	12	5.5	12	74	7	53	72	9	4	13	1.26
9272883--9272931	11	4.4	11	78	2	53	63	20	8	8	1.48
9272916--9273018	22	4.8	23	77	12	103	66	23	6	3	1.33
9272968--9273010	11	3.8	11	81	6	59	67	20	9	2	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9272905--9273018	11	10.5	11	68	14	58	64	23	7	4	1.36
9273862--9273901	20	2.0	20	100	0	80	30	0	15	55	1.41
9274393--9274425	15	2.3	15	89	5	50	39	0	0	60	0.97
9275035--9275091	29	1.9	30	92	3	98	31	0	8	59	1.28
9276263--9276295	11	3.0	11	90	0	57	33	0	3	63	1.10
9276286--9276315	14	2.1	14	93	0	51	23	6	0	70	1.11
9278971--9279042	24	3.0	24	93	0	117	55	8	9	26	1.60
9280864--9280890	13	2.1	13	100	0	54	29	7	22	40	1.81
9280979--9281047	24	2.9	24	82	4	86	59	7	7	26	1.50
9280969--9281053	24	3.5	24	79	4	82	54	9	9	27	1.63
9283090--9283139	21	2.4	21	86	0	64	32	28	14	26	1.94
9283894--9284341	195	2.3	193	83	5	535	25	26	20	27	1.99
9291512--9291693	96	1.9	96	84	4	242	38	13	18	29	1.89
9291912--9291973	28	2.2	28	85	5	81	27	9	29	33	1.88
9292047--9292226	29	6.2	27	77	14	139	36	3	25	35	1.74
9291940--9292238	117	2.6	113	81	9	316	36	4	25	34	1.77
9291953--9292344	59	6.7	57	78	12	243	38	3	24	33	1.73
9292082--9292367	30	9.7	29	75	14	225	37	2	23	36	1.70
9292150--9292353	30	6.9	30	86	5	249	38	2	23	35	1.68
9292597--9292631	17	2.1	17	94	0	61	54	0	2	42	1.15
9292567--9292639	27	2.7	27	81	8	85	56	2	2	38	1.28
9295522--9295564	18	2.3	19	80	4	52	4	34	2	58	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9302716--9302781	3	21.3	3	73	6	51	37	3	1	57	1.23
9303546--9303580	17	2.1	17	94	0	61	54	0	2	42	1.15
9303516--9303588	27	2.7	27	81	8	85	56	2	2	38	1.28
9305290--9305327	17	2.2	17	100	0	76	31	21	21	26	1.98
9306546--9306580	13	2.7	13	95	0	61	34	28	5	31	1.81
9310259--9310289	11	2.8	11	100	0	62	64	0	0	35	0.94
9313120--9313348	126	1.8	127	84	2	318	32	17	23	26	1.97
9313850--9314413	45	13.9	45	74	15	282	42	14	7	35	1.74
9313955--9314519	36	14.7	36	75	14	416	43	15	6	34	1.73
9313979--9314510	126	4.6	110	78	13	419	43	15	6	34	1.74
9313850--9314551	162	4.5	157	79	11	659	42	15	6	34	1.74
9314055--9314510	109	4.0	110	77	13	429	43	15	6	34	1.73
9313892--9314519	271	2.3	271	86	4	879	42	15	6	34	1.74
9314175--9314551	197	1.9	198	87	2	560	42	16	6	33	1.75
9314372--9314515	71	2.0	72	90	1	227	44	18	5	31	1.72
9314476--9314564	45	2.0	44	82	8	108	42	17	6	32	1.76
9315459--9315572	39	2.9	39	73	0	111	22	17	16	42	1.88
9316757--9316958	55	3.6	54	76	9	183	50	10	16	22	1.76
9316750--9316959	29	7.5	27	75	7	145	50	10	16	21	1.75
9317350--9317431	12	6.8	12	75	10	78	7	4	19	68	1.32
9317350--9317424	24	3.2	23	84	5	87	8	5	18	68	1.35
9317336--9317431	24	4.0	23	75	11	86	8	6	19	65	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9317557--9317635	26	3.2	25	70	17	67	25	0	8	65	1.21
9319402--9319435	17	1.9	17	88	5	50	26	2	5	64	1.30
9326172--9326223	21	2.5	21	75	6	52	25	13	28	32	1.93
9334688--9334713	6	4.3	6	100	0	52	0	34	0	65	0.93
9337165--9337220	27	2.1	27	100	0	112	33	19	10	35	1.87
9337170--9337227	27	2.1	27	90	0	89	39	17	12	31	1.86
9342950--9343026	37	2.1	37	97	0	145	53	6	7	32	1.55
9344893--9344930	5	7.6	5	100	0	76	0	57	0	42	0.98
9354773--9354804	15	2.1	15	94	0	55	43	6	28	21	1.77
9388823--9388867	20	2.2	20	88	4	63	55	2	4	37	1.32
9395147--9395186	21	1.9	21	84	0	53	27	10	30	32	1.89
9395278--9395326	18	2.7	18	81	9	55	51	0	0	48	1.00
9396843--9396885	11	3.8	11	80	17	52	30	2	2	65	1.18
9396830--9396885	11	5.0	11	77	12	51	32	1	3	62	1.23
9410533--9410567	12	2.7	13	86	13	54	22	5	0	71	1.07
9410642--9410680	17	2.4	16	83	8	51	17	0	5	76	0.96
9411611--9411667	17	3.3	17	73	11	53	75	3	15	5	1.12
9412697--9412742	25	1.9	25	86	8	69	32	4	6	56	1.45
9421735--9421796	24	2.6	24	94	0	106	27	22	22	27	1.99
9424242--9424317	27	2.8	28	86	4	102	17	22	23	36	1.94
9424244--9424321	34	2.3	34	86	4	113	16	20	24	38	1.93
9424244--9424321	7	11.4	7	78	10	63	16	20	24	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9425304--9425358	22	2.5	22	88	8	76	21	0	18	60	1.37
9431346--9431409	27	2.4	27	81	0	74	15	25	21	37	1.93
9431347--9431431	13	6.4	13	75	10	66	16	24	18	40	1.91
9432665--9432717	20	2.6	21	82	5	65	20	26	16	35	1.94
9433087--9433126	14	2.8	14	92	3	62	17	7	30	45	1.76
9433220--9433249	15	2.1	15	93	6	53	56	23	0	20	1.42
9433273--9433381	8	13.4	8	67	21	50	48	23	0	27	1.51
9433273--9433380	15	6.7	15	68	19	58	48	24	0	27	1.52
9433283--9433381	23	4.3	23	66	16	62	47	24	0	28	1.52
9433204--9433383	67	2.7	69	88	3	267	47	23	0	27	1.56
9436880--9437116	52	4.5	52	86	1	305	32	25	13	27	1.94
9438967--9439025	27	2.2	27	84	3	75	23	35	23	16	1.95
9439495--9439521	9	3.0	9	100	0	54	22	0	0	77	0.76
9441447--9441490	10	4.6	9	83	11	52	65	2	2	29	1.16
9441368--9441491	19	6.2	20	69	10	83	65	5	2	26	1.27
9441655--9441689	17	2.1	17	88	0	52	20	2	2	74	1.08
9441727--9441797	9	7.8	9	81	12	65	36	0	0	63	0.95
9441720--9441798	10	8.2	10	80	17	80	35	1	0	63	1.03
9441725--9441788	16	4.1	17	75	24	77	37	0	0	62	0.95
9441560--9441801	10	24.7	10	66	12	76	28	3	3	64	1.27
9441778--9441822	21	2.1	21	84	8	56	24	4	2	68	1.19
9442537--9442578	20	2.0	20	86	9	57	40	4	21	33	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9448074--9448129	29	1.9	29	96	0	103	26	12	10	50	1.73
9449503--9449574	36	2.0	36	100	0	144	33	8	25	33	1.86
9451366--9451490	53	2.3	54	84	8	173	59	9	18	12	1.60
9451474--9451515	7	5.7	7	89	10	66	83	0	16	0	0.65
9451474--9451515	8	5.5	8	85	2	52	83	0	16	0	0.65
9451474--9451515	23	1.9	23	90	9	61	83	0	16	0	0.65
9453303--9454063	98	7.8	98	84	4	618	37	19	25	18	1.94
9453319--9454063	49	15.2	48	73	12	498	37	19	25	18	1.94
9453462--9453991	244	2.2	245	88	1	794	36	18	25	18	1.94
9453377--9454017	342	1.9	341	87	1	953	37	19	25	18	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132