genome.fa.s12.2.7.7.80.10.50.1000.42.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  42  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11370904--11371168	72	3.7	71	91	1	413	24	4	14	56	1.58
11372875--11372955	21	4.0	20	72	16	58	49	1	1	48	1.17
11372897--11372998	30	3.2	30	74	21	84	50	1	0	46	1.19
11373176--11373218	13	3.3	13	93	0	68	37	23	6	32	1.82
11375100--11375176	21	3.7	21	83	0	82	33	31	7	27	1.85
11375838--11375941	36	2.9	36	85	0	136	24	25	14	36	1.93
11380918--11380968	25	2.2	24	80	13	61	43	3	11	41	1.60
11382620--11382669	26	2.0	24	92	7	82	48	10	18	24	1.78
11382612--11382667	26	2.2	25	87	6	78	57	8	14	19	1.63
11384725--11384780	26	2.2	26	100	0	112	28	0	10	60	1.30
11386932--11386969	19	2.0	20	90	10	62	42	23	5	28	1.76
11402797--11402840	7	6.4	7	89	5	72	43	0	0	56	0.99
11402800--11402841	20	2.1	20	95	0	75	42	0	0	57	0.99
11406753--11406801	26	1.9	25	87	4	71	22	8	2	67	1.28
11407679--11407730	22	2.4	22	93	0	95	19	26	25	28	1.98
11414229--11414267	20	1.9	21	89	5	62	35	2	23	38	1.68
11419129--11419177	14	3.5	14	82	0	62	51	2	4	42	1.32
11419221--11419264	22	2.0	22	95	0	79	52	2	9	36	1.46
11419254--11419305	14	3.7	14	84	0	77	50	3	7	38	1.50
11419240--11419299	28	2.1	28	81	0	66	51	3	6	38	1.45
11419089--11419276	98	1.9	97	86	7	263	40	5	19	34	1.75
11428402--11428575	72	2.4	72	77	8	183	31	21	25	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11428647--11428744	39	2.5	39	86	1	153	37	23	15	23	1.93
11434504--11434617	55	2.1	55	91	0	183	26	16	22	34	1.95
11439273--11439315	22	1.9	23	85	4	61	27	4	2	65	1.25
11441065--11441105	21	2.0	21	100	0	82	36	29	19	14	1.92
11442506--11442545	10	4.0	10	90	9	64	87	0	12	0	0.54
11442507--11442545	12	3.4	12	89	6	55	89	0	10	0	0.48
11448024--11448055	10	3.2	10	95	0	55	56	9	0	34	1.32
11451880--11451941	27	2.3	26	80	2	61	59	3	0	37	1.13
11452991--11454351	676	2.0	678	99	0	2690	32	18	21	27	1.97
11455910--11455952	22	1.9	23	85	4	61	25	13	2	58	1.48
11456060--11456201	3	48.3	3	83	4	119	23	2	7	66	1.31
11456467--11456544	9	10.2	9	66	33	58	51	0	0	48	1.00
11456459--11456515	20	3.0	20	74	23	59	50	0	1	47	1.11
11456476--11456524	13	3.5	13	74	15	53	48	0	0	51	1.00
11456468--11456569	29	3.4	29	95	2	177	51	0	1	46	1.12
11458925--11459116	91	2.2	89	83	8	232	40	20	7	30	1.81
11459569--11459679	28	4.1	27	75	11	102	27	3	0	68	1.12
11459571--11459678	9	11.9	9	74	13	96	26	3	0	68	1.12
11459522--11459657	56	2.4	55	82	8	166	27	5	2	64	1.26
11459571--11459744	65	2.7	62	79	9	156	32	3	1	63	1.19
11459741--11459964	89	2.5	88	84	7	292	31	6	20	40	1.79
11481809--11481862	21	2.6	21	81	0	63	31	11	22	35	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11486979--11487019	13	3.1	14	89	6	59	31	7	14	46	1.72
11486980--11487071	13	7.1	13	75	4	51	30	5	22	41	1.76
11486982--11487071	26	3.5	26	75	0	81	31	5	22	41	1.77
11488006--11488349	43	8.0	43	81	0	373	26	26	18	29	1.98
11495556--11495627	29	2.5	28	84	6	90	34	12	23	29	1.92
11495562--11495779	58	3.7	59	81	7	196	35	6	23	34	1.80
11495581--11495923	29	11.7	28	72	11	133	34	4	25	35	1.75
11495585--11495943	59	6.1	61	78	10	270	36	3	24	35	1.74
11495639--11495950	30	10.6	29	74	12	217	36	2	24	36	1.71
11500948--11501221	29	9.3	30	72	15	116	34	6	25	33	1.82
11500907--11501177	59	4.7	58	79	11	233	35	6	26	31	1.82
11500908--11501189	29	9.7	29	74	14	217	35	6	25	32	1.82
11503142--11503225	11	7.5	11	70	10	53	58	2	0	39	1.11
11503132--11503250	17	7.1	17	82	0	141	58	3	0	37	1.15
11503132--11503246	34	3.4	34	91	1	178	58	3	0	38	1.15
11503434--11503532	8	12.4	8	69	16	53	49	0	3	47	1.17
11503417--11503467	18	2.7	18	90	6	75	56	0	1	41	1.10
11503452--11503562	48	2.3	48	95	0	195	48	0	3	47	1.19
11503472--11503554	26	3.4	25	75	13	91	45	0	4	49	1.23
11503543--11503572	8	3.8	8	90	0	51	66	0	0	33	0.92
11506008--11506033	2	13.0	2	100	0	52	50	0	0	50	1.00
11507002--11507454	29	15.7	29	72	12	238	35	23	3	36	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11507033--11507309	87	3.2	86	83	8	298	35	22	4	38	1.74
11507589--11507628	14	2.7	14	88	7	53	22	10	5	62	1.46
11512285--11512340	9	6.0	9	80	15	69	83	0	10	5	0.78
11512288--11512357	21	3.6	20	76	20	60	82	0	12	4	0.80
11512311--11512357	6	7.7	6	81	9	51	82	0	17	0	0.66
11512289--11512366	26	2.9	25	81	11	75	82	0	11	6	0.85
11512289--11512357	18	3.8	17	76	21	61	82	0	13	4	0.81
11512285--11512367	20	4.2	18	76	22	69	80	0	13	6	0.88
11512304--11512368	26	2.5	26	85	7	78	80	0	16	3	0.85
11513288--11513995	50	14.6	50	75	5	450	34	16	30	18	1.94
11513286--11513984	195	3.6	196	84	4	787	34	16	30	18	1.94
11513530--11513838	145	2.1	145	80	4	343	32	17	32	18	1.94
11514120--11514209	41	2.2	41	87	0	126	32	18	16	32	1.94
11514204--11515074	39	22.3	39	71	8	396	25	30	19	25	1.98
11514200--11514772	78	7.3	77	80	4	551	24	28	19	26	1.99
11514204--11514772	156	3.6	156	83	3	624	24	28	19	26	1.99
11514707--11515116	78	5.3	77	80	5	346	25	30	19	25	1.98
11514204--11515003	156	5.1	155	78	4	522	25	29	19	25	1.98
11514751--11515111	156	2.3	155	85	2	456	24	31	19	24	1.98
11517037--11517241	30	6.9	30	81	5	211	34	20	2	41	1.68
11517036--11517246	89	2.4	89	82	6	250	35	20	2	40	1.68
11517201--11517382	57	3.2	58	78	5	208	36	26	2	34	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11517032--11517440	29	14.1	29	75	9	201	35	24	2	37	1.70
11517563--11517613	14	3.6	14	86	7	59	23	7	3	64	1.37
11517574--11517615	16	2.8	16	89	7	61	28	9	4	57	1.51
11518810--11518937	41	3.1	41	80	6	132	22	25	11	39	1.88
11518867--11518957	41	2.3	40	84	3	112	17	25	12	45	1.83
11520718--11520815	40	2.5	40	91	3	153	16	23	13	46	1.82
11522090--11522353	72	3.7	72	88	1	397	54	15	5	24	1.62
11524580--11524628	25	2.0	25	83	0	62	34	0	16	48	1.46
11535291--11535348	24	2.4	24	86	13	84	58	5	0	36	1.20
11536237--11536278	21	2.0	21	95	0	75	33	11	19	35	1.88
11541210--11541985	386	2.0	386	97	0	1480	30	11	20	37	1.89
11548414--11548682	88	3.0	88	85	1	367	48	8	14	28	1.73
11551355--11551402	24	2.0	24	95	0	87	43	8	20	27	1.80
11564758--11564889	50	2.7	48	74	15	126	37	15	31	16	1.90
11564722--11565383	99	6.7	98	74	8	396	35	15	30	18	1.92
11564717--11565392	49	13.7	50	66	12	211	35	15	30	18	1.92
11564722--11565383	198	3.4	198	80	7	688	35	15	30	18	1.92
11564758--11565390	297	2.1	296	78	8	653	36	15	30	18	1.92
11574720--11574744	12	2.1	12	100	0	50	32	0	8	60	1.26
11590972--11591008	18	2.2	17	90	9	58	37	0	10	51	1.37
11595913--11596280	185	2.0	185	99	0	727	33	14	21	30	1.93
11596407--11596593	51	3.6	52	82	5	218	31	13	24	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11608992--11609075	41	2.0	41	100	0	168	32	19	16	32	1.94
11612511--11612691	96	1.9	98	82	4	233	27	24	13	34	1.93
11613201--11613234	14	2.2	16	90	10	54	70	2	17	8	1.25
11616238--11616279	22	1.9	22	90	0	66	76	2	4	16	1.07
11616238--11616294	22	2.6	22	83	5	62	73	1	8	15	1.16
11619232--11619262	16	1.9	16	93	0	53	12	9	6	70	1.31
11620546--11620743	68	3.0	68	71	18	191	41	3	5	50	1.41
11625436--11625655	36	6.1	36	79	10	173	31	10	20	37	1.86
11625449--11625655	72	2.9	71	89	1	297	31	10	20	37	1.86
11625449--11625655	108	1.9	108	86	3	292	31	10	20	37	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132