genome.fa.s12.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  52  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14356991--14357411	59	7.2	57	77	8	361	35	2	26	35	1.71
14356991--14357420	29	14.8	29	69	18	202	35	2	26	35	1.71
14359813--14360246	209	2.1	209	86	2	604	22	22	17	37	1.94
14368461--14368505	23	2.0	23	82	8	56	44	11	22	22	1.84
14369994--14370018	13	1.9	13	100	0	50	16	48	8	28	1.74
14372381--14372908	59	9.3	58	71	17	301	34	3	26	34	1.74
14372385--14372773	29	13.4	27	68	20	148	34	3	27	34	1.73
14372381--14372740	118	3.1	117	81	6	378	35	2	27	35	1.71
14372731--14372821	47	1.9	48	84	2	121	31	4	27	36	1.77
14372800--14372949	30	5.0	30	75	11	121	35	6	23	35	1.79
14373988--14374046	3	19.7	3	83	0	64	35	3	3	57	1.32
14374216--14374285	6	12.2	6	69	19	51	54	1	1	42	1.18
14374219--14374287	29	2.4	28	88	7	95	55	1	1	42	1.18
14374216--14374285	17	4.4	17	72	22	71	54	1	1	42	1.18
14374236--14374267	11	2.8	12	95	4	57	59	0	0	40	0.97
14375788--14375843	6	9.7	6	73	7	53	39	0	5	55	1.23
14375788--14375843	17	3.2	17	79	2	67	39	0	5	55	1.23
14377723--14377893	29	5.9	29	67	7	96	38	26	4	30	1.77
14377723--14377852	59	2.2	58	78	4	154	41	26	3	28	1.71
14377723--14377867	59	2.5	57	76	11	150	38	28	4	28	1.75
14377723--14377885	59	2.8	58	74	10	145	39	27	4	28	1.75
14377996--14378057	29	2.1	29	81	0	70	35	24	9	30	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14406349--14406404	6	9.7	6	76	7	53	37	0	5	57	1.22
14406349--14406404	17	3.2	17	85	10	69	37	0	5	57	1.22
14406353--14406418	17	3.8	17	81	15	66	37	1	4	56	1.29
14408271--14408459	29	6.4	30	74	9	147	38	24	3	33	1.73
14408290--14408459	59	2.9	58	80	6	164	38	25	2	32	1.71
14413073--14413573	29	17.2	28	71	17	222	34	2	27	34	1.72
14413103--14413496	58	6.7	59	79	7	383	35	2	27	34	1.72
14413073--14413497	59	7.3	59	79	5	357	35	3	27	33	1.73
14413520--14413585	29	2.2	30	86	2	89	28	3	28	39	1.72
14415505--14415538	17	2.1	16	94	5	59	41	0	2	55	1.15
14415979--14416610	209	3.0	208	85	2	822	21	21	18	37	1.94
14418426--14418471	24	1.9	23	86	8	65	56	6	4	32	1.45
14420384--14420426	11	3.7	11	81	9	50	74	4	2	18	1.10
14423273--14423337	13	4.9	13	76	10	51	73	1	3	21	1.05
14424393--14424438	24	1.9	23	86	8	65	56	6	4	32	1.45
14429050--14429092	6	7.2	6	83	0	50	44	2	4	48	1.36
14430935--14431077	57	2.5	57	82	11	157	38	20	5	35	1.76
14430935--14431109	29	6.0	28	75	15	115	37	22	5	35	1.76
14431144--14431276	59	2.2	60	81	7	148	33	23	6	36	1.81
14431144--14431221	29	2.7	28	72	21	70	32	25	7	34	1.84
14437633--14437666	11	3.0	11	87	8	50	38	0	2	58	1.13
14437634--14437686	6	9.0	6	76	12	56	41	1	1	54	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14439523--14439630	29	3.7	30	73	9	89	37	23	5	34	1.78
14446176--14446565	58	6.7	57	75	9	234	33	4	28	33	1.76
14446195--14446596	29	13.7	30	71	14	207	34	3	28	33	1.74
14446196--14446619	59	7.2	59	80	5	400	34	3	27	34	1.74
14446196--14446628	117	3.7	116	80	5	451	33	3	27	34	1.73
14446635--14446715	30	2.7	30	90	0	117	30	3	27	38	1.74
14446555--14446715	86	1.9	86	79	10	186	31	2	27	39	1.70
14448615--14448646	17	1.9	16	93	6	55	43	0	3	53	1.16
14449001--14449169	49	3.5	49	90	4	236	26	26	14	32	1.95
14449099--14449753	209	3.1	208	86	1	846	22	22	18	36	1.95
14459306--14459794	30	16.8	29	66	17	135	33	2	28	36	1.70
14459301--14459785	59	8.3	57	76	10	419	32	2	28	35	1.71
14459301--14459794	29	17.0	27	67	21	177	32	2	28	35	1.71
14460979--14461032	3	17.7	3	82	3	54	35	1	5	57	1.33
14461202--14461271	6	12.2	6	69	19	51	54	1	1	42	1.18
14461205--14461273	29	2.4	28	88	7	95	55	1	1	42	1.18
14461202--14461271	17	4.4	17	72	22	71	54	1	1	42	1.18
14461222--14461253	11	2.8	12	95	4	57	59	0	0	40	0.97
14475878--14475922	18	2.3	18	85	14	54	60	26	2	11	1.42
14479346--14479402	20	2.8	20	76	12	62	14	3	7	75	1.14
14480356--14480380	11	2.3	11	100	0	50	20	0	0	80	0.72
14485670--14485714	18	2.2	22	85	14	62	60	24	4	11	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14539752--14539921	58	2.9	58	86	6	218	34	4	25	36	1.75
14539762--14539951	29	6.5	28	77	14	165	32	3	25	37	1.74
14587495--14589132	841	1.9	841	93	0	2835	33	14	16	35	1.89
14614746--14614790	18	2.3	18	85	14	54	60	26	2	11	1.42
14621198--14621243	14	3.1	15	75	18	51	36	2	0	60	1.09
14622002--14622070	6	12.0	6	74	11	56	56	2	1	39	1.23
14622003--14622070	11	6.0	11	76	11	66	57	2	1	38	1.23
14622004--14622071	28	2.4	28	83	11	93	58	2	1	36	1.22
14623082--14623123	20	2.0	23	86	13	63	42	7	7	42	1.59
14625225--14625294	6	12.2	6	69	19	51	42	1	1	54	1.18
14625243--14625274	11	2.8	12	95	4	57	40	0	0	59	0.97
14625225--14625268	17	2.6	18	85	10	65	38	0	2	59	1.10
14625225--14625294	17	4.4	17	76	22	62	42	1	1	54	1.18
14625223--14625291	29	2.4	28	88	7	95	42	1	1	55	1.18
14625462--14625503	3	13.7	3	85	5	57	66	2	2	28	1.16
14626640--14627152	30	17.5	29	68	18	131	33	27	4	34	1.76
14626671--14627151	59	8.2	59	78	9	402	33	27	4	34	1.76
14626731--14627151	118	3.6	117	80	8	461	33	28	3	34	1.74
14641252--14641321	6	12.2	6	69	19	51	42	1	1	54	1.18
14641270--14641301	11	2.8	12	95	4	57	40	0	0	59	0.97
14641252--14641295	17	2.6	18	85	10	65	38	0	2	59	1.10
14641252--14641321	17	4.4	17	76	22	62	42	1	1	54	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14641250--14641318	29	2.4	28	88	7	95	42	1	1	55	1.18
14641491--14641535	3	14.7	3	86	4	63	66	2	2	28	1.15
14641477--14641536	18	3.4	16	78	15	57	63	3	3	30	1.27
14642664--14642726	30	2.1	30	88	5	92	31	23	6	38	1.80
14642746--14643112	59	6.3	58	77	8	309	34	28	3	33	1.75
14642681--14643107	30	14.6	30	69	16	145	34	27	4	33	1.76
14642665--14643112	118	3.8	115	76	8	372	33	28	4	33	1.77
14642737--14643108	29	12.8	29	66	15	162	34	27	3	33	1.74
14646976--14647048	23	3.2	23	84	5	67	24	19	12	43	1.85
14646988--14647049	23	2.7	23	94	0	106	22	17	12	46	1.82
14653213--14653875	209	3.2	208	87	3	866	37	18	22	22	1.94
14654240--14654300	18	3.4	18	76	17	63	40	0	1	57	1.08
14654240--14654323	42	2.0	41	86	2	114	45	1	1	52	1.16
14654254--14654305	24	2.2	24	82	6	61	48	0	1	50	1.12
14654240--14654305	6	11.0	6	72	6	53	43	0	1	54	1.09
14656299--14656782	59	8.2	59	81	6	522	35	27	2	34	1.71
14656290--14656782	117	4.2	118	83	4	629	35	27	2	34	1.71
14656309--14656783	29	16.1	30	72	15	309	34	27	2	35	1.71
14656299--14656782	176	2.7	175	81	8	570	35	27	2	34	1.71
14671023--14671556	266	2.0	266	100	0	1068	36	17	8	37	1.81
14684048--14684098	24	2.1	24	88	0	75	21	13	11	52	1.72
14684056--14684109	24	2.2	24	83	0	63	25	16	12	44	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14732118--14732148	11	2.7	12	95	5	55	38	0	0	61	0.96
14732100--14732143	17	2.6	18	85	10	65	38	0	2	59	1.10
14732339--14732391	3	17.7	3	86	0	52	56	3	3	35	1.35
14733489--14733561	30	2.4	30	88	0	101	39	27	5	27	1.78
14733507--14733569	30	2.1	30	93	0	108	34	26	4	33	1.78
14733583--14734008	59	7.3	59	79	5	418	34	27	3	35	1.73
14733584--14734034	117	3.8	118	81	4	509	33	27	3	35	1.76
14733583--14734034	176	2.6	176	80	5	495	33	27	3	34	1.76
14740694--14740865	29	5.9	29	74	9	152	31	2	26	38	1.71
14740694--14740870	59	3.0	60	81	8	177	31	3	27	37	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132