genome.fa.s12.2.7.7.80.10.50.1000.127.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  127  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39245890--39245946	21	2.7	21	78	10	62	71	1	8	17	1.19
39245914--39245945	15	2.1	15	94	0	55	71	0	9	18	1.12
39245890--39245950	22	2.8	22	82	7	72	70	1	9	18	1.23
39246498--39246560	30	2.1	30	90	3	99	52	6	19	22	1.68
39246781--39246823	19	2.3	19	84	8	52	58	4	0	37	1.19
39247568--39247603	18	1.9	19	88	5	56	36	2	0	61	1.11
39252847--39252887	22	1.9	22	85	5	57	56	0	4	39	1.21
39254131--39254199	23	3.3	23	62	26	62	49	13	13	24	1.77
39254131--39254223	39	2.4	39	100	0	186	46	15	13	24	1.82
39255911--39255944	17	2.0	17	88	0	50	44	14	2	38	1.61
39255915--39255960	19	2.5	19	86	6	60	43	8	6	41	1.61
39259421--39259450	16	1.9	15	93	6	51	40	16	3	40	1.65
39271230--39271302	19	3.9	18	79	13	76	50	0	2	46	1.15
39271377--39271417	21	2.0	21	85	9	57	46	0	2	51	1.14
39272762--39272786	2	12.5	2	100	0	50	52	0	0	48	1.00
39273234--39273264	4	7.5	4	96	3	53	48	22	0	29	1.51
39273441--39273607	57	2.9	57	88	4	248	25	13	16	44	1.84
39273589--39273752	58	2.8	58	73	15	147	22	20	17	39	1.92
39275695--39275719	10	2.5	10	100	0	50	84	0	0	16	0.63
39278625--39278669	18	2.4	19	82	10	58	37	8	0	53	1.32
39286824--39286855	9	3.7	9	91	8	57	0	0	50	50	1.00
39288248--39288282	11	3.1	11	84	8	52	28	0	2	68	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39290774--39290824	21	2.3	23	83	10	61	33	7	0	58	1.27
39290771--39290834	30	2.2	30	82	2	76	39	6	0	54	1.26
39290787--39290829	23	1.9	22	85	4	59	32	6	0	60	1.23
39290787--39290829	22	1.9	22	86	13	61	32	6	0	60	1.23
39294085--39294117	14	2.4	14	94	0	57	30	9	6	54	1.56
39299047--39299085	16	2.4	16	100	0	78	15	46	5	33	1.68
39313496--39313556	16	3.8	16	81	12	79	55	14	1	27	1.49
39313489--39313572	33	2.6	31	80	9	98	54	22	1	21	1.51
39316594--39316651	15	3.7	15	80	13	55	50	0	6	43	1.29
39316583--39316631	16	2.8	17	81	15	55	55	0	2	42	1.11
39316931--39316969	20	2.0	20	89	0	60	58	0	2	38	1.12
39319027--39319085	31	1.9	31	82	3	75	66	3	11	18	1.38
39320599--39320640	21	2.0	21	86	9	59	38	0	2	59	1.10
39321032--39321084	26	2.0	26	85	3	70	37	9	5	47	1.60
39328182--39328227	24	1.9	23	86	8	65	54	4	4	36	1.40
39331947--39331976	15	1.9	16	93	6	53	56	0	0	43	0.99
39335860--39335927	26	2.7	26	84	6	86	38	22	14	25	1.92
39353218--39353281	31	2.1	30	85	2	83	35	17	7	39	1.78
39357374--39357407	3	11.3	3	100	0	68	35	32	0	32	1.58
39357640--39357698	6	9.8	6	73	14	50	38	3	1	55	1.26
39357656--39357683	14	2.0	14	100	0	56	35	7	0	57	1.26
39359585--39360009	58	7.3	58	86	3	534	34	29	2	33	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39359585--39360009	117	3.6	116	86	2	570	34	29	2	33	1.71
39359588--39360009	29	14.5	29	65	21	165	34	29	2	33	1.71
39359996--39360055	28	2.1	28	84	6	77	30	30	11	28	1.92
39364797--39364834	14	2.5	16	79	16	53	13	7	5	73	1.22
39371318--39371379	31	2.0	31	90	0	97	48	4	17	29	1.68
39377317--39377354	7	5.4	7	90	0	58	21	0	34	44	1.52
39386039--39386089	15	3.2	16	78	13	52	33	7	0	58	1.27
39390343--39390379	16	2.3	17	86	9	51	13	2	21	62	1.44
39392929--39393039	23	4.8	23	84	3	116	38	18	13	28	1.89
39393130--39393200	12	6.0	12	79	8	65	45	14	15	25	1.84
39393129--39393198	24	3.0	24	82	2	79	47	14	15	22	1.82
39393312--39393375	23	2.8	23	86	6	78	39	23	18	18	1.93
39393323--39393358	11	3.2	11	84	7	54	30	27	22	19	1.98
39395463--39395499	18	2.1	18	100	0	74	43	10	35	10	1.75
39399835--39399863	5	5.8	5	100	0	58	0	17	0	82	0.66
39407131--39407182	21	2.4	22	83	6	61	55	3	1	38	1.29
39413173--39413229	11	5.4	11	76	17	50	33	1	3	61	1.23
39414974--39415018	21	2.2	21	88	4	65	40	22	0	37	1.54
39424440--39424474	12	3.0	12	87	8	54	20	0	8	71	1.11
39425394--39425418	4	6.2	4	100	0	50	72	0	0	28	0.86
39426328--39426371	21	2.2	19	88	12	61	61	2	0	36	1.09
39430475--39430502	1	28.0	1	100	0	56	0	0	100	0	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39439224--39439279	29	2.0	28	85	3	76	35	7	19	37	1.79
39444392--39444425	15	2.1	17	89	10	54	64	0	0	35	0.94
39444792--39444830	3	13.0	3	100	0	78	33	0	0	66	0.92
39464309--39464394	30	2.8	30	76	15	79	51	9	2	37	1.47
39469310--39469887	210	2.8	208	88	2	820	32	17	17	33	1.93
39470285--39470547	144	1.8	144	80	1	321	28	24	19	27	1.99
39474514--39474554	20	2.0	21	86	13	59	51	0	0	48	1.00
39478085--39478723	210	3.0	208	79	7	684	31	18	16	33	1.94
39478998--39479262	144	1.8	144	83	4	347	27	22	20	29	1.98
39482825--39482912	23	3.8	23	83	4	97	29	12	18	39	1.87
39484129--39484185	30	1.9	30	92	0	96	45	3	1	49	1.29
39487645--39487702	13	4.5	13	78	6	55	55	1	1	41	1.20
39487645--39487698	27	2.0	26	82	3	63	57	1	1	38	1.20
39489266--39489379	37	3.1	37	100	0	228	41	5	7	45	1.56
39490601--39490635	17	1.9	19	88	11	56	37	31	2	28	1.72
39491036--39491068	2	16.5	2	100	0	66	48	0	0	51	1.00
39492721--39492746	2	13.0	2	100	0	52	50	0	0	50	1.00
39503026--39503097	32	2.3	31	83	9	83	55	8	11	25	1.62
39503030--39503100	31	2.3	30	81	11	81	54	8	9	26	1.61
39504634--39504671	19	2.0	19	94	0	67	34	13	10	42	1.78
39506542--39506599	30	2.0	29	86	3	80	27	1	3	67	1.17
39517831--39517863	2	16.5	2	100	0	66	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39517861--39517895	4	8.8	4	100	0	70	25	0	22	51	1.48
39538188--39538216	7	4.1	7	100	0	58	27	0	0	72	0.85
39543568--39543628	23	2.7	23	89	2	97	40	1	1	55	1.19
39543556--39543600	17	2.6	18	92	3	74	40	2	0	57	1.11
39543591--39543652	17	3.6	17	80	6	72	40	1	6	51	1.37
39543556--39543638	6	14.2	6	78	8	91	40	1	2	55	1.21
39543574--39543664	34	2.6	34	83	8	114	40	3	4	51	1.38
39544245--39544307	9	6.8	9	72	5	54	52	0	1	46	1.10
39545365--39545661	30	10.1	29	73	11	148	36	27	3	31	1.74
39545365--39545664	29	10.2	29	78	11	260	37	27	3	31	1.73
39545365--39545688	86	3.7	87	77	13	272	36	26	3	33	1.72
39545504--39545684	58	3.1	59	75	12	178	35	24	1	38	1.66
39547390--39547418	7	4.1	7	100	0	58	27	0	0	72	0.85
39553987--39554028	22	2.0	22	86	13	61	73	7	0	19	1.05
39560602--39560646	7	6.4	7	100	0	90	53	0	0	46	1.00
39563041--39563106	25	2.6	25	92	4	107	25	9	4	60	1.46
39568155--39568367	88	2.4	88	79	9	236	40	15	7	35	1.77
39568155--39568414	89	2.9	88	80	8	258	39	15	9	35	1.80
39568513--39568607	29	3.3	29	77	15	90	62	2	3	32	1.23
39568517--39568602	10	8.8	10	70	19	56	61	2	2	33	1.21
39568597--39568678	30	2.8	30	81	9	80	67	6	8	18	1.38
39568888--39568933	20	2.2	22	88	7	69	30	0	4	65	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39568890--39568952	19	3.3	19	77	6	56	31	0	3	65	1.09
39572945--39572983	5	7.6	5	91	8	53	82	0	0	17	0.68
39577589--39577651	26	2.4	26	76	10	67	38	1	3	57	1.24
39584777--39584831	28	2.0	28	82	13	69	40	0	0	60	0.97
39587963--39587997	5	7.2	5	87	6	54	57	0	0	42	0.99
39590386--39590419	15	2.3	15	89	0	50	50	14	2	32	1.58
39600867--39600896	16	1.9	15	93	6	51	30	0	6	63	1.20
39602406--39602438	2	16.5	2	93	0	57	48	0	51	0	1.00
39603003--39603057	4	13.8	4	80	0	56	40	1	9	49	1.45
39603003--39603057	6	9.2	6	85	0	56	40	1	9	49	1.45

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132