genome.fa.s12.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  111  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33730806--33730850	17	2.6	18	82	3	56	42	2	2	53	1.25
33736532--33736571	21	1.9	21	90	10	64	52	7	7	32	1.58
33737309--33737336	2	14.0	2	100	0	56	50	0	0	50	1.00
33737678--33737746	10	6.7	11	80	9	76	56	0	2	40	1.14
33737680--33737744	21	3.1	21	82	10	89	58	0	3	38	1.14
33737679--33737746	20	3.3	21	84	13	97	57	0	2	39	1.14
33738409--33738449	16	2.6	16	88	0	55	58	0	2	39	1.11
33741409--33741499	35	2.6	35	75	19	91	30	2	4	62	1.27
33742087--33742142	19	2.8	21	76	15	64	50	7	0	42	1.30
33742134--33742187	21	2.6	21	79	8	56	51	5	7	35	1.53
33742313--33742362	25	2.0	25	92	0	82	40	4	0	56	1.18
33743176--33743206	16	1.9	16	93	0	53	54	6	3	35	1.42
33746485--33746519	16	2.2	16	90	10	54	77	14	2	5	1.07
33754338--33754424	25	3.5	25	84	9	106	47	16	24	12	1.81
33756435--33756482	25	1.9	25	83	8	62	45	16	0	37	1.48
33772831--33772868	19	2.0	19	100	0	76	36	10	15	36	1.82
33774136--33774165	14	2.1	14	100	0	60	56	6	0	36	1.26
33775015--33775152	56	2.4	57	85	4	190	51	1	0	46	1.15
33775278--33775329	22	2.5	19	84	9	59	73	3	5	17	1.19
33776879--33776925	13	4.0	12	78	15	62	25	0	2	72	0.96
33776886--33776933	10	4.4	10	82	12	51	22	0	4	72	1.01
33782642--33782703	18	3.3	18	78	8	70	51	0	3	45	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33783811--33783841	2	15.5	2	100	0	62	48	0	0	51	1.00
33788247--33788328	18	4.8	17	74	18	64	69	0	0	30	0.89
33788256--33788329	17	4.3	18	73	14	66	71	0	0	28	0.86
33788292--33788330	9	4.3	9	84	12	53	76	0	0	23	0.78
33788615--33788656	20	2.2	19	91	4	66	52	0	4	42	1.22
33796481--33796521	18	2.3	18	87	4	57	9	7	4	78	1.10
33803393--33803593	101	2.0	101	94	1	350	31	12	22	33	1.91
33804791--33804837	19	2.6	18	80	10	51	23	2	12	61	1.42
33805290--33805333	23	2.0	22	86	4	61	38	2	4	54	1.33
33805285--33805334	22	2.3	21	80	10	55	40	2	4	54	1.31
33811163--33811245	43	1.9	43	90	0	130	22	16	20	39	1.92
33811100--33811229	65	2.0	65	86	3	181	22	18	18	40	1.91
33811163--33811220	21	2.8	20	79	10	62	24	13	18	43	1.87
33812966--33813091	52	2.4	52	94	0	225	25	23	27	23	2.00
33813166--33813206	21	2.0	22	85	9	59	29	0	4	65	1.13
33813370--33813408	16	2.5	16	87	4	53	64	0	0	35	0.94
33813748--33813778	11	2.8	11	95	0	53	6	3	45	45	1.45
33813908--33813949	11	3.9	11	84	6	59	21	0	0	78	0.75
33813902--33813953	22	2.3	23	83	16	72	25	0	0	75	0.81
33814081--33814110	15	1.9	16	93	6	53	66	6	0	26	1.16
33814073--33814119	16	2.7	18	75	25	55	59	4	0	36	1.17
33821436--33821460	13	1.9	13	100	0	50	8	8	0	84	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33824051--33824088	16	2.3	17	86	13	53	44	5	2	47	1.39
33827344--33827384	21	2.0	21	95	0	73	17	21	26	34	1.95
33827347--33827394	21	2.3	21	85	0	60	18	25	22	33	1.97
33832037--33832084	25	2.0	24	83	4	60	58	4	4	33	1.36
33837221--33837469	59	4.2	58	79	6	209	38	5	22	33	1.77
33837261--33837411	29	5.1	29	66	15	103	40	6	19	33	1.78
33837261--33837470	59	3.6	59	84	2	226	37	6	21	34	1.80
33837317--33837548	59	3.9	58	82	5	232	34	4	24	36	1.76
33837252--33837549	118	2.5	118	80	2	305	37	5	22	34	1.77
33837317--33837553	30	8.0	30	68	13	107	34	4	24	36	1.76
33837317--33837518	30	6.9	29	70	13	126	34	4	25	36	1.76
33837534--33837578	18	2.4	19	85	11	65	28	4	28	37	1.77
33837564--33837670	30	3.5	30	85	1	133	37	3	27	31	1.74
33838667--33838729	12	5.2	12	76	3	54	46	1	1	50	1.20
33839451--33839497	17	2.7	18	77	6	53	53	12	2	31	1.51
33842159--33842220	29	2.1	29	100	0	124	58	3	0	38	1.15
33844011--33844666	325	2.0	327	90	3	1043	44	5	19	30	1.73
33848843--33848881	15	2.7	15	88	7	55	46	0	0	53	1.00
33848852--33848885	16	2.1	16	88	5	50	44	0	0	55	0.99
33849898--33849939	6	7.0	6	100	0	84	33	0	66	0	0.92
33849981--33850068	40	2.2	39	88	8	124	48	1	0	50	1.08
33849981--33850062	20	4.0	20	75	15	87	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33851634--33851796	57	2.8	56	80	11	161	35	6	26	31	1.82
33851628--33851791	28	5.8	26	66	24	75	33	6	28	31	1.83
33851634--33851813	59	3.1	58	76	14	158	35	7	26	31	1.83
33851840--33851936	30	3.3	30	80	2	115	32	6	26	34	1.81
33857423--33857505	42	2.0	42	97	0	157	28	22	12	36	1.90
33863233--33863264	3	10.7	3	100	0	64	34	0	0	65	0.93
33864684--33864715	5	6.4	5	100	0	64	0	18	0	81	0.70
33865676--33865724	10	4.7	10	80	7	53	65	2	2	30	1.15
33867965--33868022	30	2.0	29	86	10	82	25	3	0	70	1.03
33872149--33872186	17	2.3	17	86	4	51	26	21	7	44	1.79
33871145--33872747	797	2.0	800	98	0	3104	27	22	14	35	1.92
33884779--33885166	80	4.8	79	84	3	447	22	18	26	32	1.97
33886230--33886308	15	5.0	15	71	10	59	34	1	2	62	1.17
33886221--33886319	48	2.1	48	100	0	198	30	2	2	65	1.15
33892933--33893015	20	4.0	20	73	16	71	49	1	7	42	1.38
33895943--33896029	23	3.7	23	78	14	79	12	25	21	40	1.89
33895938--33896014	25	3.1	26	75	22	76	14	24	19	41	1.89
33895994--33896068	39	1.9	39	91	0	123	12	22	21	44	1.85
33896043--33896122	22	3.5	22	75	11	61	13	25	15	46	1.82
33903948--33904039	31	2.9	31	88	6	123	41	5	4	48	1.46
33904028--33904103	30	2.6	30	81	10	77	46	1	1	51	1.17
33919307--33919388	38	2.1	39	90	4	130	40	1	6	52	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33920637--33920715	38	2.1	38	97	0	149	39	8	7	44	1.64
33921694--33921736	20	2.2	20	91	4	70	48	2	2	46	1.27
33929781--33929873	19	4.9	19	90	0	141	31	18	27	22	1.97
33929898--33929974	26	3.0	26	86	0	109	37	18	20	23	1.94
33929898--33929992	26	3.6	26	84	1	91	33	16	23	26	1.96
33932108--33932145	19	2.0	19	94	0	67	23	28	21	26	1.99
33932130--33932290	45	3.6	45	78	3	189	26	23	14	35	1.93
33932125--33932289	90	1.8	90	85	0	231	26	23	14	35	1.93
33934633--33934695	31	2.0	31	85	11	85	42	0	1	55	1.09
33936208--33936245	3	12.7	3	88	0	58	5	0	26	68	1.11
33941733--33943608	952	2.0	945	88	2	2818	27	20	18	33	1.96
33951989--33952248	30	8.8	29	77	11	210	36	3	26	33	1.72
33951989--33952174	59	3.2	58	77	10	191	36	3	27	32	1.75
33951989--33952222	89	2.6	86	81	10	249	35	3	28	32	1.74
33952076--33952204	59	2.2	60	85	1	170	38	3	24	33	1.73
33953861--33953908	23	2.1	23	84	0	60	20	6	18	54	1.65
33953904--33953986	34	2.5	32	88	7	121	55	4	1	38	1.29
33953903--33953986	17	5.0	17	79	5	100	55	4	1	38	1.28
33956563--33956657	6	17.0	6	71	22	73	44	1	1	53	1.14
33956579--33956657	16	5.2	16	75	17	87	44	1	1	53	1.16
33956558--33956588	12	2.6	12	89	0	53	38	0	0	61	0.96
33956579--33956639	10	5.7	10	80	16	61	40	1	1	55	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33956558--33956639	11	7.4	11	80	12	62	40	1	1	57	1.14
33956591--33956655	27	2.4	27	92	0	103	41	1	1	55	1.18
33956579--33956657	27	2.6	32	73	23	87	44	1	1	53	1.16
33956568--33956659	17	4.9	17	68	25	60	44	1	1	53	1.15
33956632--33956682	16	3.2	16	81	10	52	54	0	3	41	1.19
33957479--33957537	22	2.7	22	85	12	70	64	1	0	33	1.04
33958258--33958591	162	2.1	162	89	1	517	26	17	13	42	1.86
33958701--33959182	59	8.2	58	82	6	528	31	27	4	36	1.76
33958701--33959189	29	16.7	29	66	25	137	30	28	4	36	1.78
33958693--33959189	117	4.3	116	83	3	604	31	27	4	36	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132