genome.fa.s12.2.7.7.80.10.50.1000.87.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  87  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26445016--26445113	50	2.0	49	82	9	121	38	14	11	35	1.82
26445029--26445184	50	3.1	49	76	6	150	35	14	13	35	1.86
26455285--26455324	20	2.0	21	95	5	73	22	20	20	37	1.94
26456002--26456039	13	2.7	15	88	8	53	50	10	2	36	1.51
26460494--26460558	8	8.0	8	72	14	53	67	0	3	29	1.05
26460507--26460553	16	2.9	16	84	9	60	65	0	4	29	1.11
26460495--26460553	25	2.3	25	81	18	77	64	0	3	32	1.10
26460506--26460542	9	4.3	9	80	13	51	67	0	2	29	1.04
26461191--26461229	17	2.2	19	86	9	55	76	0	2	20	0.90
26478292--26478447	82	1.9	82	95	0	285	34	19	20	25	1.96
26484780--26484872	40	2.3	41	90	3	145	22	24	10	41	1.85
26484896--26485174	41	6.6	42	83	4	289	29	22	10	37	1.88
26484896--26485169	43	6.5	41	82	8	243	28	23	10	36	1.89
26485791--26485833	19	2.3	19	100	0	86	30	20	9	39	1.84
26509974--26510026	12	4.2	12	79	13	52	64	0	33	1	1.05
26509974--26510026	27	2.0	27	84	0	70	64	0	33	1	1.05
26509985--26510016	15	2.1	15	94	0	55	68	0	31	0	0.90
26531839--26531980	50	2.8	50	74	8	135	35	15	13	35	1.87
26533182--26533234	19	2.8	20	80	8	65	67	0	13	18	1.22
26533228--26533306	30	2.7	29	83	11	92	72	5	8	13	1.26
26533253--26533319	29	2.3	31	80	12	79	76	2	10	10	1.13
26535675--26535707	17	1.9	17	88	11	50	27	0	6	66	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26535919--26536056	50	2.7	51	73	11	129	36	13	13	35	1.85
26547370--26547411	15	2.5	17	81	14	52	38	7	23	30	1.82
26562864--26563009	74	2.0	75	95	1	267	34	13	15	36	1.86
26565245--26640130	215	350.6	214	76	7	57756	39	14	17	28	1.89
26566452--26566833	195	2.0	193	86	2	532	40	14	15	29	1.87
26640422--26641740	216	6.1	214	80	3	1371	39	14	16	29	1.88
26640433--26641740	431	3.0	430	84	2	1565	39	14	16	29	1.88
26642048--26642895	214	3.9	214	80	3	893	39	13	17	29	1.88
26642792--26642829	20	2.0	20	89	5	60	47	15	5	31	1.68
26643223--26643300	30	2.6	30	75	0	75	26	24	25	23	2.00
26647492--26647541	25	2.0	26	84	4	66	22	8	12	58	1.59
26655752--26655901	80	1.9	80	90	0	237	37	22	12	28	1.90
26657831--26657863	17	1.9	17	88	11	50	27	0	6	66	1.15
26662198--26662284	39	2.2	39	97	0	165	28	10	21	39	1.86
26665702--26665743	22	2.0	21	86	13	59	57	2	14	26	1.50
26667719--26667752	13	2.6	13	85	0	50	70	0	26	2	1.01
26672306--26675083	216	13.3	216	76	10	2314	39	15	16	28	1.89
26673078--26673119	21	2.0	21	81	9	50	50	14	9	26	1.73
26672789--26675000	201	10.6	203	73	13	1401	40	15	16	28	1.88
26672302--26676856	417	10.9	419	76	11	3644	40	14	16	28	1.88
26673711--26673755	19	2.3	19	80	3	54	53	11	8	26	1.65
26674176--26675009	217	3.9	212	78	10	814	39	14	17	28	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26675084--26676850	214	8.4	216	80	7	1813	40	14	16	28	1.88
26676108--26676862	201	3.7	201	75	13	537	40	14	16	28	1.87
26676837--26676936	49	2.0	49	96	0	182	28	20	20	32	1.97
26677999--26678129	50	2.6	50	83	3	154	36	12	16	35	1.85
26678330--26678364	17	2.1	17	89	10	54	71	2	0	25	1.00
26686562--26686609	6	8.0	6	77	9	53	2	16	4	77	1.03
26689371--26689522	80	1.9	79	89	4	234	31	13	19	34	1.91
26689962--26690105	48	3.0	46	85	12	177	51	14	9	24	1.72
26696011--26696158	80	1.9	80	83	0	197	29	15	20	35	1.93
26708139--26708171	16	2.1	16	94	0	57	51	15	18	15	1.77
26708139--26708184	17	2.8	16	90	3	65	45	15	19	19	1.85
26711576--26711654	37	2.1	37	92	0	131	25	21	29	24	1.99
26714619--26718196	893	4.0	894	97	0	6692	28	21	11	37	1.89
26743500--26743611	55	2.0	55	100	0	224	32	8	21	37	1.84
26746807--26746877	33	2.2	32	82	7	83	54	1	11	32	1.44
26746807--26746877	32	2.3	31	82	7	81	54	1	11	32	1.44
26748637--26749045	46	9.0	46	83	2	470	25	17	24	32	1.96
26750185--26750215	12	2.5	13	94	5	55	0	9	0	90	0.46
26751121--26751170	10	4.9	10	80	4	55	2	16	0	82	0.77
26751122--26751170	16	3.2	15	83	11	64	2	14	0	83	0.73
26755340--26755378	12	3.2	12	96	0	69	79	0	0	20	0.73
26757616--26759623	670	3.0	670	99	0	3930	40	9	14	35	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26759629--26759679	16	3.2	16	78	10	50	76	3	15	3	1.08
26764956--26764985	10	3.0	10	95	0	51	43	10	26	20	1.83
26766764--26766814	16	3.2	16	78	10	50	76	3	15	3	1.08
26767601--26767707	37	2.8	38	72	5	99	22	17	27	32	1.96
26768874--26768915	21	2.0	22	85	4	59	11	19	4	64	1.44
26791154--26791194	18	2.3	18	82	0	55	68	4	4	21	1.28
26808408--26808567	50	3.2	50	83	5	171	35	14	13	37	1.85
26808768--26808999	79	2.9	77	86	3	302	36	18	19	25	1.95
26811055--26811134	27	2.9	27	75	1	79	27	23	30	18	1.98
26811256--26811294	2	19.5	2	94	0	69	51	0	0	48	1.00
26817307--26817375	31	2.2	31	86	0	93	49	17	2	30	1.61
26818069--26818745	337	2.0	337	97	1	1279	37	21	9	31	1.85
26819044--26819095	27	2.0	26	84	3	68	23	19	13	44	1.86
26819431--26819460	7	4.3	7	100	0	60	0	43	0	56	0.99
26820310--26820353	17	2.6	16	82	10	52	54	0	45	0	0.99
26820309--26820353	12	3.8	12	80	16	58	55	0	44	0	0.99
26820309--26820351	11	3.7	11	80	20	52	55	0	44	0	0.99
26824795--26824845	2	25.5	2	100	0	102	50	0	0	49	1.00
26825227--26825268	16	2.6	16	77	7	50	71	0	9	19	1.13
26826068--26826110	19	2.3	19	84	8	52	58	4	0	37	1.19
26826710--26826900	103	1.8	104	85	3	269	25	24	12	37	1.91
26831306--26831359	19	2.8	19	75	10	56	55	9	0	35	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26832151--26832219	29	2.3	29	80	5	75	34	10	13	42	1.77
26832173--26832238	30	2.2	29	83	2	78	31	9	10	48	1.69
26833035--26833093	15	3.8	15	70	16	57	44	0	3	52	1.17
26834557--26834616	21	2.9	19	75	18	50	53	3	5	38	1.39
26840047--26840071	13	1.9	13	100	0	50	40	16	20	24	1.91
26841411--26841435	6	4.2	6	100	0	50	32	32	0	36	1.58
26843753--26843816	23	2.8	23	92	0	101	18	17	45	18	1.86
26847357--26847507	67	2.3	67	96	0	275	41	17	6	33	1.76
26852258--26852784	41	12.8	41	78	5	445	24	26	25	24	2.00
26852198--26852784	41	14.3	41	78	9	439	25	25	25	23	2.00
26854150--26854195	14	3.2	15	81	12	60	52	21	0	26	1.47
26857208--26857329	18	7.5	17	66	22	68	51	0	2	45	1.20
26857290--26857335	17	2.6	17	75	3	56	50	2	0	47	1.13
26857351--26857594	47	5.2	46	80	11	160	50	1	5	43	1.34
26857407--26857482	17	4.7	17	74	9	79	50	0	5	44	1.24
26857385--26857627	47	5.2	48	82	13	301	50	0	5	44	1.24
26857380--26858134	141	5.1	136	74	20	521	48	1	5	45	1.32
26857754--26858090	157	2.1	160	80	6	389	48	1	4	45	1.33
26857215--26858161	299	3.1	301	90	7	1514	47	1	4	45	1.32
26857843--26858163	111	3.1	105	76	14	315	46	1	4	47	1.34
26858092--26858161	8	8.1	8	70	14	50	42	0	2	54	1.15
26857586--26858161	18	33.9	18	64	20	115	46	1	4	47	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26857379--26858131	93	7.6	98	74	19	434	48	1	5	45	1.32
26863685--26863841	66	2.4	66	85	2	208	43	15	24	15	1.86
26863828--26863865	11	3.5	11	80	20	53	28	23	47	0	1.52
26863827--26863879	21	2.5	21	93	0	88	32	20	47	0	1.51
26864181--26864297	43	2.6	45	90	2	184	27	26	29	17	1.97
26869769--26870005	79	3.0	78	82	4	273	45	12	11	30	1.77
26870150--26870176	2	13.5	2	100	0	54	51	0	0	48	1.00
26871596--26871640	7	6.3	7	89	5	63	64	0	0	35	0.94
26872459--26872499	9	4.6	9	81	0	55	43	26	4	24	1.74
26872459--26872499	18	2.3	18	95	0	73	43	26	4	24	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132