genome.fa.s12.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  103  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31501283--31501323	19	2.2	19	86	0	55	26	21	17	34	1.95
31503615--31503771	80	2.0	79	92	1	260	29	14	21	34	1.93
31504194--31504338	48	3.0	47	79	11	168	48	16	11	23	1.78
31504257--31504325	15	4.4	15	67	16	50	50	17	11	20	1.76
31523230--31523534	48	6.4	48	69	12	173	33	17	29	19	1.94
31523227--31523537	97	3.3	93	84	5	378	33	17	30	18	1.94
31523358--31523537	90	2.0	90	89	2	272	32	17	30	18	1.95
31524120--31524233	23	5.0	23	75	4	79	45	21	19	14	1.85
31524119--31524233	46	2.5	46	77	4	124	45	20	20	13	1.85
31525080--31525113	13	2.6	13	90	0	59	32	5	20	41	1.76
31527119--31527439	72	4.5	72	93	0	534	55	15	5	23	1.61
31527871--31527922	18	2.9	18	85	0	68	38	13	9	38	1.77
31532294--31532442	49	3.0	47	75	11	138	32	15	28	22	1.95
31535609--31535687	38	2.1	38	100	0	158	51	15	7	25	1.69
31539734--31539784	27	2.0	24	85	11	66	54	5	0	39	1.24
31547914--31547964	21	2.4	21	87	12	70	31	3	1	62	1.24
31550409--31550692	30	9.7	30	73	13	182	35	23	1	39	1.64
31550410--31550634	60	3.8	60	84	4	244	36	24	0	38	1.62
31550409--31550795	29	13.2	29	72	17	207	34	24	2	39	1.69
31550587--31550795	59	3.6	56	77	14	199	32	25	4	37	1.75
31550587--31550837	88	2.9	88	84	2	310	32	26	3	37	1.75
31556475--31556807	97	3.4	96	80	6	341	38	18	24	17	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31556476--31556794	49	6.5	49	71	12	217	38	18	25	16	1.92
31557459--31557508	13	3.9	13	80	10	59	22	42	20	16	1.89
31557461--31557511	27	1.9	26	88	11	77	23	43	17	15	1.88
31559072--31559110	20	1.9	20	84	5	51	30	20	2	46	1.64
31564157--31564408	59	4.3	59	88	2	337	34	3	28	34	1.75
31564157--31564376	117	1.9	118	89	0	343	35	2	29	33	1.72
31566306--31566363	17	3.5	17	86	11	68	53	6	0	39	1.28
31566332--31566385	24	2.2	24	90	0	81	53	1	0	44	1.11
31566315--31566385	6	12.0	6	70	19	51	53	4	0	42	1.20
31566333--31566385	18	2.9	18	85	0	61	52	1	0	45	1.11
31566355--31566395	18	2.3	18	87	8	57	53	2	2	41	1.27
31569215--31569405	99	1.9	99	100	0	382	35	8	7	48	1.62
31569628--31569666	2	19.5	2	100	0	78	48	0	0	51	1.00
31571907--31572026	58	2.1	58	85	3	161	33	0	17	48	1.53
31572442--31572467	11	2.4	11	100	0	52	30	0	0	69	0.89
31581086--31581112	12	2.2	12	100	0	54	59	7	7	25	1.51
31584097--31584144	2	24.0	2	100	0	96	50	0	0	50	1.00
31585049--31585259	30	7.1	29	80	6	190	36	24	1	37	1.67
31585024--31585249	90	2.5	90	84	5	253	37	23	2	36	1.68
31585024--31585350	60	5.5	59	76	8	254	36	24	2	35	1.70
31585092--31585310	30	7.4	29	81	6	201	35	24	2	36	1.70
31585408--31585489	29	2.8	29	75	7	76	30	21	7	40	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31597280--31597459	48	3.7	49	76	5	141	37	15	28	18	1.91
31597757--31598135	39	9.7	38	67	17	188	24	30	21	23	1.99
31597758--31598158	78	5.1	78	85	1	509	24	30	20	24	1.99
31598801--31598827	4	6.8	4	100	0	54	25	0	0	74	0.83
31598878--31598910	15	2.2	15	94	0	57	24	0	30	45	1.53
31599006--31599106	53	1.9	53	87	4	150	19	19	28	31	1.97
31600077--31600128	24	2.2	24	85	0	68	34	1	5	57	1.33
31600208--31600260	24	2.2	24	83	3	63	16	3	20	58	1.54
31606636--31606683	14	3.4	14	74	5	51	4	27	6	62	1.38
31624238--31624646	52	7.8	52	85	3	545	30	13	22	32	1.93
31624228--31624654	104	4.1	104	89	1	604	30	13	23	32	1.93
31637234--31637261	14	2.0	14	100	0	56	42	14	7	35	1.73
31639311--31639349	20	1.9	20	84	5	51	41	2	15	41	1.61
31639633--31639895	30	8.9	29	74	15	211	33	2	27	36	1.70
31639599--31639851	59	4.3	56	79	11	217	34	3	26	35	1.72
31639631--31639896	59	4.5	59	80	12	266	33	2	27	36	1.71
31640825--31640884	25	2.3	26	77	11	70	40	3	1	55	1.27
31641589--31641668	6	14.0	6	73	19	73	55	1	1	42	1.16
31641591--31641668	17	4.6	17	88	4	113	56	1	1	41	1.15
31641589--31641640	23	2.3	23	90	6	79	53	0	1	44	1.11
31641591--31641670	11	7.1	11	73	12	56	56	1	1	41	1.15
31649642--31649810	23	7.4	23	72	10	114	26	17	14	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31649647--31649800	46	3.3	46	86	3	213	27	17	13	41	1.87
31650043--31650098	25	2.2	25	96	0	103	48	19	5	26	1.70
31657592--31657687	49	2.0	48	89	2	147	33	16	15	34	1.91
31658024--31658063	21	1.9	21	100	0	80	42	5	15	37	1.68
31665353--31665411	30	2.0	30	90	6	93	42	20	11	25	1.86
31668519--31668544	3	8.7	3	100	0	52	34	30	0	34	1.58
31668543--31668578	3	12.0	3	100	0	72	33	0	0	66	0.92
31669145--31669426	132	2.1	132	85	5	372	42	3	8	45	1.52
31678668--31678825	85	1.9	85	86	0	226	22	22	16	37	1.93
31678414--31679674	209	6.0	210	88	2	1752	23	21	17	37	1.93
31678418--31679669	419	3.0	419	90	0	1880	23	21	17	37	1.94
31679805--31680041	99	2.4	97	84	5	300	18	29	16	35	1.93
31679808--31680061	97	2.6	99	82	7	304	18	29	16	35	1.93
31679820--31681223	49	28.7	49	71	6	545	18	28	15	37	1.92
31679989--31680256	148	1.8	148	81	1	340	18	29	14	36	1.91
31680070--31680941	245	3.6	245	76	6	621	19	27	14	38	1.91
31679875--31681217	147	9.1	148	73	4	683	18	28	15	37	1.92
31680163--31681168	245	4.1	246	77	5	812	18	28	15	37	1.92
31682175--31682218	6	7.0	6	80	10	52	0	20	0	79	0.73
31682176--31682218	13	3.3	13	90	0	68	0	18	0	81	0.69
31683082--31683120	19	2.1	18	90	4	60	0	15	0	84	0.62
31683093--31683119	14	1.9	14	100	0	54	0	11	0	88	0.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31687906--31688792	300	3.0	299	98	1	1735	30	13	12	42	1.82
31689355--31689379	12	2.1	12	100	0	50	48	0	0	52	1.00
31693248--31693381	61	2.2	61	97	2	252	38	7	23	31	1.82
31699409--31699444	19	1.9	19	88	5	56	22	47	0	30	1.52
31719994--31720018	2	12.5	2	100	0	50	48	0	52	0	1.00
31722901--31722935	18	1.9	18	88	0	52	62	8	0	28	1.24
31723108--31723134	13	2.1	13	100	0	54	44	0	0	55	0.99
31723910--31724007	31	3.3	30	73	13	94	24	12	14	48	1.77
31723910--31724036	59	2.1	60	89	1	193	23	13	13	49	1.77
31723937--31724129	88	2.2	88	88	3	291	24	17	11	46	1.81
31724025--31724170	59	2.4	60	85	2	186	22	19	10	47	1.80
31723940--31724132	28	6.6	28	73	14	133	24	17	11	47	1.80
31724348--31724479	31	4.3	31	70	7	117	46	13	15	24	1.81
31724337--31724448	60	1.9	60	83	1	145	48	13	15	23	1.80
31724399--31724514	31	3.9	31	78	14	104	52	9	12	25	1.69
31724462--31724514	27	2.0	25	86	13	72	58	7	9	24	1.55
31725455--31725639	60	3.2	57	80	11	180	25	14	11	48	1.78
31725847--31725982	31	4.5	30	72	14	100	44	12	18	24	1.84
31727029--31727109	40	2.0	40	90	4	128	40	20	8	29	1.83
31727683--31727707	5	5.0	5	100	0	50	80	0	0	20	0.72
31728537--31728601	25	2.5	27	80	10	89	46	4	1	47	1.32
31731782--31731831	21	2.4	21	86	0	73	34	22	16	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31735047--31735161	28	4.1	28	76	4	99	27	20	22	29	1.98
31737595--31737628	2	17.0	2	87	0	50	44	0	0	55	0.99
31737598--31737632	10	3.3	10	92	8	52	40	0	0	60	0.97
31737596--31737628	12	2.8	12	100	0	66	42	0	0	57	0.98
31737852--31737894	22	2.0	22	85	0	59	16	18	4	60	1.52
31738038--31738070	17	1.9	17	88	11	50	45	9	9	36	1.68
31741554--31741593	6	6.7	6	94	0	62	30	15	20	35	1.93
31743520--31743554	14	2.5	14	90	0	52	45	2	17	34	1.63
31746610--31746932	158	2.0	158	91	0	520	28	23	24	22	1.99
31750212--31750251	19	2.0	20	85	4	55	50	30	17	2	1.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132