genome.fa.s12.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  7  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1901544--1901911	29	12.6	30	77	10	273	35	26	4	33	1.75
1901546--1901911	57	6.3	59	78	7	302	35	26	4	33	1.75
1901848--1902353	144	3.5	143	75	10	415	30	25	8	34	1.86
1902283--1902347	28	2.3	29	79	15	73	33	21	4	40	1.74
1902581--1902768	98	1.9	97	80	7	220	30	15	11	42	1.83
1903876--1903922	24	2.0	24	95	0	85	48	17	14	19	1.81
1904645--1904720	11	6.8	11	77	8	82	43	2	1	52	1.23
1904645--1904736	17	5.5	16	76	14	80	44	2	1	52	1.20
1904648--1904719	6	12.7	6	75	16	64	41	2	1	54	1.23
1905903--1905929	11	2.5	11	100	0	54	7	29	55	7	1.55
1906331--1906641	162	1.9	162	95	1	561	24	16	13	46	1.82
1906742--1907166	58	7.4	58	91	2	696	32	29	3	34	1.74
1913951--1914065	51	2.2	53	80	7	130	33	18	7	40	1.79
1913970--1914083	51	2.2	51	83	6	133	31	17	7	42	1.78
1914525--1914583	30	1.9	30	83	16	77	57	1	0	40	1.09
1915677--1915733	15	3.7	15	90	4	87	21	1	14	63	1.39
1926399--1926462	29	2.2	29	82	2	74	40	4	10	43	1.61
1929656--1929699	22	2.0	23	86	4	63	18	0	34	47	1.49
1930253--1930315	19	3.1	19	78	19	65	55	4	1	38	1.31
1930280--1930325	23	2.0	24	82	4	58	56	2	2	39	1.24
1946417--1946556	51	2.7	51	84	4	176	41	10	17	31	1.82
1952396--1952450	23	2.4	22	82	8	65	43	3	1	50	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1952379--1952451	6	12.7	6	72	18	57	42	4	1	52	1.29
1952399--1952466	17	3.9	17	80	16	61	44	2	1	51	1.25
1952379--1952451	11	6.3	12	74	16	57	42	4	1	52	1.29
1952376--1952452	12	6.8	11	76	10	75	44	3	1	50	1.28
1953986--1954299	162	1.9	162	87	3	463	26	15	11	46	1.80
1954396--1954618	30	7.4	30	89	2	331	37	21	3	37	1.71
1954606--1954760	30	5.2	30	64	12	77	32	26	5	35	1.79
1954396--1954889	59	8.3	58	82	9	318	34	25	4	36	1.75
1954576--1954890	59	5.3	59	86	2	411	32	26	4	36	1.77
1958297--1958401	54	1.9	54	92	0	174	36	21	10	31	1.88
1961820--1961869	25	2.0	26	88	7	77	30	0	2	68	1.01
1963620--1963667	15	3.1	16	73	11	55	58	0	12	29	1.35
1967037--1967069	13	2.5	13	85	14	50	3	0	51	45	1.16
1973245--1973294	17	2.8	18	82	11	59	74	2	0	24	0.93
1973242--1973294	18	3.1	17	79	12	56	73	1	0	24	0.93
1973646--1973702	21	2.7	21	75	0	60	28	21	0	50	1.48
1973692--1973756	14	4.7	14	70	9	53	21	18	6	53	1.66
1973692--1973763	27	2.6	28	85	10	87	22	19	5	52	1.66
1973707--1973763	27	2.1	28	93	3	98	22	19	5	52	1.66
1973713--1973773	27	2.2	28	80	8	72	26	16	3	54	1.58
1973870--1973968	51	1.9	51	89	4	155	41	1	6	51	1.33
1977227--1977307	31	2.6	31	81	9	103	44	3	1	50	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1978174--1978199	2	13.0	2	100	0	52	50	0	0	50	1.00
1983441--1983488	18	2.7	18	78	18	55	68	2	0	29	1.01
1985885--1985992	36	3.0	36	83	0	144	37	28	22	12	1.90
1986353--1986385	15	2.2	15	100	0	66	27	6	21	45	1.75
1987282--1987321	15	2.5	16	84	8	55	35	2	0	62	1.09
1987302--1987361	30	2.0	31	86	3	86	40	1	5	53	1.33
1987557--1987587	11	2.8	11	95	0	53	61	0	0	38	0.96
2003955--2004496	267	2.0	267	99	0	1075	27	23	21	26	1.99
2006393--2006474	22	3.5	22	73	16	76	42	19	26	10	1.84
2006393--2006484	48	1.9	48	91	4	150	41	19	26	13	1.88
2006395--2006530	23	5.9	23	78	7	96	39	22	25	13	1.90
2006393--2006532	46	3.0	49	83	5	146	41	21	24	12	1.88
2006442--2006532	23	4.0	23	86	0	119	40	23	23	13	1.89
2008382--2008411	14	2.1	14	93	0	51	16	20	36	26	1.93
2008953--2008987	16	2.3	15	90	5	52	45	0	25	28	1.54
2011632--2011741	58	1.9	58	81	3	132	50	13	5	30	1.64
2012543--2012632	44	2.0	44	100	0	180	50	8	15	25	1.73
2012550--2012623	25	3.2	25	63	21	70	50	9	14	25	1.73
2024497--2024816	59	5.4	59	88	1	464	35	5	28	31	1.79
2024498--2024814	117	2.7	118	89	2	469	35	5	28	31	1.79
2024497--2024817	176	1.8	177	91	2	538	35	4	28	31	1.79
2024808--2025088	30	9.3	30	91	1	429	37	2	21	38	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2026782--2026815	14	2.4	14	95	0	59	14	17	32	35	1.91
2026845--2026951	48	2.2	48	81	6	119	48	1	0	48	1.18
2026874--2026936	31	2.0	31	87	0	90	50	3	0	46	1.17
2026844--2026951	6	18.0	6	75	14	89	48	1	0	49	1.18
2026847--2026942	42	2.2	43	80	15	110	47	2	1	48	1.20
2027268--2027750	69	7.0	68	93	1	831	26	19	19	34	1.96
2027268--2027750	137	3.5	136	93	1	831	26	19	19	34	1.96
2027270--2027750	206	2.3	206	97	0	890	26	19	19	34	1.96
2039693--2039776	29	2.8	30	75	8	91	39	3	25	32	1.73
2039667--2039925	59	4.4	59	88	1	360	34	5	28	31	1.80
2039704--2039922	30	7.5	29	70	9	158	36	5	27	31	1.78
2039668--2039924	117	2.2	119	88	3	378	34	5	28	31	1.79
2039916--2040252	30	11.2	30	94	0	559	35	2	23	38	1.67
2041110--2041396	29	9.8	29	69	14	169	36	4	27	31	1.77
2041082--2041398	59	5.4	59	88	0	458	35	4	28	31	1.78
2041390--2041639	30	8.3	30	93	0	421	36	2	22	38	1.69
2041117--2041609	60	8.3	58	84	7	328	36	3	25	34	1.73
2042464--2042778	29	10.8	28	67	13	136	35	4	28	32	1.76
2042464--2042780	59	5.4	59	92	0	503	35	4	28	32	1.76
2042772--2042991	30	7.3	30	92	1	361	37	3	21	38	1.70
2042464--2042986	60	8.8	56	85	6	299	36	3	25	34	1.74
2044688--2044721	14	2.4	14	95	0	59	14	17	32	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2044750--2044857	6	18.0	6	73	14	80	47	2	0	49	1.22
2044780--2044842	31	2.0	31	84	0	81	49	4	0	46	1.23
2044821--2044857	16	2.2	17	90	4	58	59	2	0	37	1.12
2045941--2045986	25	1.9	25	86	8	69	32	4	6	56	1.45
2055240--2055298	31	2.0	30	83	6	75	32	5	15	47	1.67
2061675--2061756	43	1.9	43	87	0	119	21	13	6	58	1.57
2061763--2061806	21	2.1	21	100	0	88	18	9	9	63	1.49
2061769--2061816	21	2.4	20	86	6	62	22	6	4	66	1.32
2061881--2061931	20	2.4	22	80	6	61	31	3	1	62	1.24
2062242--2062628	195	2.0	195	95	0	693	36	20	18	24	1.95
2069035--2069072	20	1.9	20	88	0	58	63	0	2	34	1.09
2073227--2073386	59	2.8	58	85	4	207	33	8	30	28	1.86
2073400--2073653	30	8.5	31	86	4	278	35	2	24	37	1.70
2073397--2073653	90	2.9	89	84	7	324	35	2	24	36	1.70
2073397--2073665	60	4.5	60	85	2	328	35	2	24	37	1.71
2074682--2074738	25	2.2	26	87	6	89	47	1	1	49	1.22
2075371--2075439	17	4.1	16	83	12	77	52	2	1	43	1.25
2075388--2075432	6	7.8	6	80	9	58	51	2	2	44	1.26
2075387--2075440	11	4.8	11	84	4	72	51	1	1	44	1.22
2075892--2076069	31	5.3	31	66	18	106	26	19	17	36	1.94
2075776--2076378	137	4.5	137	87	5	870	27	20	16	35	1.94
2075776--2076378	68	9.0	68	87	4	823	27	20	16	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2075988--2076099	38	3.1	38	67	17	112	29	21	13	35	1.91
2075778--2076378	195	3.0	200	86	6	811	27	20	16	35	1.94
2076153--2076339	31	5.7	29	70	25	124	26	20	18	35	1.95
2075974--2076361	127	3.0	128	86	7	548	26	21	16	35	1.94
2076110--2076378	37	7.7	37	68	21	188	27	20	17	35	1.94
2088494--2088627	59	2.3	59	87	3	182	35	6	27	29	1.83
2088660--2088887	30	7.6	29	88	4	287	36	3	23	36	1.71
2088632--2088887	89	2.9	89	83	7	322	35	2	24	36	1.70
2088643--2088874	119	1.9	120	86	4	335	37	2	22	37	1.67
2088632--2088899	60	4.5	60	83	2	317	35	2	24	36	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132