genome.fa.s12.2.7.7.80.10.50.1000.71.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  71  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20576616--20576729	17	6.7	16	70	10	66	23	21	10	43	1.84
20576612--20576714	51	2.0	51	92	0	170	25	21	11	41	1.86
20581449--20581514	24	2.7	23	79	9	69	1	39	1	57	1.17
20603496--20603526	16	1.9	16	93	0	53	22	6	0	70	1.09
20608286--20608350	33	2.0	33	84	6	87	44	13	20	21	1.86
20617241--20617288	22	2.2	21	77	3	51	37	20	0	41	1.53
20618355--20618387	16	2.1	16	100	0	66	30	39	6	24	1.79
20619585--20619952	29	12.8	28	68	14	119	32	4	26	36	1.77
20619609--20619788	57	3.1	56	73	11	159	31	5	27	35	1.80
20619632--20619818	86	2.2	87	86	3	261	32	6	27	33	1.82
20619585--20619788	58	3.6	56	73	12	164	32	4	26	35	1.78
20619708--20619964	115	2.2	115	80	11	285	33	4	26	36	1.76
20619786--20619965	57	3.1	57	73	7	157	34	3	25	36	1.75
20619786--20619965	30	6.2	28	72	15	102	34	3	25	36	1.75
20620922--20620977	28	2.0	27	82	10	67	33	1	3	60	1.24
20621566--20621623	16	3.6	16	81	4	80	55	3	1	39	1.27
20621569--20621648	33	2.4	33	87	6	117	56	3	2	37	1.31
20621566--20621630	16	3.9	16	80	6	76	55	4	1	38	1.30
20621573--20621648	16	4.6	17	72	9	59	57	3	2	35	1.31
20627042--20627106	29	2.2	30	80	5	78	40	4	20	35	1.73
20627124--20627183	28	2.1	28	84	0	75	33	5	25	36	1.78
20627114--20627449	30	11.4	30	74	12	184	32	5	25	36	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20627114--20627449	59	5.7	58	72	16	176	32	5	25	36	1.78
20627228--20627511	89	3.2	87	75	9	261	34	3	24	38	1.71
20627284--20627521	30	8.0	30	77	10	163	34	2	24	37	1.71
20628327--20628360	17	2.0	17	94	0	59	0	20	0	79	0.73
20628327--20628359	6	5.5	6	89	10	50	0	18	0	81	0.68
20629160--20629236	17	4.6	16	79	7	66	54	5	3	36	1.41
20629162--20629236	34	2.2	33	83	4	96	54	5	4	36	1.42
20629674--20630541	39	22.3	39	76	10	704	24	20	32	23	1.98
20646123--20646292	29	5.8	29	80	5	155	34	4	25	35	1.75
20646121--20646298	87	2.0	86	80	4	196	35	3	25	35	1.75
20646161--20646309	58	2.6	58	83	4	167	38	5	24	31	1.78
20646219--20646419	29	6.9	29	79	9	162	37	5	23	32	1.78
20646199--20646378	57	3.1	56	82	7	193	36	5	25	33	1.78
20650680--20650750	37	1.9	37	82	0	88	40	16	16	25	1.90
20650553--20651072	172	3.2	159	85	8	693	38	18	20	22	1.93
20650840--20651336	209	2.4	209	86	2	692	36	17	23	22	1.95
20652347--20652402	31	1.9	29	82	13	71	57	1	0	41	1.09
20652347--20652409	30	2.1	31	82	8	76	53	1	1	42	1.19
20653563--20653733	29	5.8	30	76	10	140	35	25	4	35	1.75
20653563--20653633	30	2.4	29	85	2	88	39	19	4	36	1.71
20653622--20653746	58	2.2	57	82	5	144	36	27	4	32	1.75
20653651--20653789	29	4.8	29	81	3	138	35	28	4	30	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20654068--20654261	97	2.0	97	84	2	255	26	18	17	37	1.93
20660032--20660106	28	2.6	31	79	12	79	30	4	24	41	1.73
20660100--20660164	29	2.2	29	83	0	76	33	3	26	36	1.72
20660115--20660267	29	5.3	29	82	4	157	33	3	26	36	1.73
20660115--20660268	57	2.7	58	83	2	166	34	3	25	36	1.73
20660254--20660567	30	10.6	29	77	11	164	35	2	24	38	1.69
20660309--20660574	30	9.0	30	79	8	224	36	2	23	37	1.68
20660279--20660574	60	5.0	59	80	7	296	35	2	23	38	1.68
20662262--20662297	14	2.6	14	90	0	54	19	5	19	55	1.62
20665408--20665446	17	2.4	17	87	12	55	51	15	17	15	1.77
20665881--20665929	27	1.9	26	88	12	75	8	38	6	46	1.58
20670185--20670303	34	3.5	34	85	0	157	36	33	12	17	1.88
20673737--20673809	37	2.0	37	86	2	103	28	28	17	24	1.98
20674705--20674735	16	1.9	16	93	0	53	22	16	0	61	1.34
20701124--20701189	34	1.9	34	100	0	132	33	3	22	40	1.69
20707274--20707300	13	2.1	13	100	0	54	51	14	18	14	1.76
20711421--20711486	34	1.9	34	84	6	89	22	19	10	46	1.80
20717130--20717257	60	2.2	60	97	1	240	34	28	4	32	1.78
20728282--20728365	36	2.3	38	81	8	102	34	29	10	25	1.90
20729407--20729483	24	3.3	24	66	20	63	42	20	6	29	1.77
20729390--20729494	46	2.3	46	93	0	174	41	21	6	29	1.79
20731685--20731759	32	2.3	32	90	4	116	53	20	1	25	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20731926--20731960	12	2.9	12	95	0	61	0	31	2	65	1.07
20739722--20740361	38	16.6	39	71	13	373	25	17	22	34	1.96
20739687--20740361	77	8.8	78	75	10	432	25	17	22	34	1.96
20740097--20740369	115	2.4	116	88	3	390	26	16	23	33	1.96
20744910--20744940	14	2.2	14	94	0	53	70	0	29	0	0.87
20756748--20756776	14	2.0	15	93	6	51	17	0	0	82	0.66
20759230--20759270	19	2.2	19	86	0	55	31	14	2	51	1.56
20760539--20760598	27	2.2	27	80	13	70	66	0	0	33	0.92
20760561--20760622	26	2.4	26	81	10	74	64	0	0	35	0.94
20761789--20761830	21	2.0	21	86	4	59	40	14	9	35	1.78
20762024--20762057	5	6.8	5	96	0	59	20	44	20	14	1.87
20762875--20762926	21	2.5	20	75	3	50	53	3	7	34	1.48
20762940--20762998	26	2.3	26	76	5	66	69	5	0	25	1.09
20769672--20769856	92	2.0	92	95	0	334	34	15	24	25	1.95
20772892--20772926	16	2.2	16	89	0	52	68	0	2	28	1.04
20773139--20773312	85	2.0	85	94	0	303	42	16	21	18	1.89
20773664--20773717	27	2.0	27	100	0	108	22	7	18	51	1.70
20773792--20773842	27	1.9	27	84	4	68	52	7	9	29	1.62
20778954--20778980	14	1.9	14	100	0	54	44	11	14	29	1.80
20794212--20794263	21	2.5	21	80	0	59	32	9	23	34	1.87
20795684--20795723	2	20.0	2	89	0	62	55	0	0	45	0.99
20797719--20797754	19	1.9	19	88	5	56	16	5	11	66	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20799474--20799529	21	2.7	21	82	0	76	33	8	21	35	1.85
20804160--20804360	62	3.2	59	73	16	181	41	1	3	52	1.31
20811100--20811141	3	14.0	3	100	0	84	66	0	0	33	0.92
20811218--20811281	10	6.1	10	75	13	58	70	3	6	20	1.23
20812032--20812069	20	1.9	20	88	0	58	50	2	0	47	1.15
20812104--20812150	24	2.0	25	83	8	62	53	6	2	38	1.39
20811833--20812409	141	4.0	143	82	7	670	44	8	3	43	1.51
20812154--20812360	51	4.2	51	68	15	153	45	7	2	43	1.47
20811827--20812428	148	4.1	147	82	8	666	44	8	3	44	1.50
20813169--20813599	42	10.3	42	82	3	474	38	22	17	21	1.93
20813169--20813599	126	3.4	125	84	2	526	38	22	17	21	1.93
20814341--20814550	109	1.9	109	88	0	312	39	15	14	31	1.87
20816216--20816244	15	1.9	15	100	0	58	27	27	13	31	1.94
20826276--20826323	21	2.3	20	79	13	53	27	12	31	29	1.93
20838662--20838686	12	2.1	12	100	0	50	40	16	0	44	1.47
20851798--20851831	14	2.4	14	100	0	68	32	29	8	29	1.87
20855260--20855582	30	11.1	29	74	14	240	34	27	4	33	1.76
20855260--20855574	59	5.4	58	78	10	234	34	26	4	34	1.76
20855255--20855582	29	11.2	28	76	12	229	34	28	4	33	1.77
20857459--20857493	12	2.9	12	82	0	52	45	14	22	17	1.84
20863549--20864465	50	18.7	50	72	5	517	33	16	30	19	1.94
20863549--20863953	94	4.2	97	84	4	507	33	15	31	19	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20863931--20864465	99	5.4	99	81	0	559	33	16	30	19	1.94
20863932--20864465	198	2.7	198	81	2	615	33	16	30	19	1.94
20866519--20866844	30	11.0	29	76	12	213	33	25	4	36	1.77
20866652--20866844	89	2.2	88	85	7	250	33	26	4	35	1.77
20871906--20871949	22	2.0	22	100	0	88	27	9	13	50	1.72
20873151--20873385	51	4.7	50	70	17	123	44	8	2	43	1.50
20873116--20873569	148	3.1	148	89	1	642	43	9	2	44	1.51
20873285--20873497	51	4.2	50	67	16	145	43	8	3	43	1.53
20873285--20873524	51	4.8	50	68	15	138	43	8	3	44	1.50
20878206--20878304	33	3.0	33	92	0	162	29	26	14	30	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132