genome.fa.s12.2.7.7.80.10.50.1000.49.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  49  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13338008--13338051	18	2.2	21	88	11	67	11	2	27	59	1.44
13383572--13383622	24	2.1	24	92	0	84	21	13	9	54	1.67
13383580--13383633	24	2.2	24	86	0	72	25	16	11	46	1.80
13390912--13390967	6	9.7	6	78	7	53	57	5	0	37	1.22
13390898--13390963	17	3.8	16	80	11	69	56	4	1	37	1.29
13390912--13390967	17	3.2	17	84	2	76	57	5	0	37	1.22
13393802--13393871	6	12.2	6	69	19	51	42	1	1	54	1.18
13393820--13393851	11	2.8	12	95	4	57	40	0	0	59	0.97
13393802--13393845	17	2.6	18	85	10	65	38	0	2	59	1.10
13393802--13393871	17	4.4	17	76	22	62	42	1	1	54	1.18
13393800--13393868	29	2.4	28	88	7	95	42	1	1	55	1.18
13394042--13394100	3	19.7	3	83	0	64	57	3	3	35	1.32
13395213--13395284	30	2.4	30	85	0	90	41	20	2	34	1.67
13395304--13395665	59	6.2	58	75	9	312	33	27	4	35	1.77
13395304--13395665	118	3.1	118	78	5	382	33	27	4	35	1.77
13395239--13395665	30	14.6	29	68	17	181	33	27	4	34	1.77
13399078--13399127	23	2.2	23	85	0	64	24	20	12	44	1.85
13408069--13408097	10	3.0	10	95	5	51	62	6	0	31	1.22
13409253--13409670	30	14.5	30	69	18	126	37	26	2	33	1.71
13409349--13409767	58	7.2	58	82	6	390	35	26	2	35	1.70
13409253--13409767	29	17.8	28	72	15	270	36	26	2	34	1.72
13419379--13419976	300	2.0	299	94	1	1036	37	14	14	33	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13436864--13436888	11	2.3	11	100	0	50	24	44	12	20	1.85
13444982--13445083	29	3.6	29	72	19	90	38	2	26	32	1.71
13445097--13445159	30	2.1	30	93	0	108	34	4	26	33	1.78
13447094--13447139	17	2.5	20	76	20	55	58	2	0	39	1.10
13447505--13447955	209	2.2	209	85	1	591	23	23	17	35	1.95
13456095--13456190	23	4.2	23	87	2	104	42	11	20	25	1.85
13475537--13475637	30	3.4	28	76	15	96	40	0	26	32	1.56
13475476--13475642	59	2.8	60	80	8	182	37	1	28	32	1.68
13475533--13475638	29	3.6	30	80	12	123	38	0	28	33	1.57
13476163--13476210	22	2.2	22	92	0	78	31	22	16	29	1.96
13476169--13476216	22	2.2	22	100	0	96	22	29	18	29	1.98
13476604--13477014	30	14.1	28	71	14	180	35	27	2	34	1.71
13476604--13477070	59	8.0	59	75	12	342	34	27	3	34	1.73
13476823--13476960	28	4.8	27	73	17	75	35	30	0	33	1.63
13485560--13485938	29	12.8	29	72	16	149	35	2	26	35	1.70
13485561--13485938	59	6.4	57	80	9	350	35	2	26	35	1.70
13485572--13486024	117	3.9	116	81	7	458	33	2	27	36	1.70
13485615--13486024	30	14.0	30	72	13	243	34	1	27	35	1.68
13485770--13485985	59	3.8	55	79	11	143	34	2	26	36	1.70
13487948--13487992	18	2.5	18	85	0	63	57	2	0	40	1.11
13488353--13488803	209	2.2	209	86	1	600	23	23	17	36	1.95
13496925--13496986	23	2.7	23	87	0	88	45	12	17	24	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13508925--13508980	23	2.4	23	90	0	85	25	17	12	44	1.84
13517086--13517535	208	2.2	208	85	2	589	36	16	23	23	1.95
13519862--13520225	30	12.5	30	71	14	140	36	28	1	33	1.68
13519880--13520285	29	13.9	29	73	13	239	35	27	2	34	1.70
13519861--13520297	116	3.7	117	80	7	446	36	27	2	34	1.70
13519958--13520323	59	6.2	57	84	5	385	35	26	2	35	1.69
13520042--13520315	29	9.3	29	72	13	143	36	28	1	33	1.68
13528808--13529239	29	14.8	30	70	15	187	34	3	27	34	1.73
13528808--13529185	118	3.2	117	83	4	465	34	3	28	33	1.74
13528808--13529274	59	8.0	59	75	11	354	34	3	27	34	1.73
13529190--13529274	30	2.9	30	87	1	109	32	2	27	37	1.70
13529664--13529711	22	2.2	22	100	0	96	29	18	29	22	1.98
13530842--13530890	18	2.8	17	87	12	73	44	0	2	53	1.12
13530864--13530927	18	3.6	18	80	0	74	51	1	0	46	1.10
13531296--13531953	209	3.2	208	86	2	858	22	22	18	36	1.95
13539363--13539418	6	9.7	6	76	7	53	37	0	5	57	1.22
13539363--13539418	17	3.2	17	85	10	69	37	0	5	57	1.22
13554065--13554127	24	2.6	24	82	0	81	47	12	15	23	1.80
13572105--13572149	18	2.3	18	85	14	54	60	26	2	11	1.42
13576657--13576681	11	2.3	11	100	0	50	20	0	0	80	0.72
13582708--13583808	591	1.9	591	94	0	1916	32	16	17	33	1.93
13586141--13586571	29	14.8	27	70	18	203	34	3	27	35	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13586141--13586562	232	1.8	232	86	4	618	34	3	27	34	1.73
13586141--13586663	59	9.0	60	75	10	380	33	3	28	35	1.73
13586141--13586663	117	4.5	115	77	9	404	33	3	28	35	1.73
13586579--13586659	30	2.7	30	88	0	108	30	2	27	39	1.70
13587784--13587839	3	18.7	3	80	7	51	35	1	3	58	1.26
13587814--13587842	10	3.0	10	95	5	51	31	0	6	62	1.22
13588578--13588625	18	2.8	16	87	9	60	47	0	2	50	1.12
13588595--13588660	6	11.0	6	74	6	62	54	1	0	43	1.09
13588595--13588648	24	2.2	24	87	6	74	51	1	0	46	1.11
13588577--13588660	42	2.0	41	88	2	123	52	1	1	45	1.16
13589022--13589677	208	3.1	208	85	2	843	21	22	18	36	1.95
13597975--13598629	209	3.1	209	86	1	877	36	18	21	22	1.95
13599001--13599064	18	3.6	17	80	4	65	43	0	3	53	1.16
13599001--13599084	42	2.0	41	84	6	107	46	1	2	50	1.22
13599031--13599084	18	3.1	18	86	10	76	51	1	0	46	1.11
13599034--13599066	6	5.5	6	86	13	50	54	0	0	45	0.99
13600994--13601577	30	19.9	30	66	22	151	34	28	3	34	1.73
13600994--13601577	59	10.0	58	78	10	480	34	28	3	34	1.73
13601094--13601577	176	2.7	173	81	8	582	34	28	2	34	1.72
13600994--13601577	117	5.0	117	81	7	611	34	28	3	34	1.73
13621607--13621702	23	4.2	23	86	4	104	25	20	11	42	1.85
13630618--13630663	18	2.6	18	82	0	65	41	0	2	56	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13630617--13630673	30	1.9	29	89	3	87	43	0	1	54	1.10
13630618--13630672	18	3.1	18	76	10	58	43	0	1	54	1.10
13632571--13633002	30	14.8	29	66	16	144	36	27	2	33	1.70
13632589--13632995	29	13.9	29	74	13	243	35	28	2	33	1.71
13632667--13633033	59	6.2	57	85	4	421	35	27	1	35	1.68
13632658--13633022	117	3.1	117	86	4	493	35	28	1	33	1.68
13632897--13633039	29	4.9	29	66	25	70	33	25	2	37	1.71
13637889--13637961	23	3.2	23	92	0	110	24	20	10	43	1.84
13637901--13637985	23	3.7	23	87	3	100	23	17	11	47	1.81
13639211--13639281	29	2.4	29	79	4	72	38	15	5	40	1.71
13639443--13639506	29	2.2	29	86	5	85	35	29	9	25	1.87
13641072--13641219	49	3.0	48	75	4	143	38	18	27	15	1.91
13641606--13642394	204	3.9	206	90	2	1166	34	19	23	23	1.97
13641610--13642401	409	1.9	407	88	2	1187	34	18	23	22	1.96
13642329--13642450	49	2.5	49	97	0	226	35	15	24	24	1.94
13642125--13642657	256	2.1	255	90	1	827	34	19	23	22	1.96
13644226--13644404	29	6.2	29	76	8	159	34	25	5	35	1.78
13644268--13644406	58	2.4	56	86	5	188	36	25	2	34	1.71
13644227--13644404	87	2.0	88	84	3	234	34	25	5	35	1.78
13644302--13644550	58	4.3	58	75	11	170	31	25	6	36	1.80
13672481--13672542	23	2.7	23	87	0	88	45	12	17	24	1.84
13687358--13687430	23	3.2	23	92	0	110	24	20	10	43	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13687370--13687454	23	3.7	23	87	3	100	23	17	11	47	1.81
13688681--13688751	29	2.4	29	79	4	72	38	15	5	40	1.71
13688766--13688931	59	2.8	58	76	9	158	31	24	7	35	1.84
13688913--13688976	29	2.2	29	86	5	85	35	29	9	25	1.87
13690560--13690688	49	2.6	48	79	7	145	41	17	26	14	1.88
13691079--13692077	204	4.9	206	89	1	1402	34	18	23	23	1.96
13691079--13692016	409	2.3	407	88	2	1355	34	19	23	23	1.96
13693639--13693758	29	4.2	28	73	14	102	35	22	6	35	1.81
13701622--13701799	29	6.1	29	72	10	103	35	5	24	34	1.77
13701622--13701750	61	2.2	58	80	10	145	34	3	25	36	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132