genome.fa.s12.2.7.7.80.10.50.1000.22.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Length:  41238926

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   

This is table  22  of  132  ( 15769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6398856--6398882	2	13.5	2	100	0	54	48	0	0	51	1.00
6400762--6400800	16	2.4	16	83	12	53	35	0	0	64	0.94
6400758--6400823	23	2.8	23	82	11	64	33	0	0	66	0.92
6400771--6400821	16	3.2	16	78	10	52	31	0	0	68	0.90
6400767--6400823	25	2.2	25	81	12	62	33	0	0	66	0.92
6405567--6405616	24	2.1	24	85	7	66	42	0	2	56	1.11
6405897--6405935	14	2.9	14	85	7	55	0	17	0	82	0.68
6408305--6408349	23	2.0	23	86	0	63	35	20	13	31	1.91
6414593--6414626	17	2.0	17	94	0	59	44	0	2	52	1.16
6415385--6415417	16	2.0	17	94	5	59	42	0	0	57	0.98
6415409--6415436	13	2.2	13	100	0	56	50	0	0	50	1.00
6417385--6417409	6	4.2	6	100	0	50	16	36	32	16	1.90
6426820--6426891	20	3.7	19	79	7	74	59	5	0	34	1.21
6426859--6426915	25	2.2	27	87	6	82	57	1	0	40	1.09
6432142--6432529	127	3.0	127	94	4	643	34	9	8	47	1.67
6456737--6456761	2	12.5	2	100	0	50	52	0	0	48	1.00
6457243--6457303	28	2.2	28	79	5	70	27	11	27	32	1.91
6457406--6457632	29	7.7	29	78	7	190	34	2	26	36	1.71
6457429--6457621	88	2.2	88	86	5	257	36	2	25	35	1.70
6457410--6457643	59	4.0	60	80	8	232	35	2	26	35	1.72
6458162--6458188	11	2.5	11	100	0	54	14	7	0	77	0.97
6458955--6459063	17	6.4	17	86	2	155	55	2	0	41	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6459696--6459727	14	2.2	15	94	5	57	34	0	0	65	0.93
6460405--6460451	20	2.3	20	85	0	58	40	8	21	29	1.83
6460530--6460564	17	1.9	17	88	11	52	31	11	8	48	1.69
6466078--6466135	3	20.0	3	85	7	84	31	1	1	65	1.13
6466134--6466178	3	15.0	3	100	0	90	0	0	33	66	0.92
6466211--6466265	11	4.9	11	85	14	69	45	0	0	54	0.99
6466211--6466254	6	7.7	6	90	10	74	45	0	0	54	0.99
6466211--6466265	17	3.2	17	94	5	94	45	0	0	54	0.99
6468208--6468312	29	3.5	28	77	6	84	42	20	3	33	1.70
6468228--6468348	29	4.1	30	82	5	156	37	23	4	34	1.74
6468228--6468348	60	2.0	59	90	1	188	37	23	4	34	1.74
6468331--6468685	146	2.4	146	79	3	385	31	25	8	34	1.86
6472340--6472367	4	7.0	4	100	0	56	25	25	0	50	1.50
6480412--6481421	92	11.0	92	95	0	1795	34	12	16	35	1.87
6481676--6481733	17	3.5	17	90	4	93	43	0	0	56	0.99
6481676--6481733	6	10.5	6	71	17	54	43	0	0	56	0.99
6481693--6481769	28	2.8	26	75	11	73	42	0	2	54	1.14
6483694--6483948	29	8.6	30	76	8	179	38	23	3	34	1.72
6483694--6483948	60	4.3	58	80	4	226	38	23	3	34	1.72
6483691--6483944	89	2.9	87	80	8	246	38	22	3	35	1.72
6483746--6483963	118	1.8	117	82	7	280	39	23	3	33	1.73
6484046--6484107	28	2.2	28	85	5	81	32	29	11	27	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6483929--6484251	145	2.2	145	83	6	413	31	25	8	34	1.86
6485668--6485694	12	2.2	12	100	0	54	51	7	0	40	1.30
6488301--6488346	14	3.4	14	77	17	60	41	30	4	23	1.74
6488287--6488350	27	2.4	27	92	2	103	40	31	3	25	1.71
6493268--6493314	13	3.5	13	72	16	51	40	29	2	27	1.68
6493267--6493330	27	2.4	27	94	2	112	37	31	3	28	1.73
6495396--6495421	2	13.0	2	100	0	52	50	0	0	50	1.00
6495501--6495534	16	2.1	16	89	10	52	70	0	2	26	1.01
6495496--6495534	15	2.6	15	88	8	53	69	0	2	28	1.02
6495495--6495564	30	2.3	29	78	9	77	65	0	1	32	1.01
6499540--6499581	16	2.5	17	80	7	50	35	2	9	52	1.47
6513919--6513952	17	2.0	17	88	0	50	64	5	5	23	1.38
6521964--6522017	27	2.0	27	100	0	108	37	3	11	48	1.57
6524584--6524673	44	2.0	46	85	8	123	31	5	26	36	1.79
6529172--6529619	195	2.3	194	81	6	496	27	18	27	26	1.98
6530326--6530437	50	2.2	50	100	0	224	26	9	25	38	1.87
6530426--6530477	21	2.5	21	75	6	52	28	13	26	30	1.94
6534016--6534045	15	2.1	14	93	6	51	36	0	6	56	1.26
6536556--6536878	41	7.9	41	83	3	221	31	20	30	17	1.96
6536581--6536877	82	3.6	82	86	0	398	30	20	31	16	1.95
6536577--6536877	123	2.5	123	87	3	428	31	20	31	16	1.95
6538787--6538889	54	1.9	54	84	4	136	43	8	0	47	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6538755--6538960	88	2.4	83	90	7	313	46	10	0	42	1.41
6538841--6538921	34	2.4	34	85	0	99	46	9	0	43	1.37
6538865--6539335	98	4.6	98	74	10	429	46	9	0	43	1.38
6538834--6539092	132	2.0	132	94	0	455	47	10	0	42	1.38
6538977--6539055	34	2.3	34	86	0	104	46	12	0	40	1.42
6539008--6539335	50	7.0	50	69	13	160	46	8	0	44	1.37
6539047--6539139	34	2.7	34	80	3	89	45	7	0	47	1.31
6539185--6539251	8	8.1	8	77	6	53	41	4	0	53	1.21
6538755--6539406	314	2.1	304	91	3	1052	46	10	0	42	1.40
6539179--6539558	132	2.9	132	96	1	696	47	9	0	42	1.37
6539050--6539467	230	1.8	230	92	1	712	46	9	0	44	1.37
6539283--6539497	34	6.4	34	72	11	133	46	10	0	42	1.41
6539477--6539506	4	7.5	4	92	0	51	50	0	0	50	1.00
6539526--6539589	18	3.2	21	82	17	91	43	1	0	54	1.09
6539540--6539575	8	4.2	8	86	13	54	38	0	0	61	0.96
6542667--6542892	43	5.3	43	76	8	185	22	16	27	33	1.95
6542623--6542891	85	3.1	85	81	4	310	24	16	27	31	1.96
6548229--6549250	484	2.1	483	93	0	1742	32	16	19	31	1.94
6548879--6549627	377	2.0	378	93	0	1275	33	18	18	29	1.95
6548384--6550111	861	2.0	861	94	0	2999	32	17	19	30	1.95
6549245--6550450	241	5.0	242	84	3	1640	33	16	19	30	1.94
6549245--6550747	484	3.2	483	89	3	2315	33	16	19	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6550239--6550669	219	2.0	218	87	3	625	32	14	20	31	1.93
6554565--6554602	2	19.0	2	100	0	76	50	0	0	50	1.00
6558097--6558127	15	2.1	15	94	5	55	48	0	0	51	1.00
6558433--6558501	31	2.3	30	87	7	97	44	0	2	52	1.16
6558845--6558896	24	2.2	24	89	0	77	44	15	15	25	1.85
6560516--6560708	51	3.8	51	89	0	278	33	13	23	29	1.94
6563651--6563894	52	4.7	52	90	1	366	27	13	22	35	1.93
6563651--6563894	103	2.4	104	89	2	384	27	13	22	35	1.93
6567931--6567963	16	2.1	16	94	0	57	54	3	18	24	1.57
6568376--6568411	18	2.1	16	90	10	54	52	0	16	30	1.44
6568953--6569243	52	5.6	52	93	0	483	24	13	25	36	1.92
6577079--6577159	41	2.0	41	87	0	117	16	17	32	34	1.92
6578838--6578866	14	2.0	15	93	6	51	24	6	27	41	1.80
6581151--6581218	22	2.9	23	70	18	59	48	0	17	33	1.48
6581205--6581240	18	2.1	18	89	5	56	41	0	25	33	1.55
6581684--6581785	37	2.6	38	73	6	98	23	19	26	30	1.98
6585255--6585279	12	2.1	12	100	0	50	24	8	8	60	1.52
6585512--6585559	23	2.1	23	84	7	62	52	0	22	25	1.48
6590194--6590249	17	3.3	17	73	9	60	21	33	0	44	1.52
6596055--6596113	29	2.0	29	86	3	82	33	6	8	50	1.59
6597210--6597247	19	2.1	18	85	9	51	50	5	0	44	1.24
6605116--6605192	31	2.5	31	80	2	82	41	3	11	42	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6617481--6617533	18	2.8	17	81	16	52	41	5	1	50	1.36
6617500--6617541	20	2.1	20	82	8	50	42	7	2	47	1.43
6619456--6619525	19	3.6	19	79	12	63	37	2	1	58	1.22
6619483--6619527	18	2.4	18	88	3	63	37	4	0	57	1.19
6619554--6619602	22	2.2	23	85	3	64	34	6	4	55	1.44
6621885--6621932	26	1.9	24	83	8	60	43	0	25	31	1.55
6624228--6624253	7	3.7	7	100	0	52	30	23	0	46	1.53
6633754--6633830	29	2.6	29	79	6	84	35	2	9	53	1.47
6634135--6634179	10	4.8	9	82	17	56	53	2	0	44	1.13
6635141--6635190	25	2.0	25	100	0	100	48	8	16	28	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132