genome.fa.s12.2.7.7.80.10.50.1000.64.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  64  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17988335--17988418	30	2.7	31	75	7	82	35	11	5	46	1.65
17990441--17990469	10	2.7	11	94	5	51	31	0	3	65	1.09
17990859--17990902	17	2.5	18	77	3	54	72	0	0	27	0.85
17994366--17994395	12	2.5	12	94	0	51	43	13	33	10	1.77
17999296--17999326	12	2.6	12	94	0	53	35	6	0	58	1.24
18009413--18009516	36	2.9	36	82	2	129	30	9	23	36	1.87
18009764--18009894	66	2.0	66	90	0	208	19	11	24	44	1.84
18009977--18010085	23	4.7	23	86	0	146	35	3	12	47	1.60
18009987--18010085	46	2.2	46	92	0	162	35	4	13	47	1.61
18010006--18010150	46	3.0	48	81	10	129	38	3	14	43	1.62
18010068--18010150	27	3.2	27	73	23	88	39	2	16	40	1.62
18010070--18010198	49	2.6	50	87	4	181	40	3	18	37	1.69
18010178--18010212	10	3.6	10	88	3	54	37	5	22	34	1.78
18010129--18010472	68	5.1	68	91	0	492	36	6	20	36	1.78
18010246--18010280	10	3.6	10	88	3	54	37	5	22	34	1.78
18010321--18010426	10	9.7	10	73	18	70	38	4	18	37	1.72
18012450--18012622	38	4.6	38	77	7	154	37	24	17	20	1.94
18012450--18012615	76	2.2	76	81	2	190	38	24	17	19	1.93
18012456--18012651	76	2.6	76	80	1	187	36	25	18	19	1.95
18012534--18012679	38	3.8	38	76	3	105	33	26	20	19	1.97
18012624--18012699	38	2.0	38	84	0	98	30	28	21	19	1.97
18015785--18015881	49	2.0	49	91	4	160	29	24	10	35	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18018394--18018468	38	2.0	38	84	2	98	36	20	12	32	1.89
18021174--18021209	7	5.1	7	96	0	63	75	0	25	0	0.81
18022808--18022905	38	2.6	38	88	3	137	29	31	13	25	1.93
18028450--18028504	25	2.2	25	96	0	101	38	21	7	32	1.81
18028810--18028848	17	2.3	18	86	8	55	61	7	5	25	1.44
18037077--18037427	175	2.0	175	97	0	657	31	16	25	27	1.96
18042454--18043061	189	3.2	189	81	4	742	32	16	26	24	1.96
18042557--18043156	95	6.3	95	71	11	460	32	16	26	24	1.96
18042741--18043353	294	2.1	283	84	4	771	31	16	26	24	1.96
18045364--18045539	52	3.4	52	87	3	223	25	15	22	36	1.93
18051861--18051985	52	2.5	52	83	7	143	28	12	22	36	1.91
18074552--18074614	18	3.5	18	74	20	60	30	3	1	65	1.18
18074563--18074613	26	2.0	26	84	7	68	31	1	1	64	1.15
18076972--18077322	120	2.9	120	87	0	495	29	25	15	29	1.96
18090105--18090163	27	2.2	26	78	6	64	64	0	5	30	1.15
18090114--18090183	27	2.6	27	79	0	68	58	4	2	34	1.32
18090877--18090918	12	3.6	12	77	6	50	40	21	14	23	1.90
18090872--18090941	23	3.0	23	85	2	95	42	18	11	27	1.84
18091031--18091075	12	3.8	12	85	5	65	53	17	15	13	1.73
18091927--18091965	21	1.9	20	84	5	51	64	10	20	5	1.44
18096801--18096848	19	2.5	19	87	9	71	75	0	14	10	1.06
18096804--18096848	20	2.3	20	88	11	67	73	0	15	11	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18102067--18102120	21	2.6	21	82	11	67	29	29	11	29	1.91
18102807--18102865	19	3.2	19	87	2	84	27	28	15	28	1.96
18104685--18104930	129	1.9	129	82	2	307	23	21	23	30	1.99
18104929--18104997	26	2.7	26	79	0	75	24	28	21	24	1.99
18111208--18111251	20	2.2	20	91	0	70	20	13	38	27	1.90
18127739--18128022	155	1.8	155	84	0	388	26	22	21	29	1.99
18128015--18128083	26	2.6	27	84	6	88	27	28	20	23	1.99
18130152--18130507	178	2.0	178	98	0	694	35	21	10	33	1.87
18135576--18135605	9	3.3	9	95	0	51	3	0	6	90	0.56
18146776--18146826	8	6.4	8	80	6	50	0	21	0	78	0.75
18146778--18146825	25	1.9	25	86	0	69	0	22	0	77	0.78
18147411--18147452	18	2.4	18	92	4	68	66	7	9	16	1.42
18147532--18147579	20	2.5	20	79	3	53	0	29	14	56	1.39
18158327--18158634	153	2.0	153	96	0	571	36	19	13	30	1.90
18161779--18161816	3	12.7	3	100	0	76	68	0	0	31	0.90
18164041--18164097	29	1.9	30	85	3	80	36	0	21	42	1.53
18176212--18176255	23	2.0	22	86	4	61	38	0	15	45	1.47
18188017--18188060	23	2.0	22	86	4	61	45	15	0	38	1.47
18190259--18190306	10	4.6	10	77	10	51	43	12	2	41	1.54
18191150--18191482	30	11.2	30	76	11	221	37	24	5	32	1.78
18191163--18191453	59	4.9	59	77	9	261	37	24	5	32	1.77
18191150--18191496	59	5.9	57	73	17	221	36	24	5	33	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18193725--18193762	18	2.2	17	86	9	51	28	0	0	71	0.87
18198687--18198745	24	2.5	24	97	0	109	23	22	23	30	1.99
18202148--18202345	99	2.0	99	92	3	328	24	13	17	43	1.85
18203185--18203243	24	2.5	24	94	0	100	20	20	25	33	1.97
18206980--18207149	67	2.5	67	89	4	263	55	7	9	27	1.59
18210840--18210879	3	13.0	3	94	5	71	67	0	0	32	0.91
18212520--18212746	59	3.8	59	84	4	278	36	5	28	30	1.79
18212565--18212717	29	5.2	30	67	26	103	35	4	28	32	1.77
18212493--18212746	117	2.2	119	86	2	343	36	5	28	29	1.79
18213414--18213444	16	1.9	16	93	0	53	25	51	12	9	1.70
18213477--18213522	12	4.0	12	76	18	53	0	19	2	78	0.86
18213481--18213528	23	2.0	25	88	8	73	2	16	4	77	1.03
18213780--18213820	3	13.3	3	84	5	55	36	0	0	63	0.95
18213779--18213825	22	2.2	22	92	3	78	36	0	0	63	0.94
18213786--18213823	16	2.3	16	95	4	67	36	0	0	63	0.95
18213781--18213881	19	5.4	19	69	18	61	37	4	1	55	1.33
18213839--18213880	16	2.4	18	84	11	52	35	4	2	57	1.33
18214543--18214603	13	5.2	13	79	16	53	49	0	0	50	1.00
18214563--18214665	6	18.0	6	70	20	69	54	0	1	42	1.18
18214563--18214665	17	6.4	16	77	13	86	54	0	1	42	1.18
18214563--18214653	17	5.7	16	81	13	107	54	0	2	42	1.12
18214565--18214632	10	7.1	10	69	15	54	54	0	2	42	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18214572--18214641	36	1.9	36	83	11	90	57	0	2	40	1.14
18215013--18215215	38	5.3	38	67	19	145	29	20	15	34	1.93
18214931--18215601	76	8.9	76	87	3	932	30	18	16	34	1.93
18227855--18228013	31	5.4	29	66	23	84	35	4	28	32	1.77
18227738--18228163	117	3.6	117	88	2	588	33	4	30	31	1.78
18228111--18228177	30	2.3	31	75	19	79	28	7	34	29	1.85
18227738--18228163	58	7.3	59	86	1	563	33	4	30	31	1.78
18227733--18228211	117	4.1	115	84	5	482	33	5	30	31	1.80
18228837--18228867	16	1.9	16	93	0	53	22	51	16	9	1.73
18229203--18229228	13	2.0	13	100	0	52	30	0	0	69	0.89
18229204--18229238	16	2.1	17	89	5	54	34	0	0	65	0.93
18229204--18229296	19	4.8	19	68	15	55	36	5	2	55	1.35
18229254--18229295	16	2.4	18	84	11	52	35	4	2	57	1.33
18229958--18230018	13	5.2	13	79	16	53	49	0	0	50	1.00
18229978--18230081	6	18.0	6	68	21	62	53	0	2	42	1.22
18229978--18230081	17	6.4	16	79	11	86	53	0	2	42	1.22
18229996--18230047	11	4.9	11	76	9	54	57	0	5	36	1.23
18229980--18230048	10	7.1	10	73	15	56	55	0	4	40	1.20
18229978--18230060	17	5.2	16	81	11	107	53	0	3	43	1.18
18230461--18230501	19	2.2	19	86	0	55	41	29	4	24	1.75
18232679--18232714	8	4.6	8	86	6	56	63	0	36	0	0.94
18232674--18232714	10	3.3	13	77	22	52	60	0	36	2	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18239720--18239763	22	2.1	22	87	8	65	4	15	0	79	0.89
18244633--18244729	47	2.1	47	96	0	176	38	14	10	37	1.80
18246919--18247266	192	1.8	191	85	3	493	52	11	11	23	1.70
18250817--18250852	18	2.0	18	89	10	56	69	0	5	25	1.10
18251142--18251187	20	2.3	20	92	0	74	32	39	4	23	1.75
18259851--18260070	103	2.1	103	88	2	334	32	15	24	28	1.95
18261625--18261712	40	2.2	41	80	10	101	42	20	18	19	1.90
18265130--18265165	6	6.0	6	86	0	54	33	27	0	38	1.57
18266734--18266778	4	11.5	4	78	21	51	71	0	28	0	0.87
18266749--18266776	7	4.0	7	100	0	56	71	0	28	0	0.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132