genome.fa.s12.2.7.7.80.10.50.1000.129.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  129  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39982955--39983000	23	2.0	23	95	0	83	50	0	2	47	1.13
39985086--39985162	24	3.2	25	73	10	79	41	3	0	54	1.19
39985082--39985164	25	3.4	25	67	12	73	42	3	0	54	1.18
39986005--39986195	36	5.4	36	84	1	242	24	8	23	43	1.82
39986021--39986195	72	2.4	72	88	0	269	22	9	24	43	1.82
39986321--39986348	2	14.0	2	100	0	56	50	0	0	50	1.00
39998598--39998654	6	9.8	6	75	7	55	52	3	0	43	1.18
39998605--39998660	17	3.3	17	80	9	69	55	3	0	41	1.17
40000547--40000592	21	2.2	21	77	11	51	39	13	23	23	1.90
40006187--40006231	14	3.1	15	75	12	58	66	4	0	28	1.11
40006358--40006435	28	2.7	30	76	11	90	37	0	3	58	1.16
40010570--40010611	22	1.9	22	85	0	57	14	26	19	40	1.89
40014534--40015098	140	4.0	140	97	0	1022	36	24	17	22	1.95
40022518--40022661	30	4.8	30	87	5	204	37	18	1	43	1.59
40026048--40026179	46	2.9	45	79	3	147	27	25	15	31	1.95
40026225--40026758	209	2.6	208	84	1	692	38	16	20	23	1.93
40026608--40026765	85	1.9	85	87	2	237	38	13	22	25	1.91
40026693--40026813	48	2.5	48	94	0	206	38	12	23	25	1.90
40026482--40027023	257	2.1	258	84	2	687	38	16	21	23	1.92
40026693--40026830	48	2.9	48	88	0	150	40	13	21	24	1.89
40026741--40027128	210	1.8	210	86	3	557	39	16	21	22	1.92
40027072--40027197	49	2.6	49	85	0	162	38	11	23	26	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40026951--40027323	173	2.2	171	86	3	514	39	15	22	23	1.91
40026701--40027429	382	1.9	382	82	2	917	39	15	22	23	1.91
40027301--40027577	85	3.3	84	74	5	245	38	14	23	24	1.91
40029594--40029694	30	3.4	31	79	5	100	31	28	3	35	1.76
40029587--40029712	30	4.2	29	75	13	78	34	26	3	35	1.75
40029643--40029732	30	3.0	30	74	16	71	33	22	4	40	1.74
40032925--40032971	23	1.9	26	87	12	73	51	4	4	40	1.41
40042262--40042311	18	2.8	18	88	11	68	30	0	2	68	1.01
40044834--40044896	31	2.1	29	82	11	74	46	1	12	39	1.52
40047916--40048006	42	2.1	42	93	2	155	12	29	10	47	1.75
40047929--40048019	42	2.2	41	86	7	121	14	28	12	45	1.80
40051911--40051959	4	12.2	4	79	16	57	71	0	26	2	0.97
40056736--40056778	21	2.1	21	91	4	70	62	11	0	25	1.29
40056931--40056956	12	2.2	12	100	0	52	50	0	0	50	1.00
40057148--40057195	4	12.0	4	78	8	53	0	22	0	77	0.78
40057151--40057189	12	3.2	12	92	7	69	0	17	0	82	0.68
40057123--40057200	36	2.2	36	83	0	93	1	25	0	73	0.91
40057145--40057201	11	4.9	11	81	12	60	1	22	0	75	0.90
40057124--40057200	12	6.3	13	72	14	65	1	25	0	72	0.92
40057944--40058013	35	2.0	35	94	0	122	28	17	14	40	1.88
40058065--40058141	37	2.1	37	95	0	136	32	3	2	61	1.28
40058406--40058447	17	2.6	16	88	3	57	28	4	0	66	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40058826--40058877	25	2.1	25	92	0	86	59	9	9	21	1.57
40061312--40061388	38	2.0	39	89	2	120	40	11	11	36	1.78
40063246--40063287	18	2.3	18	84	8	50	59	4	4	30	1.39
40064216--40064720	76	6.7	76	86	4	684	40	26	8	24	1.83
40064782--40064915	42	3.2	42	84	6	164	12	29	12	44	1.80
40064794--40064936	42	3.4	42	83	1	117	13	30	11	44	1.78
40065403--40065436	17	2.0	17	88	11	52	29	0	5	64	1.17
40070483--40070514	11	2.9	11	100	0	64	37	9	0	53	1.34
40072267--40072335	4	18.2	4	82	11	92	47	0	26	26	1.52
40072271--40072335	22	3.0	22	88	0	94	47	0	26	26	1.52
40072265--40072335	26	2.7	26	97	0	133	47	0	25	26	1.52
40072267--40072369	34	3.2	33	81	10	90	49	0	23	26	1.56
40072313--40072378	34	1.9	34	100	0	132	53	3	18	25	1.59
40074324--40074405	23	3.5	24	80	9	89	39	19	12	29	1.88
40075186--40075218	13	2.4	14	90	10	50	6	30	6	57	1.47
40083641--40083716	34	2.2	34	88	0	116	31	17	1	50	1.54
40088203--40088366	76	2.1	77	95	3	294	45	28	4	21	1.73
40091372--40091408	16	2.2	17	90	9	58	43	0	0	56	0.99
40092262--40092302	14	2.9	14	85	3	55	21	2	7	68	1.26
40092767--40092825	23	2.6	22	76	5	64	45	1	0	52	1.10
40097727--40097752	2	13.0	2	100	0	52	50	0	0	50	1.00
40103296--40103333	18	2.1	19	85	5	51	34	0	2	63	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40111761--40111820	31	1.9	31	86	0	84	33	1	6	58	1.34
40112560--40112597	18	2.1	19	90	5	60	28	0	7	63	1.23
40113091--40113146	26	2.1	27	83	6	71	37	5	5	51	1.47
40114320--40114353	16	2.1	16	88	0	50	26	0	5	67	1.13
40115019--40115083	32	2.0	32	87	0	94	15	20	15	49	1.80
40121408--40121456	22	2.2	22	85	7	64	79	0	14	6	0.91
40121408--40121449	12	3.7	11	81	15	50	80	0	14	4	0.86
40130406--40130473	24	2.9	23	79	10	75	45	11	2	39	1.56
40131056--40131105	27	1.9	25	84	8	64	56	0	0	44	0.99
40134119--40134180	31	2.1	28	82	11	72	43	14	8	33	1.75
40162374--40163090	364	2.0	363	92	1	1204	26	16	20	36	1.93
40167575--40168291	364	2.0	363	92	1	1204	26	16	20	36	1.93
40169347--40169392	23	2.0	23	86	0	65	41	13	13	32	1.82
40171600--40171624	13	1.9	13	100	0	50	28	0	0	72	0.86
40183326--40183380	29	1.9	29	85	10	78	40	9	16	34	1.80
40184225--40184257	2	16.5	2	93	0	57	3	0	45	51	1.16
40188964--40189027	31	2.1	31	87	0	92	43	12	7	35	1.71
40189574--40189615	15	2.6	17	82	14	54	40	0	9	50	1.35
40190019--40190052	15	2.3	15	89	0	50	50	23	2	23	1.63
40195332--40195381	16	3.1	16	76	2	55	30	2	2	66	1.14
40199269--40199326	11	4.9	11	74	14	53	6	13	0	79	0.93
40199275--40199316	12	3.7	11	84	12	50	9	11	0	78	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40204142--40204184	22	2.0	23	86	9	63	32	6	6	53	1.55
40212994--40213128	59	2.2	60	79	7	141	46	15	11	26	1.79
40219623--40219660	20	1.9	20	94	0	67	68	2	0	28	1.03
40225428--40225452	3	8.3	3	100	0	50	68	0	0	32	0.90
40245941--40246104	69	2.4	69	91	1	265	30	15	18	35	1.92
40248472--40248529	28	2.1	28	96	0	107	32	3	5	58	1.37
40256302--40256334	17	1.9	18	88	11	52	63	6	6	24	1.40
40257947--40258218	136	2.0	136	97	0	508	28	11	12	47	1.76
40268525--40268574	2	25.0	2	100	0	100	50	0	0	50	1.00
40301371--40301429	2	29.5	2	100	0	118	49	0	0	50	1.00
40306162--40306347	98	1.9	98	90	0	300	28	21	13	36	1.92
40306260--40306495	129	1.8	129	83	5	316	29	19	15	34	1.93
40306887--40306949	28	2.2	30	83	11	78	63	4	1	30	1.24
40309251--40309436	98	1.9	98	90	0	300	29	21	13	35	1.92
40309349--40309584	129	1.8	129	87	3	350	28	19	16	35	1.94
40317189--40317707	201	2.6	201	83	5	625	30	12	9	47	1.72
40317791--40317859	6	11.8	6	70	11	54	43	2	1	52	1.25
40317825--40317858	18	1.9	18	94	5	61	41	2	0	55	1.15
40318526--40318566	21	2.0	20	90	4	64	53	0	0	46	1.00
40318546--40318637	13	7.2	13	71	13	57	52	2	5	40	1.37
40318526--40318572	12	3.9	12	75	10	51	53	0	0	46	1.00
40318598--40318634	11	3.2	11	92	7	56	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40319696--40319905	29	7.1	29	70	20	98	33	26	1	38	1.67
40319742--40319929	58	3.2	57	84	5	236	35	25	1	38	1.66
40326641--40326716	15	5.1	15	77	15	61	81	5	10	2	0.94
40326641--40326716	6	12.5	6	77	13	59	81	5	10	2	0.94
40327557--40327976	51	8.3	51	70	8	268	38	22	25	12	1.90
40327557--40328028	101	4.7	101	87	1	669	38	22	25	13	1.90
40327557--40328020	201	2.3	202	87	1	671	39	22	25	13	1.90
40328444--40328503	20	3.3	17	80	15	66	36	3	1	58	1.25
40341592--40341624	10	3.5	10	88	12	52	60	6	0	33	1.21
40344406--40344491	21	3.8	21	72	21	84	48	5	0	45	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132